Wall clock time and date at job start Mon Mar 30 2020 07:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99883 * 2 1 4 4 C 1.38471 * 119.98421 * 0.02562 * 3 2 1 5 5 C 1.39557 * 119.78963 * 179.97438 * 4 3 2 6 6 C 1.47740 * 120.12483 * 180.02562 * 5 4 3 7 7 O 1.21597 * 119.99925 * 312.51072 * 6 5 4 8 8 N 1.34774 * 120.00053 * 132.51036 * 6 5 4 9 9 C 1.36869 * 120.00205 * 184.56182 * 8 6 5 10 10 H 1.07996 * 120.00505 * 222.92136 * 9 8 6 11 11 C 1.39048 * 119.99897 * 42.91841 * 9 8 6 12 12 N 1.31372 * 119.99876 * 14.99383 * 11 9 8 13 13 Si 1.86807 * 120.00299 * 194.99293 * 11 9 8 14 14 H 1.48495 * 109.46642 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46994 * 120.00112 * 13 11 9 16 16 H 1.48490 * 109.47163 * 240.00026 * 13 11 9 17 17 C 1.46501 * 120.00274 * 4.56414 * 8 6 5 18 18 C 1.52998 * 109.47454 * 115.33269 * 17 8 6 19 19 C 1.53002 * 109.47048 * 235.33642 * 17 8 6 20 20 C 1.39672 * 119.75036 * 0.02562 * 5 4 3 21 21 C 1.37940 * 119.96189 * 0.28174 * 20 5 4 22 22 C 1.38305 * 120.20961 * 359.46128 * 21 20 5 23 23 C 1.50698 * 119.87464 * 180.26452 * 22 21 20 24 24 H 1.08993 * 109.47533 * 59.99518 * 1 2 3 25 25 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47201 * 299.99724 * 1 2 3 27 27 H 1.08002 * 120.10501 * 0.02562 * 4 3 2 28 28 H 0.97004 * 119.99689 * 180.02562 * 12 11 9 29 29 H 1.09006 * 109.46450 * 355.33337 * 17 8 6 30 30 H 1.09003 * 109.46951 * 65.67257 * 18 17 8 31 31 H 1.09000 * 109.47137 * 185.67564 * 18 17 8 32 32 H 1.08998 * 109.47155 * 305.67401 * 18 17 8 33 33 H 1.09000 * 109.46907 * 63.85834 * 19 17 8 34 34 H 1.09003 * 109.46755 * 183.85682 * 19 17 8 35 35 H 1.08996 * 109.47339 * 303.85620 * 19 17 8 36 36 H 1.08008 * 120.02100 * 179.97438 * 20 5 4 37 37 H 1.07999 * 119.89843 * 179.70072 * 21 20 5 38 38 H 1.09001 * 109.47138 * 270.25492 * 23 22 21 39 39 H 1.08996 * 109.47208 * 30.25142 * 23 22 21 40 40 H 1.09000 * 109.47397 * 150.25214 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3720 0.0005 5 6 1.9292 3.6133 0.0011 6 6 1.1315 4.8568 0.0022 7 8 0.2039 4.9848 -0.7736 8 7 1.4318 5.8493 0.8631 9 6 0.6371 6.9617 0.9293 10 1 1.0850 7.9423 0.9938 11 6 -0.7470 6.8293 0.9134 12 7 -1.2971 5.6564 1.1310 13 14 -1.8242 8.3193 0.5826 14 1 -0.9664 9.5126 0.3697 15 1 -2.6448 8.0771 -0.6312 16 1 -2.7175 8.5523 1.7456 17 6 2.6089 5.7376 1.7281 18 6 3.6191 6.8253 1.3578 19 6 2.1866 5.9096 3.1887 20 6 3.3246 3.6756 0.0005 21 6 4.0661 2.5125 -0.0064 22 6 3.4324 1.2832 -0.0016 23 6 4.2500 0.0173 -0.0032 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2128 2.3172 0.0014 28 1 -2.2627 5.5640 1.1196 29 1 3.0657 4.7569 1.5950 30 1 3.1984 7.8047 1.5858 31 1 4.5350 6.6808 1.9308 32 1 3.8436 6.7653 0.2929 33 1 1.5201 5.0952 3.4725 34 1 3.0704 5.8950 3.8265 35 1 1.6686 6.8612 3.3075 36 1 3.8227 4.6340 0.0005 37 1 5.1449 2.5619 -0.0117 38 1 4.4464 -0.2871 -1.0313 39 1 5.1951 0.1945 0.5100 40 1 3.6999 -0.7712 0.5104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:32 Heat of formation + Delta-G solvation = -56.082206 kcal Electronic energy + Delta-G solvation = -22433.085727 eV Core-core repulsion = 19213.035479 eV Total energy + Delta-G solvation = -3220.050249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48792 -40.22212 -38.09564 -37.02679 -34.54463 -33.52237 -31.75194 -31.19065 -28.59451 -28.44195 -27.87948 -26.43487 -23.48734 -23.18402 -21.99690 -21.34645 -19.37720 -17.84358 -17.46161 -17.00441 -16.77610 -16.63642 -16.50035 -15.86296 -15.31223 -15.08466 -14.69804 -14.44568 -14.35791 -14.28725 -13.76538 -13.51218 -13.15388 -13.02239 -12.98836 -12.93424 -12.81376 -12.61528 -12.57059 -12.21878 -12.15873 -12.08810 -12.01542 -11.96367 -11.34525 -10.82648 -10.16829 -9.72988 -9.11678 -9.02844 -8.21382 -5.98471 0.13529 0.43242 1.34732 1.41740 1.50084 2.20199 2.33623 2.41971 2.80761 3.17421 3.27960 3.81814 3.91236 4.06874 4.16359 4.23811 4.27200 4.30845 4.41373 4.48596 4.59903 4.63419 4.68441 4.80297 4.86338 4.91501 4.94965 5.01074 5.08942 5.12029 5.31702 5.33394 5.45836 5.51309 5.53023 5.55411 5.59944 5.81211 6.21464 6.34989 7.01559 7.21242 7.66011 8.33444 8.87797 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.006381 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.948685 B = 4386.867880 C = 5307.944051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.317 6.317 3 C 0.110 3.890 4 C -0.182 4.182 5 C -0.090 4.090 6 C 0.497 3.503 7 O -0.595 6.595 8 N -0.448 5.448 9 C -0.342 4.342 10 H 0.086 0.914 11 C 0.011 3.989 12 N -0.871 5.871 13 Si 0.971 3.029 14 H -0.253 1.253 15 H -0.297 1.297 16 H -0.274 1.274 17 C 0.096 3.904 18 C -0.146 4.146 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.077 4.077 22 C -0.114 4.114 23 C -0.097 4.097 24 H 0.045 0.955 25 H 0.135 0.865 26 H 0.044 0.956 27 H 0.104 0.896 28 H 0.256 0.744 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.142 0.858 37 H 0.177 0.823 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.826 -8.957 1.873 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.231 6.231 3 C 0.065 3.935 4 C -0.201 4.201 5 C -0.093 4.093 6 C 0.286 3.714 7 O -0.478 6.478 8 N -0.168 5.168 9 C -0.470 4.470 10 H 0.104 0.896 11 C -0.195 4.195 12 N -0.507 5.507 13 Si 0.796 3.204 14 H -0.177 1.177 15 H -0.224 1.224 16 H -0.200 1.200 17 C -0.007 4.007 18 C -0.203 4.203 19 C -0.194 4.194 20 C -0.154 4.154 21 C -0.094 4.094 22 C -0.115 4.115 23 C -0.153 4.153 24 H 0.064 0.936 25 H 0.153 0.847 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.160 0.840 37 H 0.194 0.806 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.284 -9.140 1.543 15.389 hybrid contribution -2.040 1.000 -0.224 2.282 sum 10.244 -8.141 1.319 13.151 Atomic orbital electron populations 1.23210 0.77449 1.05432 1.00977 1.85976 1.22278 1.25936 1.88907 1.18880 0.92721 0.83423 0.98460 1.21172 0.99555 0.92129 1.07292 1.20106 0.95297 0.93097 1.00833 1.18590 0.85385 0.85123 0.82275 1.90538 1.33004 1.81630 1.42677 1.43504 1.24474 1.17020 1.31771 1.19231 0.87701 0.86651 1.53439 0.89642 1.26145 0.99321 0.99090 0.94936 1.69975 1.10617 1.25883 1.44234 0.85234 0.78562 0.79399 0.77188 1.17673 1.22393 1.19992 1.21845 0.87300 1.00765 0.90776 1.22023 0.98568 0.98461 1.01298 1.21869 1.00878 1.00918 0.95753 1.21480 0.91160 1.00568 1.02230 1.21212 1.01482 0.89285 0.97456 1.19795 0.89649 0.98091 1.03922 1.20651 0.99084 0.92459 1.03153 0.93627 0.84671 0.93679 0.87817 0.93440 0.88428 0.93272 0.88830 0.93277 0.95876 0.89483 0.93465 0.84018 0.80565 0.90370 0.88945 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.81 113.37 1.11 1.76 16 2 O -0.32 -9.78 9.52 -92.48 -0.88 -10.66 16 3 C 0.11 3.81 6.65 22.47 0.15 3.96 16 4 C -0.18 -7.80 8.70 22.64 0.20 -7.60 16 5 C -0.09 -4.03 5.13 -20.10 -0.10 -4.13 16 6 C 0.50 27.53 6.40 86.76 0.56 28.08 16 7 O -0.60 -38.93 14.78 -4.02 -0.06 -38.99 16 8 N -0.45 -23.08 2.45 -616.48 -1.51 -24.59 16 9 C -0.34 -19.13 7.73 84.10 0.65 -18.48 16 10 H 0.09 4.54 7.21 -2.91 -0.02 4.52 16 11 C 0.01 0.61 4.49 84.96 0.38 0.99 16 12 N -0.87 -54.50 11.52 21.68 0.25 -54.25 16 13 Si 0.97 46.48 29.58 68.60 2.03 48.51 16 14 H -0.25 -11.23 7.11 99.48 0.71 -10.53 16 15 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 C 0.10 3.75 2.43 44.99 0.11 3.86 16 18 C -0.15 -4.57 8.64 71.98 0.62 -3.95 16 19 C -0.14 -5.13 9.16 71.98 0.66 -4.47 16 20 C -0.14 -4.60 7.29 22.55 0.16 -4.44 16 21 C -0.08 -1.99 9.67 22.21 0.21 -1.77 16 22 C -0.11 -3.15 5.90 -19.71 -0.12 -3.27 16 23 C -0.10 -1.86 9.78 71.24 0.70 -1.17 16 24 H 0.04 1.32 7.66 -2.39 -0.02 1.31 16 25 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.04 1.32 7.66 -2.38 -0.02 1.30 16 27 H 0.10 4.93 6.29 -2.91 -0.02 4.91 16 28 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.10 3.53 4.06 -2.38 -0.01 3.52 16 30 H 0.05 1.65 7.45 -2.39 -0.02 1.63 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.55 7.57 -2.39 -0.02 1.53 16 33 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 1.93 7.43 -2.39 -0.02 1.91 16 36 H 0.14 4.39 5.69 -2.91 -0.02 4.37 16 37 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 40 H 0.06 1.31 7.52 -2.39 -0.02 1.29 16 Total: -1.00 -78.79 324.66 6.16 -72.63 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.04 Total: 17.97 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 5.29 Total: -10.61 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.26 Total: -78.84 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.94 Total: -49.65 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.79 6.16 -72.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.545 kcal (2) G-P(sol) polarization free energy of solvation -78.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds