Wall clock time and date at job start Mon Mar 30 2020 07:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47453 * 2 1 4 4 C 1.53000 * 109.47134 * 59.99866 * 3 2 1 5 5 C 1.53004 * 109.47008 * 300.00438 * 3 2 1 6 6 C 1.50698 * 109.47461 * 180.02562 * 3 2 1 7 7 O 1.21290 * 119.99608 * 359.97438 * 6 3 2 8 8 N 1.34775 * 120.00104 * 179.97438 * 6 3 2 9 9 C 1.39991 * 119.99797 * 175.63581 * 8 6 3 10 10 C 1.38722 * 120.10127 * 34.57115 * 9 8 6 11 11 C 1.38191 * 119.99898 * 179.97438 * 10 9 8 12 12 C 1.38353 * 120.19875 * 0.02562 * 11 10 9 13 13 C 1.38153 * 120.20690 * 0.02562 * 12 11 10 14 14 C 1.38747 * 119.99894 * 359.97438 * 13 12 11 15 15 O 1.35779 * 120.10081 * 179.97438 * 14 13 12 16 16 C 1.34808 * 117.00143 * 354.55152 * 15 14 13 17 17 H 1.07998 * 119.99522 * 5.04975 * 16 15 14 18 18 C 1.38635 * 120.00068 * 185.05068 * 16 15 14 19 19 N 1.31569 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99907 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46923 * 59.99656 * 20 18 16 22 22 H 1.48499 * 109.46940 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46781 * 299.99706 * 20 18 16 24 24 H 1.09004 * 109.46914 * 299.99827 * 1 2 3 25 25 H 1.09005 * 109.47296 * 59.99484 * 1 2 3 26 26 H 1.08993 * 109.47276 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46914 * 240.00173 * 2 1 3 28 28 H 1.09001 * 109.47346 * 120.00008 * 2 1 3 29 29 H 1.08993 * 109.47140 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47302 * 300.00701 * 4 3 2 31 31 H 1.09005 * 109.46498 * 60.00168 * 4 3 2 32 32 H 1.09004 * 109.47067 * 299.99648 * 5 3 2 33 33 H 1.09001 * 109.47463 * 59.99344 * 5 3 2 34 34 H 1.08993 * 109.47179 * 179.97438 * 5 3 2 35 35 H 0.96998 * 119.99800 * 355.63798 * 8 6 3 36 36 H 1.08001 * 120.00661 * 0.25255 * 10 9 8 37 37 H 1.08002 * 119.90204 * 179.97438 * 11 10 9 38 38 H 1.08004 * 119.89467 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.00156 * 180.02562 * 13 12 11 40 40 H 0.97009 * 119.99715 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3921 -0.0006 8 7 4.2209 2.6097 -0.0013 9 6 5.6178 2.6114 0.0904 10 6 6.3554 1.5986 -0.5052 11 6 7.7343 1.6027 -0.4138 12 6 8.3834 2.6145 0.2711 13 6 7.6570 3.6267 0.8683 14 6 6.2723 3.6309 0.7818 15 8 5.5563 4.6243 1.3684 16 6 6.2414 5.5139 2.1144 17 1 7.3194 5.4657 2.1577 18 6 5.5620 6.4907 2.8261 19 7 4.2487 6.5497 2.7729 20 14 6.5113 7.7238 3.8593 21 1 7.4356 8.4925 2.9875 22 1 5.5599 8.6564 4.5154 23 1 7.2931 7.0031 4.8959 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8931 3.1915 1.2490 30 1 0.4400 2.1638 1.2493 31 1 1.8934 1.6499 2.1392 32 1 1.8933 1.6500 -2.1393 33 1 0.4400 2.1638 -1.2493 34 1 1.8930 3.1915 -1.2490 35 1 3.7380 3.4485 -0.0652 36 1 5.8523 0.8094 -1.0441 37 1 8.3069 0.8132 -0.8777 38 1 9.4612 2.6126 0.3398 39 1 8.1672 4.4151 1.4017 40 1 3.7734 7.2334 3.2706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054403093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:13 Heat of formation + Delta-G solvation = -51.821447 kcal Electronic energy + Delta-G solvation = -21914.311697 eV Core-core repulsion = 18694.446209 eV Total energy + Delta-G solvation = -3219.865488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32987 -38.80423 -36.63387 -35.87090 -34.14329 -32.29953 -30.41354 -29.15291 -28.23452 -27.27291 -25.39814 -24.77934 -22.74018 -21.53173 -20.61887 -18.65237 -17.99442 -17.59437 -16.45585 -15.99579 -15.07348 -14.85330 -14.56450 -14.48738 -14.02265 -13.84660 -13.74098 -13.60122 -13.13469 -12.72835 -12.44695 -12.38054 -12.09691 -11.79136 -11.73320 -11.49776 -11.35666 -11.15220 -11.08044 -10.93691 -10.78189 -10.55424 -10.54325 -10.50692 -9.68469 -9.58339 -9.04145 -8.85963 -7.74487 -7.01416 -6.50212 -4.07429 2.06477 2.35822 3.09358 3.10584 3.12071 3.14056 3.63178 3.92635 4.58230 4.74402 4.85247 4.94628 5.01938 5.19990 5.29237 5.35321 5.48838 5.60380 5.72695 5.73895 5.80845 5.87977 5.93057 5.94978 6.05175 6.08048 6.12376 6.21443 6.27438 6.41050 6.46987 6.50932 6.76157 6.92244 7.08162 7.20741 7.33873 7.39129 7.81581 7.93563 8.04726 8.66540 8.96478 9.62406 10.67698 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.005845 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.046642 B = 4789.654485 C = 6275.250698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.079 4.079 4 C -0.144 4.144 5 C -0.144 4.144 6 C 0.519 3.481 7 O -0.539 6.539 8 N -0.647 5.647 9 C 0.065 3.935 10 C -0.076 4.076 11 C -0.197 4.197 12 C -0.085 4.085 13 C -0.223 4.223 14 C 0.135 3.865 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.041 3.959 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.412 0.588 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 -6.568 -5.329 9.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.136 4.136 3 C -0.082 4.082 4 C -0.202 4.202 5 C -0.201 4.201 6 C 0.306 3.694 7 O -0.416 6.416 8 N -0.291 5.291 9 C -0.029 4.029 10 C -0.097 4.097 11 C -0.217 4.217 12 C -0.104 4.104 13 C -0.243 4.243 14 C 0.081 3.919 15 O -0.083 6.083 16 C -0.466 4.466 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.248 0.752 36 H 0.148 0.852 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.148 0.852 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.708 -7.095 -5.210 9.983 hybrid contribution 0.432 1.120 0.630 1.355 sum -4.276 -5.976 -4.581 8.659 Atomic orbital electron populations 1.21918 0.95720 1.01504 1.02072 1.21330 0.95175 0.93868 1.03205 1.20781 0.91233 0.98207 0.98000 1.21931 1.01447 1.01039 0.95760 1.21933 1.01890 1.00319 0.95960 1.20591 0.89690 0.83451 0.75684 1.90626 1.69970 1.31412 1.49611 1.43168 1.05237 1.09473 1.71218 1.16926 0.82068 0.98236 1.05683 1.20818 0.93445 0.97426 0.97972 1.20546 0.93808 1.00861 1.06466 1.20782 0.98603 0.94080 0.96895 1.20991 0.93049 1.02343 1.07899 1.19163 0.90731 0.89264 0.92754 1.83892 1.34885 1.32848 1.56707 1.21240 0.91837 1.08252 1.25249 0.89151 1.25228 0.95916 0.97925 0.97249 1.70005 1.06332 1.33578 1.40049 0.85794 0.78752 0.79450 0.79541 1.19528 1.20310 1.19543 0.92300 0.92447 0.92815 0.91449 0.91323 0.91157 0.91359 0.92131 0.92217 0.91131 0.91894 0.75167 0.85215 0.87298 0.87365 0.85204 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.21 37.16 0.34 -1.19 16 2 C -0.10 -1.25 4.28 -26.73 -0.11 -1.36 16 3 C -0.08 -1.10 0.65 -155.66 -0.10 -1.20 16 4 C -0.14 -2.00 8.02 37.16 0.30 -1.71 16 5 C -0.14 -1.68 8.01 37.16 0.30 -1.38 16 6 C 0.52 9.42 6.33 -10.99 -0.07 9.35 16 7 O -0.54 -11.14 13.40 5.55 0.07 -11.06 16 8 N -0.65 -12.66 4.97 -9.74 -0.05 -12.71 16 9 C 0.06 1.42 6.33 -83.49 -0.53 0.89 16 10 C -0.08 -1.56 8.69 -39.42 -0.34 -1.90 16 11 C -0.20 -3.70 10.04 -39.56 -0.40 -4.09 16 12 C -0.08 -1.61 10.04 -39.57 -0.40 -2.00 16 13 C -0.22 -4.86 9.16 -39.42 -0.36 -5.22 16 14 C 0.14 3.24 6.67 -38.93 -0.26 2.98 16 15 O -0.18 -4.83 9.32 0.02 0.00 -4.83 16 16 C -0.39 -10.50 9.49 30.88 0.29 -10.21 16 17 H 0.09 2.28 5.21 -52.49 -0.27 2.00 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.07 13.67 55.48 0.76 -23.31 16 20 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 25 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 28 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 29 H 0.07 1.08 7.67 -51.93 -0.40 0.69 16 30 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 34 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 35 H 0.41 7.77 7.42 -40.82 -0.30 7.47 16 36 H 0.13 2.60 6.20 -52.49 -0.33 2.27 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 39 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 325.01 15.07 4.90 4.90 Total: -1.00 -30.22 325.01 -6.19 -36.41 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.41 Total: 11.66 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.44 Total: -16.06 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.71 Total: -36.01 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.07 Total: -15.89 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.22 -6.19 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054403093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.411 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds