Wall clock time and date at job start Mon Mar 30 2020 06:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48496 * 109.47210 * 4.98479 * 3 2 1 5 5 H 1.48501 * 109.47225 * 124.98632 * 3 2 1 6 6 H 1.48498 * 109.47018 * 244.98621 * 3 2 1 7 7 C 1.37882 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99514 * 172.31769 * 7 2 1 9 9 C 1.50696 * 119.99770 * 352.32166 * 7 2 1 10 10 C 1.53003 * 115.55164 * 85.33990 * 9 7 2 11 11 N 1.46902 * 109.47013 * 54.24013 * 10 9 7 12 12 C 1.46854 * 110.99971 * 52.30628 * 11 10 9 13 13 C 1.53035 * 109.52179 * 185.83571 * 12 11 10 14 14 C 1.53117 * 109.28000 * 300.82091 * 13 12 11 15 15 C 1.53117 * 109.16251 * 57.65709 * 14 13 12 16 16 H 1.09003 * 109.50440 * 62.27909 * 15 14 13 17 17 C 1.52991 * 109.50325 * 182.40257 * 15 14 13 18 18 F 1.39906 * 109.46926 * 179.79980 * 17 15 14 19 19 F 1.39901 * 109.47581 * 299.80024 * 17 15 14 20 20 F 1.39899 * 109.47309 * 59.80303 * 17 15 14 21 21 C 1.46849 * 110.99795 * 176.51374 * 11 10 9 22 22 C 1.52995 * 117.49989 * 299.66687 * 9 7 2 23 23 C 1.53003 * 117.49878 * 231.00804 * 9 7 2 24 24 H 0.97006 * 119.99874 * 177.38052 * 1 2 3 25 25 H 1.08995 * 109.47172 * 174.24425 * 10 9 7 26 26 H 1.08996 * 109.46878 * 294.24385 * 10 9 7 27 27 H 1.09001 * 109.46322 * 305.85636 * 12 11 10 28 28 H 1.08996 * 109.46087 * 65.82245 * 12 11 10 29 29 H 1.09008 * 109.49918 * 180.87862 * 13 12 11 30 30 H 1.09002 * 109.50190 * 60.76792 * 13 12 11 31 31 H 1.09001 * 109.52308 * 297.74820 * 14 13 12 32 32 H 1.09001 * 109.51968 * 177.56308 * 14 13 12 33 33 H 1.09000 * 109.46181 * 294.17757 * 21 11 10 34 34 H 1.08997 * 109.46115 * 54.14656 * 21 11 10 35 35 H 1.08996 * 117.49985 * 0.02562 * 22 9 7 36 36 H 1.09005 * 117.49888 * 145.02341 * 22 9 7 37 37 H 1.08997 * 117.49940 * 214.98328 * 23 9 7 38 38 H 1.09006 * 117.49592 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2887 2.7438 0.1216 5 1 3.1918 1.6451 1.1471 6 1 3.0093 1.7504 -1.2687 7 6 2.0045 -1.1941 0.0005 8 1 3.0772 -1.1982 -0.1245 9 6 1.2611 -2.4932 0.1755 10 6 0.6797 -3.0983 -1.1039 11 7 1.7443 -3.2404 -2.1061 12 6 2.8957 -3.9639 -1.5517 13 6 4.0372 -3.9662 -2.5710 14 6 3.5613 -4.6387 -3.8616 15 6 2.3324 -3.8953 -4.3921 16 1 2.6049 -2.8680 -4.6341 17 6 1.8142 -4.5968 -5.6491 18 9 0.6887 -3.9195 -6.1306 19 9 2.8130 -4.5966 -6.6287 20 9 1.4669 -5.9157 -5.3375 21 6 1.2402 -3.8950 -3.3201 22 6 0.4700 -2.6855 1.4708 23 6 1.7709 -3.4602 1.2460 24 1 -0.4850 -0.8392 -0.0384 25 1 0.2559 -4.0778 -0.8825 26 1 -0.1006 -2.4443 -1.4930 27 1 3.2269 -3.4730 -0.6366 28 1 2.6062 -4.9908 -1.3285 29 1 4.8862 -4.5167 -2.1654 30 1 4.3367 -2.9401 -2.7843 31 1 3.2987 -5.6765 -3.6562 32 1 4.3573 -4.6039 -4.6054 33 1 0.9584 -4.9222 -3.0885 34 1 0.3689 -3.3541 -3.6893 35 1 0.4868 -1.8722 2.1963 36 1 -0.4646 -3.2435 1.4117 37 1 1.6917 -4.5274 1.0390 38 1 2.6437 -3.1565 1.8240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088420229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:52 Heat of formation + Delta-G solvation = -140.801861 kcal Electronic energy + Delta-G solvation = -23023.913958 eV Core-core repulsion = 19258.333249 eV Total energy + Delta-G solvation = -3765.580709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.08828 -47.57469 -47.54499 -39.00634 -36.67765 -33.02183 -31.79246 -31.34154 -26.53988 -25.76515 -24.74951 -22.77503 -22.12057 -21.24240 -19.83220 -19.24979 -18.26565 -18.21971 -17.44769 -16.45190 -15.28443 -14.69751 -14.61140 -14.45133 -14.05996 -13.94443 -13.92831 -13.72791 -13.71003 -13.68200 -13.67392 -13.05204 -12.69790 -12.48865 -12.31656 -11.71887 -11.39400 -11.22996 -10.86392 -10.75627 -10.60873 -10.46023 -10.41045 -10.26639 -10.06277 -9.43909 -8.46694 -8.43807 -8.24609 -7.62442 -6.25838 -3.96236 2.78048 3.48152 3.49244 3.67303 3.76632 4.00256 4.09545 4.51558 4.59609 4.82094 4.87719 5.12634 5.13174 5.34833 5.39504 5.43566 5.64974 5.76811 5.81362 5.85788 5.97969 5.99657 6.07723 6.11417 6.27497 6.32953 6.45705 6.51992 6.53291 6.77245 6.87429 7.23266 7.24458 7.69547 7.78075 8.33802 8.50631 8.95664 9.75170 11.13284 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.005544 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.735119 B = 5049.383861 C = 5395.643361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.027 3.973 3 Si 1.063 2.937 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.029 3.971 10 C 0.100 3.900 11 N -0.505 5.505 12 C 0.055 3.945 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.128 4.128 16 H 0.124 0.876 17 C 0.454 3.546 18 F -0.183 7.183 19 F -0.186 7.186 20 F -0.186 7.186 21 C 0.058 3.942 22 C -0.179 4.179 23 C -0.202 4.202 24 H 0.272 0.728 25 H 0.002 0.998 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 -9.682 -8.070 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.178 4.178 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.029 3.971 10 C -0.027 4.027 11 N -0.228 5.228 12 C -0.073 4.073 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.148 4.148 16 H 0.142 0.858 17 C 0.400 3.600 18 F -0.165 7.165 19 F -0.167 7.167 20 F -0.167 7.167 21 C -0.071 4.071 22 C -0.217 4.217 23 C -0.239 4.239 24 H 0.083 0.917 25 H 0.021 0.979 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.944 -7.566 -8.189 12.197 hybrid contribution -0.282 -2.699 -0.121 2.716 sum 4.662 -10.266 -8.311 14.006 Atomic orbital electron populations 1.70746 1.06869 1.30883 1.45872 1.25637 0.96497 1.02031 0.93602 0.83624 0.74952 0.75776 0.76395 1.21066 1.21739 1.21512 1.21044 0.94007 0.89339 1.54126 0.93034 1.19100 0.97781 0.95329 0.84939 1.21767 0.92233 0.96050 0.92686 1.61670 1.07803 1.48727 1.04596 1.22195 0.90984 0.95322 0.98796 1.21565 0.97893 1.01571 0.93990 1.21645 0.95504 0.99278 0.98969 1.22514 0.98788 1.02337 0.91131 0.85820 1.20710 0.75491 0.77372 0.86431 1.93182 1.53637 1.79882 1.89770 1.93156 1.61354 1.96440 1.65796 1.93149 1.92444 1.38229 1.92917 1.21993 0.95539 0.97902 0.91628 1.22786 0.92963 1.02025 1.03904 1.22978 0.97990 0.95333 1.07609 0.91743 0.97950 0.91034 0.88110 0.96433 0.91349 0.90431 0.91354 0.90932 0.94749 0.90016 0.89677 0.91811 0.91912 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.15 13.49 55.43 0.75 -25.40 16 2 C 0.03 0.74 5.38 -17.82 -0.10 0.65 16 3 Si 1.06 24.63 29.91 -169.99 -5.08 19.54 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.55 -14.31 8.05 -34.44 -0.28 -14.58 16 8 H 0.05 1.37 7.72 -52.49 -0.41 0.97 16 9 C 0.03 0.67 0.16 -155.66 -0.03 0.65 16 10 C 0.10 2.12 4.96 -3.82 -0.02 2.10 16 11 N -0.50 -9.55 4.44 -234.66 -1.04 -10.59 16 12 C 0.05 0.93 4.75 -3.83 -0.02 0.91 16 13 C -0.11 -1.55 6.09 -26.65 -0.16 -1.72 16 14 C -0.12 -1.44 5.04 -26.61 -0.13 -1.57 16 15 C -0.13 -1.74 2.33 -90.54 -0.21 -1.95 16 16 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 17 C 0.45 5.99 2.69 37.15 0.10 6.09 16 18 F -0.18 -2.58 16.82 2.25 0.04 -2.54 16 19 F -0.19 -2.40 16.86 2.25 0.04 -2.36 16 20 F -0.19 -2.50 16.22 2.25 0.04 -2.47 16 21 C 0.06 0.93 4.50 -3.83 -0.02 0.91 16 22 C -0.18 -3.99 8.90 -26.70 -0.24 -4.23 16 23 C -0.20 -4.16 8.15 -26.69 -0.22 -4.37 16 24 H 0.27 7.74 6.12 -40.82 -0.25 7.49 16 25 H 0.00 0.05 8.09 -51.93 -0.42 -0.37 16 26 H 0.07 1.66 7.51 -51.93 -0.39 1.27 16 27 H 0.10 1.94 5.21 -51.93 -0.27 1.67 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.83 7.74 -51.93 -0.40 0.43 16 32 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 33 H 0.03 0.54 7.78 -51.93 -0.40 0.13 16 34 H 0.08 1.33 7.81 -51.93 -0.41 0.93 16 35 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -27.60 311.05 -7.43 -35.03 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.53 Total: 1.22 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.31 Total: -17.12 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.29 Total: -36.00 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.11 Total: -7.37 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.60 -7.43 -35.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088420229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.770 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds