Wall clock time and date at job start Mon Mar 30 2020 07:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35652 * 116.99811 * 2 1 4 4 C 1.38706 * 120.15473 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08366 * 180.25684 * 4 3 2 6 6 C 1.38547 * 120.39089 * 359.43991 * 5 4 3 7 7 C 1.50702 * 119.84777 * 180.28289 * 6 5 4 8 8 C 1.37792 * 120.29891 * 0.56262 * 6 5 4 9 9 C 1.39701 * 119.90795 * 359.72047 * 8 6 5 10 10 C 1.47531 * 120.19009 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00151 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00255 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47302 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46935 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47003 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99540 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99981 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99784 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47249 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46896 * 119.99828 * 20 18 16 23 23 H 1.48491 * 109.46932 * 239.99947 * 20 18 16 24 24 H 1.09003 * 109.47422 * 300.00335 * 1 2 3 25 25 H 1.09007 * 109.47148 * 60.00057 * 1 2 3 26 26 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.95345 * 359.97274 * 4 3 2 28 28 H 1.08001 * 119.80285 * 179.70084 * 5 4 3 29 29 H 1.08997 * 109.46980 * 270.27054 * 7 6 5 30 30 H 1.08999 * 109.47320 * 30.27924 * 7 6 5 31 31 H 1.09003 * 109.46944 * 150.27700 * 7 6 5 32 32 H 1.07997 * 120.04449 * 179.74991 * 8 6 5 33 33 H 0.97003 * 120.00006 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47277 * 300.00614 * 13 12 10 35 35 H 1.08999 * 109.46842 * 60.00317 * 13 12 10 36 36 H 1.08995 * 109.46951 * 300.00602 * 14 13 12 37 37 H 1.08999 * 109.46916 * 60.00358 * 14 13 12 38 38 H 1.08998 * 109.47360 * 300.00437 * 15 14 13 39 39 H 1.08999 * 109.47126 * 60.00364 * 15 14 13 40 40 H 0.97001 * 119.99856 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9207 3.6033 -0.0048 6 6 3.3038 3.6836 0.0009 7 6 3.9768 5.0320 0.0014 8 6 4.0668 2.5362 0.0004 9 6 3.4441 1.2857 -0.0001 10 6 4.2550 0.0532 -0.0013 11 8 3.7094 -1.0336 -0.0022 12 7 5.6004 0.1316 -0.0014 13 6 6.4057 -1.0923 -0.0020 14 6 7.8911 -0.7255 -0.0013 15 6 8.7319 -2.0037 -0.0026 16 6 10.1951 -1.6425 -0.0025 17 1 10.4950 -0.6050 -0.0013 18 6 11.1505 -2.6365 -0.0041 19 7 10.7851 -3.8998 -0.0061 20 14 12.9641 -2.1887 -0.0034 21 1 13.1091 -0.7107 -0.0016 22 1 13.6124 -2.7515 1.2083 23 1 13.6124 -2.7477 -1.2167 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2138 2.3195 0.0005 28 1 1.3304 4.5077 -0.0093 29 1 4.1391 5.3574 -1.0261 30 1 3.3428 5.7544 0.5156 31 1 4.9354 4.9594 0.5152 32 1 5.1447 2.6036 0.0008 33 1 6.0357 0.9985 -0.0003 34 1 6.1761 -1.6786 0.8877 35 1 6.1760 -1.6778 -0.8922 36 1 8.1208 -0.1389 -0.8907 37 1 8.1204 -0.1402 0.8892 38 1 8.5022 -2.5907 0.8867 39 1 8.5026 -2.5886 -0.8933 40 1 11.4573 -4.5991 -0.0069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:39 Heat of formation + Delta-G solvation = -67.625316 kcal Electronic energy + Delta-G solvation = -20554.879343 eV Core-core repulsion = 17334.328548 eV Total energy + Delta-G solvation = -3220.550795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68578 -38.83523 -37.80746 -35.29103 -33.31344 -32.36243 -31.80512 -30.72699 -28.06223 -26.75157 -26.16253 -24.21169 -22.86551 -21.46651 -20.65220 -19.84248 -18.43541 -16.90223 -16.68450 -16.22869 -15.97366 -15.14686 -15.10324 -14.84808 -14.57495 -14.40999 -14.02573 -13.95985 -13.60173 -13.32932 -12.50700 -12.39408 -12.26250 -12.25299 -11.86371 -11.73384 -11.63101 -11.36289 -11.07826 -10.90059 -10.68553 -10.54812 -9.82997 -9.77106 -9.31905 -9.29803 -9.07282 -8.67433 -8.35353 -8.26039 -5.99699 -4.02624 0.70800 1.13318 2.93355 3.09674 3.31435 3.38621 3.41647 3.46119 3.76554 4.44520 4.46430 4.49057 4.64285 4.78262 4.93699 4.98386 5.05102 5.21683 5.29793 5.31682 5.36144 5.37131 5.59091 5.65444 5.80110 5.84191 5.88935 5.99779 6.22104 6.26167 6.45383 6.56854 6.65173 6.89649 7.04958 7.19831 7.66806 7.79662 7.81975 7.99555 8.40335 8.53396 9.04359 9.61469 11.11679 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.003091 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.277877 B = 9056.836142 C =10132.760703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.279 6.279 3 C 0.178 3.822 4 C -0.218 4.218 5 C -0.057 4.057 6 C -0.135 4.135 7 C -0.109 4.109 8 C -0.048 4.048 9 C -0.163 4.163 10 C 0.552 3.448 11 O -0.523 6.523 12 N -0.725 5.725 13 C 0.118 3.882 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.395 0.605 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.610 17.513 0.000 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.190 6.190 3 C 0.129 3.871 4 C -0.237 4.237 5 C -0.075 4.075 6 C -0.135 4.135 7 C -0.166 4.166 8 C -0.067 4.067 9 C -0.167 4.167 10 C 0.339 3.661 11 O -0.400 6.400 12 N -0.377 5.377 13 C -0.004 4.004 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.151 0.849 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.840 16.304 -0.001 26.460 hybrid contribution 0.961 0.709 -0.005 1.195 sum -19.878 17.014 -0.006 26.165 Atomic orbital electron populations 1.23154 0.78946 1.04316 1.00976 1.86409 1.20553 1.25359 1.86633 1.19062 0.91028 0.84887 0.92088 1.21210 1.00220 0.91996 1.10247 1.20967 0.93956 0.97053 0.95554 1.19735 0.93575 0.95578 1.04656 1.20730 1.00546 0.92934 1.02390 1.21105 0.99887 0.90319 0.95385 1.19479 0.90932 0.94273 1.11985 1.17982 0.82262 0.88473 0.77416 1.90817 1.71676 1.28627 1.48878 1.46114 1.05709 1.10656 1.75211 1.21636 0.91259 0.85488 1.02050 1.21890 0.91310 1.01846 1.00834 1.19036 0.93632 0.91083 0.97692 1.21248 0.91216 0.92752 1.50721 0.92595 1.25034 0.99136 0.95020 0.95327 1.69978 1.33538 0.99063 1.50702 0.86530 0.85319 0.78522 0.77580 1.19757 1.21015 1.21022 0.92712 0.92722 0.87970 0.84879 0.85465 0.91239 0.91634 0.91318 0.84822 0.77055 0.91729 0.91721 0.92741 0.92739 0.96243 0.96241 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.28 -3.94 8.57 -40.53 -0.35 -4.29 16 3 C 0.18 2.33 6.70 -38.69 -0.26 2.07 16 4 C -0.22 -2.10 9.03 -39.48 -0.36 -2.46 16 5 C -0.06 -0.48 9.68 -39.53 -0.38 -0.86 16 6 C -0.14 -1.22 5.87 -104.67 -0.61 -1.84 16 7 C -0.11 -0.70 10.00 36.01 0.36 -0.34 16 8 C -0.05 -0.52 9.18 -39.20 -0.36 -0.88 16 9 C -0.16 -2.27 5.89 -104.85 -0.62 -2.88 16 10 C 0.55 9.46 7.76 -12.47 -0.10 9.36 16 11 O -0.52 -10.97 15.16 -16.60 -0.25 -11.22 16 12 N -0.72 -11.42 5.51 -61.35 -0.34 -11.76 16 13 C 0.12 2.20 5.67 -4.04 -0.02 2.17 16 14 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 28 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.13 1.18 6.40 -52.49 -0.34 0.84 16 33 H 0.39 5.00 6.50 -40.82 -0.27 4.73 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -34.77 337.73 -8.09 -42.86 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.91 Total: -0.88 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.05 Total: -10.07 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.40 Total: -38.09 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.60 Total: -15.51 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.77 -8.09 -42.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.766 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds