Wall clock time and date at job start Mon Mar 30 2020 07:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99883 * 2 1 4 4 C 1.38471 * 119.98421 * 0.02562 * 3 2 1 5 5 C 1.39557 * 119.78963 * 179.97438 * 4 3 2 6 6 C 1.47740 * 120.12483 * 180.02562 * 5 4 3 7 7 O 1.21597 * 119.99925 * 312.51072 * 6 5 4 8 8 N 1.34774 * 120.00053 * 132.51036 * 6 5 4 9 9 C 1.36869 * 120.00205 * 184.56182 * 8 6 5 10 10 H 1.07996 * 120.00505 * 222.92136 * 9 8 6 11 11 C 1.39048 * 119.99897 * 42.91841 * 9 8 6 12 12 N 1.31372 * 119.99876 * 14.99383 * 11 9 8 13 13 Si 1.86807 * 120.00299 * 194.99293 * 11 9 8 14 14 H 1.48495 * 109.46642 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46994 * 120.00112 * 13 11 9 16 16 H 1.48490 * 109.47163 * 240.00026 * 13 11 9 17 17 C 1.46501 * 120.00274 * 4.56414 * 8 6 5 18 18 C 1.52998 * 109.47454 * 115.33269 * 17 8 6 19 19 C 1.53002 * 109.47048 * 235.33642 * 17 8 6 20 20 C 1.39672 * 119.75036 * 0.02562 * 5 4 3 21 21 C 1.37940 * 119.96189 * 0.28174 * 20 5 4 22 22 C 1.38305 * 120.20961 * 359.46128 * 21 20 5 23 23 C 1.50698 * 119.87464 * 180.26452 * 22 21 20 24 24 H 1.08993 * 109.47533 * 59.99518 * 1 2 3 25 25 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47201 * 299.99724 * 1 2 3 27 27 H 1.08002 * 120.10501 * 0.02562 * 4 3 2 28 28 H 0.97004 * 119.99689 * 180.02562 * 12 11 9 29 29 H 1.09006 * 109.46450 * 355.33337 * 17 8 6 30 30 H 1.09003 * 109.46951 * 65.67257 * 18 17 8 31 31 H 1.09000 * 109.47137 * 185.67564 * 18 17 8 32 32 H 1.08998 * 109.47155 * 305.67401 * 18 17 8 33 33 H 1.09000 * 109.46907 * 63.85834 * 19 17 8 34 34 H 1.09003 * 109.46755 * 183.85682 * 19 17 8 35 35 H 1.08996 * 109.47339 * 303.85620 * 19 17 8 36 36 H 1.08008 * 120.02100 * 179.97438 * 20 5 4 37 37 H 1.07999 * 119.89843 * 179.70072 * 21 20 5 38 38 H 1.09001 * 109.47138 * 270.25492 * 23 22 21 39 39 H 1.08996 * 109.47208 * 30.25142 * 23 22 21 40 40 H 1.09000 * 109.47397 * 150.25214 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3720 0.0005 5 6 1.9292 3.6133 0.0011 6 6 1.1315 4.8568 0.0022 7 8 0.2039 4.9848 -0.7736 8 7 1.4318 5.8493 0.8631 9 6 0.6371 6.9617 0.9293 10 1 1.0850 7.9423 0.9938 11 6 -0.7470 6.8293 0.9134 12 7 -1.2971 5.6564 1.1310 13 14 -1.8242 8.3193 0.5826 14 1 -0.9664 9.5126 0.3697 15 1 -2.6448 8.0771 -0.6312 16 1 -2.7175 8.5523 1.7456 17 6 2.6089 5.7376 1.7281 18 6 3.6191 6.8253 1.3578 19 6 2.1866 5.9096 3.1887 20 6 3.3246 3.6756 0.0005 21 6 4.0661 2.5125 -0.0064 22 6 3.4324 1.2832 -0.0016 23 6 4.2500 0.0173 -0.0032 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2128 2.3172 0.0014 28 1 -2.2627 5.5640 1.1196 29 1 3.0657 4.7569 1.5950 30 1 3.1984 7.8047 1.5858 31 1 4.5350 6.6808 1.9308 32 1 3.8436 6.7653 0.2929 33 1 1.5201 5.0952 3.4725 34 1 3.0704 5.8950 3.8265 35 1 1.6686 6.8612 3.3075 36 1 3.8227 4.6340 0.0005 37 1 5.1449 2.5619 -0.0117 38 1 4.4464 -0.2871 -1.0313 39 1 5.1951 0.1945 0.5100 40 1 3.6999 -0.7712 0.5104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:32 Heat of formation + Delta-G solvation = -35.151642 kcal Electronic energy + Delta-G solvation = -22432.178110 eV Core-core repulsion = 19213.035479 eV Total energy + Delta-G solvation = -3219.142631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04870 -38.55756 -36.70217 -35.15426 -32.78821 -31.93502 -29.91594 -29.82394 -27.39741 -27.00694 -26.41901 -24.60809 -21.98459 -21.80522 -20.42857 -19.60084 -17.77260 -16.08392 -15.93390 -15.53053 -15.37651 -15.21532 -14.61201 -14.13032 -13.74630 -13.50676 -13.31914 -13.17360 -12.99118 -12.69532 -12.24110 -12.00202 -11.84013 -11.69005 -11.58181 -11.35266 -11.16274 -10.98893 -10.90945 -10.85481 -10.64050 -10.49978 -10.37389 -10.18924 -9.77912 -8.77450 -8.40116 -8.08748 -7.65538 -7.08888 -6.11023 -3.84655 1.57532 1.80384 3.29555 3.38921 3.40666 3.52455 3.92839 4.23862 4.59349 4.91361 5.14212 5.17957 5.29405 5.32253 5.40849 5.51616 5.60131 5.65438 5.69207 5.78302 5.80438 5.88952 5.94990 5.99837 6.10903 6.18191 6.26270 6.41682 6.49946 6.55877 6.59496 6.74113 6.78585 6.96722 7.01613 7.10007 7.15450 7.63352 7.67356 8.28454 9.06849 9.19776 9.66195 10.31662 10.97974 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.006381 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.948685 B = 4386.867880 C = 5307.944051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.115 3.885 4 C -0.159 4.159 5 C -0.054 4.054 6 C 0.509 3.491 7 O -0.533 6.533 8 N -0.437 5.437 9 C -0.334 4.334 10 H 0.080 0.920 11 C 0.065 3.935 12 N -0.832 5.832 13 Si 0.911 3.089 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.286 1.286 17 C 0.105 3.895 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.099 4.099 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.134 0.866 28 H 0.262 0.738 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 -8.108 1.251 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.233 6.233 3 C 0.071 3.929 4 C -0.179 4.179 5 C -0.058 4.058 6 C 0.297 3.703 7 O -0.412 6.412 8 N -0.158 5.158 9 C -0.461 4.461 10 H 0.098 0.902 11 C -0.145 4.145 12 N -0.466 5.466 13 Si 0.738 3.262 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.212 1.212 17 C 0.000 4.000 18 C -0.213 4.213 19 C -0.201 4.201 20 C -0.157 4.157 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.156 4.156 24 H 0.075 0.925 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.525 -8.309 0.879 11.937 hybrid contribution -0.989 0.850 -0.030 1.304 sum 7.536 -7.459 0.850 10.637 Atomic orbital electron populations 1.23034 0.78515 1.03258 1.02065 1.85976 1.21232 1.26953 1.89172 1.18697 0.91657 0.83995 0.98583 1.21317 1.00560 0.90892 1.05117 1.20387 0.93712 0.95003 0.96718 1.17800 0.85786 0.83616 0.83126 1.90610 1.30173 1.80125 1.40245 1.43223 1.23486 1.17705 1.31418 1.18933 0.87225 0.85549 1.54420 0.90215 1.25260 0.97694 0.96625 0.94884 1.69839 1.10984 1.23706 1.42079 0.86163 0.80182 0.81963 0.77866 1.19543 1.20747 1.21231 1.21508 0.88482 0.98617 0.91358 1.22094 0.97980 1.00508 1.00677 1.21923 0.99721 1.03186 0.95313 1.21357 0.93058 0.98631 1.02695 1.20712 0.99327 0.90945 1.00246 1.19198 0.90412 0.95979 1.06841 1.20547 0.98527 0.94726 1.01783 0.92490 0.88645 0.92450 0.84850 0.92744 0.89871 0.92123 0.93199 0.93098 0.93150 0.93994 0.91560 0.85195 0.85593 0.91865 0.92028 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.06 9.52 -19.44 -0.19 -5.24 16 3 C 0.12 2.03 6.65 -39.28 -0.26 1.77 16 4 C -0.16 -3.26 8.70 -39.00 -0.34 -3.60 16 5 C -0.05 -1.19 5.13 -104.99 -0.54 -1.73 16 6 C 0.51 13.42 6.40 -12.38 -0.08 13.34 16 7 O -0.53 -16.28 14.78 5.28 0.08 -16.20 16 8 N -0.44 -10.95 2.45 -108.83 -0.27 -11.22 16 9 C -0.33 -9.05 7.73 -15.00 -0.12 -9.17 16 10 H 0.08 2.08 7.21 -52.49 -0.38 1.71 16 11 C 0.07 1.83 4.49 -17.45 -0.08 1.75 16 12 N -0.83 -24.51 11.52 55.50 0.64 -23.87 16 13 Si 0.91 21.83 29.58 -169.99 -5.03 16.81 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.10 2.09 2.43 -67.93 -0.17 1.93 16 18 C -0.15 -2.62 8.64 37.16 0.32 -2.30 16 19 C -0.14 -2.75 9.16 37.16 0.34 -2.41 16 20 C -0.14 -2.48 7.29 -39.16 -0.29 -2.77 16 21 C -0.09 -1.42 9.67 -39.67 -0.38 -1.81 16 22 C -0.12 -1.92 5.90 -104.38 -0.62 -2.54 16 23 C -0.10 -1.20 9.78 36.00 0.35 -0.85 16 24 H 0.06 0.77 7.66 -51.93 -0.40 0.38 16 25 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 27 H 0.13 2.87 6.29 -52.49 -0.33 2.54 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.08 1.57 4.06 -51.93 -0.21 1.36 16 30 H 0.06 1.07 7.45 -51.93 -0.39 0.69 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.86 7.57 -51.93 -0.39 0.47 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.36 7.43 -51.93 -0.39 0.97 16 36 H 0.13 2.18 5.69 -52.48 -0.30 1.88 16 37 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.07 0.81 7.52 -51.93 -0.39 0.42 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -33.11 324.66 -6.39 -39.50 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.66 Total: 2.36 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.86 Total: -7.03 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.37 Total: -35.09 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.11 Total: -21.44 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.11 -6.39 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.347 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds