Wall clock time and date at job start Mon Mar 30 2020 07:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47453 * 2 1 4 4 C 1.53000 * 109.47134 * 59.99866 * 3 2 1 5 5 C 1.53004 * 109.47008 * 300.00438 * 3 2 1 6 6 C 1.50698 * 109.47461 * 180.02562 * 3 2 1 7 7 O 1.21290 * 119.99608 * 359.97438 * 6 3 2 8 8 N 1.34775 * 120.00104 * 179.97438 * 6 3 2 9 9 C 1.39991 * 119.99797 * 175.63581 * 8 6 3 10 10 C 1.38722 * 120.10127 * 34.57115 * 9 8 6 11 11 C 1.38191 * 119.99898 * 179.97438 * 10 9 8 12 12 C 1.38353 * 120.19875 * 0.02562 * 11 10 9 13 13 C 1.38153 * 120.20690 * 0.02562 * 12 11 10 14 14 C 1.38747 * 119.99894 * 359.97438 * 13 12 11 15 15 O 1.35779 * 120.10081 * 179.97438 * 14 13 12 16 16 C 1.34808 * 117.00143 * 354.55152 * 15 14 13 17 17 H 1.07998 * 119.99522 * 5.04975 * 16 15 14 18 18 C 1.38635 * 120.00068 * 185.05068 * 16 15 14 19 19 N 1.31569 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99907 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46923 * 59.99656 * 20 18 16 22 22 H 1.48499 * 109.46940 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46781 * 299.99706 * 20 18 16 24 24 H 1.09004 * 109.46914 * 299.99827 * 1 2 3 25 25 H 1.09005 * 109.47296 * 59.99484 * 1 2 3 26 26 H 1.08993 * 109.47276 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46914 * 240.00173 * 2 1 3 28 28 H 1.09001 * 109.47346 * 120.00008 * 2 1 3 29 29 H 1.08993 * 109.47140 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47302 * 300.00701 * 4 3 2 31 31 H 1.09005 * 109.46498 * 60.00168 * 4 3 2 32 32 H 1.09004 * 109.47067 * 299.99648 * 5 3 2 33 33 H 1.09001 * 109.47463 * 59.99344 * 5 3 2 34 34 H 1.08993 * 109.47179 * 179.97438 * 5 3 2 35 35 H 0.96998 * 119.99800 * 355.63798 * 8 6 3 36 36 H 1.08001 * 120.00661 * 0.25255 * 10 9 8 37 37 H 1.08002 * 119.90204 * 179.97438 * 11 10 9 38 38 H 1.08004 * 119.89467 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.00156 * 180.02562 * 13 12 11 40 40 H 0.97009 * 119.99715 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3921 -0.0006 8 7 4.2209 2.6097 -0.0013 9 6 5.6178 2.6114 0.0904 10 6 6.3554 1.5986 -0.5052 11 6 7.7343 1.6027 -0.4138 12 6 8.3834 2.6145 0.2711 13 6 7.6570 3.6267 0.8683 14 6 6.2723 3.6309 0.7818 15 8 5.5563 4.6243 1.3684 16 6 6.2414 5.5139 2.1144 17 1 7.3194 5.4657 2.1577 18 6 5.5620 6.4907 2.8261 19 7 4.2487 6.5497 2.7729 20 14 6.5113 7.7238 3.8593 21 1 7.4356 8.4925 2.9875 22 1 5.5599 8.6564 4.5154 23 1 7.2931 7.0031 4.8959 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8931 3.1915 1.2490 30 1 0.4400 2.1638 1.2493 31 1 1.8934 1.6499 2.1392 32 1 1.8933 1.6500 -2.1393 33 1 0.4400 2.1638 -1.2493 34 1 1.8930 3.1915 -1.2490 35 1 3.7380 3.4485 -0.0652 36 1 5.8523 0.8094 -1.0441 37 1 8.3069 0.8132 -0.8777 38 1 9.4612 2.6126 0.3398 39 1 8.1672 4.4151 1.4017 40 1 3.7734 7.2334 3.2706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054403093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:12 Heat of formation + Delta-G solvation = -69.790714 kcal Electronic energy + Delta-G solvation = -21915.090903 eV Core-core repulsion = 18694.446209 eV Total energy + Delta-G solvation = -3220.644694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.83693 -40.44701 -38.24011 -37.24536 -35.71088 -34.24543 -31.55271 -30.75818 -29.78817 -28.33375 -27.33043 -25.89341 -24.21114 -23.18571 -22.08558 -20.06367 -19.80709 -19.20276 -17.89001 -17.63331 -16.55230 -16.40965 -16.10757 -15.84127 -15.53703 -15.40955 -15.16491 -14.97353 -14.76366 -14.29622 -13.73323 -13.57338 -13.51203 -13.13554 -12.99967 -12.85202 -12.74154 -12.58544 -12.43228 -12.36947 -12.18810 -12.16211 -11.57984 -11.54368 -11.46906 -11.20225 -10.78284 -10.54919 -9.41266 -8.73323 -8.45509 -6.10797 0.43608 0.67184 1.37042 1.46431 1.51324 1.61305 2.14533 2.21441 2.84943 3.13382 3.41314 3.54413 3.71940 3.86318 4.12274 4.20064 4.26201 4.43522 4.50015 4.54772 4.61446 4.67966 4.71375 4.81446 4.86024 4.89323 5.03644 5.08546 5.09328 5.11318 5.14274 5.23015 5.39175 5.45572 5.49317 5.54979 5.69434 5.74077 6.00275 6.19490 6.50472 6.99471 7.14468 7.74614 8.75978 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.005845 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.046642 B = 4789.654485 C = 6275.250698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.072 4.072 4 C -0.140 4.140 5 C -0.140 4.140 6 C 0.513 3.487 7 O -0.566 6.566 8 N -0.651 5.651 9 C 0.054 3.946 10 C -0.087 4.087 11 C -0.179 4.179 12 C -0.081 4.081 13 C -0.231 4.231 14 C 0.098 3.902 15 O -0.217 6.217 16 C -0.413 4.413 17 H 0.099 0.901 18 C -0.015 4.015 19 N -0.911 5.911 20 Si 1.012 2.988 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.263 1.263 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.412 0.588 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -7.297 -5.940 10.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.076 4.076 4 C -0.197 4.197 5 C -0.198 4.198 6 C 0.303 3.697 7 O -0.445 6.445 8 N -0.294 5.294 9 C -0.040 4.040 10 C -0.107 4.107 11 C -0.198 4.198 12 C -0.099 4.099 13 C -0.251 4.251 14 C 0.046 3.954 15 O -0.123 6.123 16 C -0.489 4.489 17 H 0.117 0.883 18 C -0.213 4.213 19 N -0.549 5.549 20 Si 0.832 3.168 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.187 1.187 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.248 0.752 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.211 -7.857 -5.851 10.663 hybrid contribution 0.375 1.122 0.689 1.369 sum -3.836 -6.735 -5.161 9.312 Atomic orbital electron populations 1.21893 0.92951 1.02727 1.03044 1.21318 0.97468 0.92376 1.02097 1.20846 0.87901 0.99645 0.99161 1.21912 1.03402 0.99364 0.95049 1.21950 1.03641 0.99528 0.94641 1.21464 0.91531 0.82449 0.74301 1.90590 1.71030 1.32110 1.50798 1.43303 1.04698 1.10088 1.71328 1.17279 0.83380 0.98101 1.05259 1.21038 0.94489 0.97048 0.98167 1.21055 0.93247 1.01039 1.04421 1.21182 1.00558 0.92702 0.95483 1.21213 0.92497 1.03254 1.08094 1.19631 0.91975 0.89843 0.93924 1.83866 1.35913 1.34189 1.58363 1.21711 0.92539 1.08850 1.25850 0.88344 1.26397 0.96951 0.99702 0.98267 1.70138 1.08099 1.34913 1.41721 0.84729 0.77476 0.76773 0.77797 1.18262 1.19699 1.18712 0.91803 0.90893 0.91593 0.91904 0.93167 0.93286 0.88110 0.93771 0.91827 0.88246 0.92553 0.75195 0.84919 0.83409 0.83272 0.85411 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.21 71.98 0.66 -1.89 16 2 C -0.09 -2.32 4.28 30.59 0.13 -2.19 16 3 C -0.07 -2.00 0.65 -52.93 -0.03 -2.04 16 4 C -0.14 -3.91 8.02 71.98 0.58 -3.33 16 5 C -0.14 -3.11 8.01 71.98 0.58 -2.53 16 6 C 0.51 19.08 6.33 87.66 0.55 19.63 16 7 O -0.57 -23.77 13.40 -3.06 -0.04 -23.81 16 8 N -0.65 -26.50 4.97 -303.10 -1.51 -28.00 16 9 C 0.05 2.43 6.33 38.25 0.24 2.67 16 10 C -0.09 -3.50 8.69 22.37 0.19 -3.30 16 11 C -0.18 -6.20 10.04 22.29 0.22 -5.98 16 12 C -0.08 -2.86 10.04 22.28 0.22 -2.63 16 13 C -0.23 -10.04 9.16 22.37 0.21 -9.84 16 14 C 0.10 4.85 6.67 22.69 0.15 5.00 16 15 O -0.22 -12.30 9.32 -22.85 -0.21 -12.51 16 16 C -0.41 -23.10 9.49 67.91 0.64 -22.46 16 17 H 0.10 5.09 5.21 -2.91 -0.02 5.08 16 18 C -0.01 -0.80 5.49 84.83 0.47 -0.33 16 19 N -0.91 -52.73 13.67 21.61 0.30 -52.44 16 20 Si 1.01 41.51 29.55 68.60 2.03 43.53 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 H 0.06 1.04 6.43 -2.39 -0.02 1.03 16 25 H 0.07 1.04 6.43 -2.38 -0.02 1.03 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 28 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 29 H 0.05 1.57 7.67 -2.39 -0.02 1.56 16 30 H 0.10 2.13 6.43 -2.39 -0.02 2.11 16 31 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.64 6.43 -2.39 -0.02 1.63 16 34 H 0.06 1.33 7.47 -2.39 -0.02 1.31 16 35 H 0.41 16.54 7.42 -92.71 -0.69 15.85 16 36 H 0.13 5.24 6.20 -2.91 -0.02 5.22 16 37 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.13 5.51 5.64 -2.91 -0.02 5.49 16 40 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -68.41 325.01 5.75 -62.66 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: 0.37 Total: 39.78 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 4.82 Total: -29.22 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -1.21 Total: -80.44 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.25 Total: -36.32 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -68.41 5.75 -62.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054403093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.129 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds