Wall clock time and date at job start Mon Mar 30 2020 08:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47118 * 2 1 4 4 H 1.09003 * 109.46862 * 179.65027 * 3 2 1 5 5 C 1.50693 * 109.46919 * 299.65189 * 3 2 1 6 6 H 1.08002 * 119.99846 * 114.31342 * 5 3 2 7 7 C 1.37877 * 120.00293 * 294.31619 * 5 3 2 8 8 N 1.31516 * 119.99780 * 347.42885 * 7 5 3 9 9 Si 1.86798 * 120.00144 * 167.15371 * 7 5 3 10 10 H 1.48503 * 109.47044 * 89.99987 * 9 7 5 11 11 H 1.48499 * 109.47307 * 210.00022 * 9 7 5 12 12 H 1.48502 * 109.47348 * 330.00082 * 9 7 5 13 13 N 1.46900 * 109.46953 * 59.65108 * 3 2 1 14 14 C 1.46904 * 110.99957 * 89.00952 * 13 3 2 15 15 H 1.09007 * 109.46904 * 329.11883 * 14 13 3 16 16 C 1.52995 * 109.47188 * 89.12191 * 14 13 3 17 17 C 1.50704 * 109.47071 * 209.12363 * 14 13 3 18 18 C 1.38251 * 119.92774 * 319.72280 * 17 14 13 19 19 C 1.38241 * 120.14128 * 179.69138 * 18 17 14 20 20 C 1.38542 * 120.02712 * 0.59636 * 19 18 17 21 21 C 1.39264 * 119.83170 * 359.68223 * 20 19 18 22 22 C 1.38238 * 119.92728 * 139.99801 * 17 14 13 23 23 O 1.36495 * 108.63897 * 180.02562 * 21 20 19 24 24 C 1.43988 * 105.48608 * 342.71753 * 23 21 20 25 25 O 1.36498 * 131.52711 * 179.68898 * 20 19 18 26 26 H 1.09001 * 109.46958 * 65.04291 * 1 2 3 27 27 H 1.08999 * 109.46916 * 185.03940 * 1 2 3 28 28 H 1.08996 * 109.47333 * 305.04330 * 1 2 3 29 29 H 1.08994 * 109.47559 * 240.00126 * 2 1 3 30 30 H 1.09001 * 109.46949 * 119.99400 * 2 1 3 31 31 H 0.96997 * 119.99957 * 1.45750 * 8 7 5 32 32 H 1.00895 * 111.00350 * 212.95983 * 13 3 2 33 33 H 1.09005 * 109.47030 * 179.97438 * 16 14 13 34 34 H 1.09002 * 109.46883 * 299.99950 * 16 14 13 35 35 H 1.08993 * 109.47547 * 60.00161 * 16 14 13 36 36 H 1.08005 * 119.92587 * 359.97438 * 18 17 14 37 37 H 1.07997 * 119.97939 * 180.27603 * 19 18 17 38 38 H 1.07996 * 119.98611 * 0.02562 * 22 17 14 39 39 H 1.09000 * 110.57440 * 268.55784 * 24 23 21 40 40 H 1.09002 * 110.56712 * 145.68376 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4425 0.0063 5 6 1.5447 2.1504 -1.2347 6 1 0.8498 2.9721 -1.1439 7 6 1.9787 1.7490 -2.4803 8 7 2.9994 0.9266 -2.5876 9 14 1.1121 2.3673 -4.0153 10 1 1.7527 3.6269 -4.4720 11 1 1.2129 1.3440 -5.0868 12 1 -0.3180 2.6226 -3.7076 13 7 1.5434 2.1375 1.1952 14 6 2.4699 1.9723 2.3232 15 1 2.9751 1.0099 2.2405 16 6 3.5074 3.0965 2.2999 17 6 1.7001 2.0260 3.6176 18 6 0.6729 2.9384 3.7719 19 6 -0.0404 2.9871 4.9551 20 6 0.2811 2.1291 5.9943 21 6 1.3195 1.2139 5.8410 22 6 2.0262 1.1666 4.6502 23 8 1.4374 0.4908 6.9927 24 6 0.7331 1.2472 7.9952 25 8 -0.2514 1.9797 7.2422 26 1 -0.3633 0.4336 -0.9317 27 1 -0.3633 -1.0237 0.0903 28 1 -0.3634 0.5900 0.8413 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.4334 0.5858 -1.7899 32 1 1.3781 3.1141 1.0032 33 1 4.1946 2.9742 3.1371 34 1 4.0642 3.0577 1.3636 35 1 3.0024 4.0588 2.3825 36 1 0.4243 3.6114 2.9647 37 1 -0.8452 3.6978 5.0712 38 1 2.8322 0.4582 4.5286 39 1 1.4112 1.9311 8.5058 40 1 0.2507 0.5801 8.7097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:08 Heat of formation + Delta-G solvation = -62.407082 kcal Electronic energy + Delta-G solvation = -21711.049535 eV Core-core repulsion = 18490.725020 eV Total energy + Delta-G solvation = -3220.324516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.10181 -39.87712 -37.99549 -37.26126 -35.33856 -33.17822 -31.69643 -30.84347 -29.49521 -27.26675 -26.66534 -25.37501 -24.61572 -23.86424 -22.21275 -21.02382 -19.07916 -18.84986 -18.36278 -18.20555 -17.15203 -16.23123 -16.06379 -15.57559 -15.51394 -15.42987 -14.96974 -14.83464 -14.58699 -14.19939 -14.04820 -13.97091 -13.82966 -13.68374 -13.32614 -13.02542 -12.62625 -12.46195 -12.42846 -12.03762 -11.95565 -11.91870 -11.69202 -11.59632 -11.50805 -10.63927 -10.24913 -9.82440 -9.07667 -8.96152 -8.53358 -6.21262 0.16825 0.25615 1.56892 1.65000 1.80654 1.81835 2.52301 2.58948 2.62062 3.26802 3.49502 3.54592 3.83570 3.88203 4.04569 4.10398 4.22247 4.31174 4.38371 4.40503 4.48045 4.57709 4.59816 4.73232 4.81741 4.88811 5.05853 5.08480 5.10209 5.17340 5.25895 5.34055 5.43001 5.46824 5.58487 5.63376 5.73045 5.96965 6.14776 6.17219 6.57025 6.66656 6.90752 7.56648 8.84662 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.003932 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.128649 B = 7118.985031 C = 7139.285075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C 0.212 3.788 4 H -0.032 1.032 5 C -0.598 4.598 6 H 0.053 0.947 7 C -0.022 4.022 8 N -0.935 5.935 9 Si 1.107 2.893 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.664 5.664 14 C 0.125 3.875 15 H 0.064 0.936 16 C -0.163 4.163 17 C -0.048 4.048 18 C -0.086 4.086 19 C -0.098 4.098 20 C 0.010 3.990 21 C 0.017 3.983 22 C -0.108 4.108 23 O -0.328 6.328 24 C 0.205 3.795 25 O -0.324 6.324 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.029 0.971 31 H 0.258 0.742 32 H 0.339 0.661 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 3.933 18.589 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C 0.104 3.896 4 H -0.014 1.014 5 C -0.636 4.636 6 H 0.071 0.929 7 C -0.221 4.221 8 N -0.572 5.572 9 Si 0.930 3.070 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.196 1.196 13 N -0.295 5.295 14 C 0.014 3.986 15 H 0.083 0.917 16 C -0.222 4.222 17 C -0.049 4.049 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.034 4.034 21 C -0.027 4.027 22 C -0.127 4.127 23 O -0.245 6.245 24 C 0.094 3.906 25 O -0.241 6.241 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.121 0.879 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.217 3.204 17.292 18.085 hybrid contribution 1.102 0.195 1.429 1.815 sum -3.114 3.399 18.721 19.280 Atomic orbital electron populations 1.21306 0.95139 0.98876 1.01340 1.21385 0.97386 0.97833 0.97232 1.19010 0.90883 0.91771 0.87986 1.01421 1.22233 1.29751 1.18868 0.92755 0.92907 1.26892 0.95192 0.95578 1.04470 1.70889 1.19991 1.33640 1.32701 0.83057 0.75602 0.75830 0.72479 1.20369 1.21607 1.19610 1.60566 1.45750 1.17760 1.05391 1.20363 0.91000 0.98655 0.88552 0.91746 1.22344 0.99320 0.98959 1.01568 1.19556 0.96690 0.95121 0.93572 1.20866 0.94455 0.98892 0.96250 1.20299 1.02172 0.98548 0.90647 1.19964 0.95424 0.99552 0.88509 1.19792 0.98608 0.94020 0.90325 1.19972 1.00853 1.01633 0.90258 1.87310 1.74040 1.45275 1.17832 1.26094 0.85249 0.90539 0.88707 1.87298 1.42286 1.73934 1.20547 0.94450 0.94560 0.92109 0.95514 0.95221 0.93200 0.84273 0.91010 0.94117 0.91175 0.83582 0.82814 0.84775 0.87893 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.49 71.98 0.68 -3.96 16 2 C -0.10 -4.62 5.56 30.60 0.17 -4.45 16 3 C 0.21 10.03 1.72 44.17 0.08 10.11 16 4 H -0.03 -1.67 6.63 -2.39 -0.02 -1.68 16 5 C -0.60 -31.13 7.31 25.60 0.19 -30.94 16 6 H 0.05 2.72 7.65 -2.91 -0.02 2.69 16 7 C -0.02 -1.19 5.15 84.65 0.44 -0.76 16 8 N -0.93 -55.10 13.05 21.45 0.28 -54.82 16 9 Si 1.11 48.94 29.92 68.60 2.05 50.99 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 N -0.66 -25.32 4.60 -477.13 -2.19 -27.52 16 14 C 0.12 4.07 2.59 44.17 0.11 4.18 16 15 H 0.06 2.29 7.27 -2.38 -0.02 2.28 16 16 C -0.16 -4.77 9.13 71.98 0.66 -4.11 16 17 C -0.05 -1.40 4.96 -19.86 -0.10 -1.50 16 18 C -0.09 -2.27 9.31 22.27 0.21 -2.06 16 19 C -0.10 -2.40 10.06 22.34 0.22 -2.18 16 20 C 0.01 0.26 7.15 22.59 0.16 0.42 16 21 C 0.02 0.47 7.15 22.59 0.16 0.63 16 22 C -0.11 -3.08 9.68 22.34 0.22 -2.86 16 23 O -0.33 -8.32 11.40 -76.00 -0.87 -9.19 16 24 C 0.20 3.54 8.89 113.37 1.01 4.55 16 25 O -0.32 -7.75 11.40 -76.03 -0.87 -8.62 16 26 H 0.04 1.69 7.41 -2.39 -0.02 1.67 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 2.48 7.44 -2.39 -0.02 2.46 16 29 H 0.03 1.37 6.68 -2.39 -0.02 1.36 16 30 H 0.03 1.28 7.80 -2.39 -0.02 1.26 16 31 H 0.26 15.42 6.28 -92.71 -0.58 14.84 16 32 H 0.34 12.60 7.38 -89.70 -0.66 11.94 16 33 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 35 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 36 H 0.15 3.57 7.38 -2.91 -0.02 3.55 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 38 H 0.13 3.58 8.03 -2.91 -0.02 3.56 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -62.95 326.37 3.18 -59.77 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.57 Total: 22.32 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 4.21 Total: -32.95 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.91 Total: -82.33 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.73 Total: -17.81 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 50.99 kcal Total: -62.95 3.18 -59.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.634 kcal (2) G-P(sol) polarization free energy of solvation -62.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds