Wall clock time and date at job start Mon Mar 30 2020 07:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35652 * 116.99811 * 2 1 4 4 C 1.38706 * 120.15473 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08366 * 180.25684 * 4 3 2 6 6 C 1.38547 * 120.39089 * 359.43991 * 5 4 3 7 7 C 1.50702 * 119.84777 * 180.28289 * 6 5 4 8 8 C 1.37792 * 120.29891 * 0.56262 * 6 5 4 9 9 C 1.39701 * 119.90795 * 359.72047 * 8 6 5 10 10 C 1.47531 * 120.19009 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00151 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00255 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47302 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46935 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47003 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99540 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99981 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99784 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47249 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46896 * 119.99828 * 20 18 16 23 23 H 1.48491 * 109.46932 * 239.99947 * 20 18 16 24 24 H 1.09003 * 109.47422 * 300.00335 * 1 2 3 25 25 H 1.09007 * 109.47148 * 60.00057 * 1 2 3 26 26 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.95345 * 359.97274 * 4 3 2 28 28 H 1.08001 * 119.80285 * 179.70084 * 5 4 3 29 29 H 1.08997 * 109.46980 * 270.27054 * 7 6 5 30 30 H 1.08999 * 109.47320 * 30.27924 * 7 6 5 31 31 H 1.09003 * 109.46944 * 150.27700 * 7 6 5 32 32 H 1.07997 * 120.04449 * 179.74991 * 8 6 5 33 33 H 0.97003 * 120.00006 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47277 * 300.00614 * 13 12 10 35 35 H 1.08999 * 109.46842 * 60.00317 * 13 12 10 36 36 H 1.08995 * 109.46951 * 300.00602 * 14 13 12 37 37 H 1.08999 * 109.46916 * 60.00358 * 14 13 12 38 38 H 1.08998 * 109.47360 * 300.00437 * 15 14 13 39 39 H 1.08999 * 109.47126 * 60.00364 * 15 14 13 40 40 H 0.97001 * 119.99856 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9207 3.6033 -0.0048 6 6 3.3038 3.6836 0.0009 7 6 3.9768 5.0320 0.0014 8 6 4.0668 2.5362 0.0004 9 6 3.4441 1.2857 -0.0001 10 6 4.2550 0.0532 -0.0013 11 8 3.7094 -1.0336 -0.0022 12 7 5.6004 0.1316 -0.0014 13 6 6.4057 -1.0923 -0.0020 14 6 7.8911 -0.7255 -0.0013 15 6 8.7319 -2.0037 -0.0026 16 6 10.1951 -1.6425 -0.0025 17 1 10.4950 -0.6050 -0.0013 18 6 11.1505 -2.6365 -0.0041 19 7 10.7851 -3.8998 -0.0061 20 14 12.9641 -2.1887 -0.0034 21 1 13.1091 -0.7107 -0.0016 22 1 13.6124 -2.7515 1.2083 23 1 13.6124 -2.7477 -1.2167 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2138 2.3195 0.0005 28 1 1.3304 4.5077 -0.0093 29 1 4.1391 5.3574 -1.0261 30 1 3.3428 5.7544 0.5156 31 1 4.9354 4.9594 0.5152 32 1 5.1447 2.6036 0.0008 33 1 6.0357 0.9985 -0.0003 34 1 6.1761 -1.6786 0.8877 35 1 6.1760 -1.6778 -0.8922 36 1 8.1208 -0.1389 -0.8907 37 1 8.1204 -0.1402 0.8892 38 1 8.5022 -2.5907 0.8867 39 1 8.5026 -2.5886 -0.8933 40 1 11.4573 -4.5991 -0.0069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:39 Heat of formation + Delta-G solvation = -89.601942 kcal Electronic energy + Delta-G solvation = -20555.832321 eV Core-core repulsion = 17334.328548 eV Total energy + Delta-G solvation = -3221.503773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.62551 -40.04928 -38.61920 -36.93999 -35.20668 -33.46107 -32.88059 -32.03435 -28.89046 -28.42461 -26.81997 -25.61489 -24.28398 -22.48814 -22.21497 -21.12487 -19.35604 -18.52600 -17.94850 -17.47431 -16.90808 -16.60165 -16.50025 -16.27207 -15.74476 -15.31866 -15.26047 -14.68895 -14.61228 -14.41865 -14.18360 -13.76332 -13.55304 -13.11806 -13.02151 -12.84088 -12.76829 -12.55705 -12.51088 -12.34202 -12.08177 -11.76874 -11.68896 -11.58054 -11.22346 -10.81776 -10.56286 -10.24032 -9.97875 -9.06583 -8.19341 -6.31076 -0.15647 0.36914 1.42063 1.42495 1.55858 1.86791 2.15943 2.35947 2.43104 2.80431 3.14448 3.65312 3.76111 3.91293 4.10161 4.17753 4.19600 4.32966 4.36497 4.36638 4.45655 4.53321 4.66130 4.71821 4.92685 4.93312 4.95465 4.97032 5.06357 5.15870 5.24695 5.30104 5.42130 5.52286 5.57393 5.69724 5.78707 5.83814 6.21941 6.39978 6.59428 6.86504 7.25074 7.38609 8.93199 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.003091 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.277877 B = 9056.836142 C =10132.760703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.155 3.845 4 C -0.215 4.215 5 C -0.046 4.046 6 C -0.134 4.134 7 C -0.108 4.108 8 C -0.051 4.051 9 C -0.196 4.196 10 C 0.548 3.452 11 O -0.574 6.574 12 N -0.713 5.713 13 C 0.131 3.869 14 C -0.101 4.101 15 C 0.023 3.977 16 C -0.540 4.540 17 H 0.068 0.932 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.412 0.588 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.069 0.931 38 H -0.008 1.008 39 H -0.009 1.009 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.817 21.358 0.010 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.107 3.893 4 C -0.233 4.233 5 C -0.064 4.064 6 C -0.135 4.135 7 C -0.165 4.165 8 C -0.070 4.070 9 C -0.200 4.200 10 C 0.337 3.663 11 O -0.454 6.454 12 N -0.366 5.366 13 C 0.007 3.993 14 C -0.138 4.138 15 C -0.014 4.014 16 C -0.578 4.578 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.124 0.876 27 H 0.178 0.822 28 H 0.182 0.818 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.165 0.835 33 H 0.250 0.750 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.047 20.207 0.009 29.177 hybrid contribution 0.917 -0.442 -0.009 1.018 sum -20.130 19.765 0.000 28.211 Atomic orbital electron populations 1.23416 0.76680 1.05290 1.02723 1.86346 1.23200 1.26731 1.86991 1.19403 0.91133 0.85744 0.93017 1.21520 1.01441 0.91161 1.09176 1.21465 0.94106 0.97870 0.92984 1.20119 0.94061 0.96121 1.03164 1.20798 1.00868 0.91523 1.03299 1.21300 1.00835 0.89743 0.95079 1.19386 0.91326 0.93662 1.15655 1.18598 0.82393 0.89233 0.76031 1.90776 1.72541 1.30776 1.51313 1.45868 1.05445 1.10388 1.74916 1.21239 0.90964 0.86491 1.00559 1.21601 0.90879 0.99127 1.02240 1.18949 0.94336 0.93118 0.95041 1.21707 0.92274 0.93419 1.50351 0.91389 1.26054 1.04601 0.94823 0.94766 1.70126 1.35385 1.00377 1.51766 0.85334 0.78676 0.79027 0.77604 1.18049 1.20573 1.20586 0.90865 0.90876 0.87604 0.82237 0.81783 0.90318 0.89848 0.90951 0.83453 0.75034 0.93375 0.93372 0.91206 0.91196 0.99009 0.99012 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -9.34 8.57 -68.75 -0.59 -9.93 16 3 C 0.15 4.03 6.70 22.85 0.15 4.18 16 4 C -0.21 -3.61 9.03 22.34 0.20 -3.41 16 5 C -0.05 -0.61 9.68 22.30 0.22 -0.39 16 6 C -0.13 -2.00 5.87 -19.90 -0.12 -2.12 16 7 C -0.11 -0.96 10.00 71.24 0.71 -0.25 16 8 C -0.05 -1.02 9.18 22.52 0.21 -0.81 16 9 C -0.20 -5.49 5.89 -20.01 -0.12 -5.61 16 10 C 0.55 19.55 7.76 86.69 0.67 20.22 16 11 O -0.57 -25.62 15.16 16.90 0.26 -25.36 16 12 N -0.71 -22.83 5.51 -466.26 -2.57 -25.40 16 13 C 0.13 5.08 5.67 86.38 0.49 5.57 16 14 C -0.10 -4.05 5.27 30.60 0.16 -3.89 16 15 C 0.02 1.24 4.97 29.85 0.15 1.39 16 16 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 18 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 19 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 20 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 25 H 0.07 0.89 7.66 -2.38 -0.02 0.87 16 26 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.16 1.71 6.30 -2.91 -0.02 1.69 16 28 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 31 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.15 2.33 6.40 -2.91 -0.02 2.31 16 33 H 0.41 10.10 6.50 -92.71 -0.60 9.49 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -78.83 337.73 4.38 -74.45 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.43 Total: 11.69 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 4.54 Total: -13.94 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.28 Total: -83.17 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.33 Total: -35.29 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -78.83 4.38 -74.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.150 kcal (2) G-P(sol) polarization free energy of solvation -78.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds