Wall clock time and date at job start Mon Mar 30 2020 06:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48496 * 109.47210 * 4.98479 * 3 2 1 5 5 H 1.48501 * 109.47225 * 124.98632 * 3 2 1 6 6 H 1.48498 * 109.47018 * 244.98621 * 3 2 1 7 7 C 1.37882 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99514 * 172.31769 * 7 2 1 9 9 C 1.50696 * 119.99770 * 352.32166 * 7 2 1 10 10 C 1.53003 * 115.55164 * 85.33990 * 9 7 2 11 11 N 1.46902 * 109.47013 * 54.24013 * 10 9 7 12 12 C 1.46854 * 110.99971 * 52.30628 * 11 10 9 13 13 C 1.53035 * 109.52179 * 185.83571 * 12 11 10 14 14 C 1.53117 * 109.28000 * 300.82091 * 13 12 11 15 15 C 1.53117 * 109.16251 * 57.65709 * 14 13 12 16 16 H 1.09003 * 109.50440 * 62.27909 * 15 14 13 17 17 C 1.52991 * 109.50325 * 182.40257 * 15 14 13 18 18 F 1.39906 * 109.46926 * 179.79980 * 17 15 14 19 19 F 1.39901 * 109.47581 * 299.80024 * 17 15 14 20 20 F 1.39899 * 109.47309 * 59.80303 * 17 15 14 21 21 C 1.46849 * 110.99795 * 176.51374 * 11 10 9 22 22 C 1.52995 * 117.49989 * 299.66687 * 9 7 2 23 23 C 1.53003 * 117.49878 * 231.00804 * 9 7 2 24 24 H 0.97006 * 119.99874 * 177.38052 * 1 2 3 25 25 H 1.08995 * 109.47172 * 174.24425 * 10 9 7 26 26 H 1.08996 * 109.46878 * 294.24385 * 10 9 7 27 27 H 1.09001 * 109.46322 * 305.85636 * 12 11 10 28 28 H 1.08996 * 109.46087 * 65.82245 * 12 11 10 29 29 H 1.09008 * 109.49918 * 180.87862 * 13 12 11 30 30 H 1.09002 * 109.50190 * 60.76792 * 13 12 11 31 31 H 1.09001 * 109.52308 * 297.74820 * 14 13 12 32 32 H 1.09001 * 109.51968 * 177.56308 * 14 13 12 33 33 H 1.09000 * 109.46181 * 294.17757 * 21 11 10 34 34 H 1.08997 * 109.46115 * 54.14656 * 21 11 10 35 35 H 1.08996 * 117.49985 * 0.02562 * 22 9 7 36 36 H 1.09005 * 117.49888 * 145.02341 * 22 9 7 37 37 H 1.08997 * 117.49940 * 214.98328 * 23 9 7 38 38 H 1.09006 * 117.49592 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2887 2.7438 0.1216 5 1 3.1918 1.6451 1.1471 6 1 3.0093 1.7504 -1.2687 7 6 2.0045 -1.1941 0.0005 8 1 3.0772 -1.1982 -0.1245 9 6 1.2611 -2.4932 0.1755 10 6 0.6797 -3.0983 -1.1039 11 7 1.7443 -3.2404 -2.1061 12 6 2.8957 -3.9639 -1.5517 13 6 4.0372 -3.9662 -2.5710 14 6 3.5613 -4.6387 -3.8616 15 6 2.3324 -3.8953 -4.3921 16 1 2.6049 -2.8680 -4.6341 17 6 1.8142 -4.5968 -5.6491 18 9 0.6887 -3.9195 -6.1306 19 9 2.8130 -4.5966 -6.6287 20 9 1.4669 -5.9157 -5.3375 21 6 1.2402 -3.8950 -3.3201 22 6 0.4700 -2.6855 1.4708 23 6 1.7709 -3.4602 1.2460 24 1 -0.4850 -0.8392 -0.0384 25 1 0.2559 -4.0778 -0.8825 26 1 -0.1006 -2.4443 -1.4930 27 1 3.2269 -3.4730 -0.6366 28 1 2.6062 -4.9908 -1.3285 29 1 4.8862 -4.5167 -2.1654 30 1 4.3367 -2.9401 -2.7843 31 1 3.2987 -5.6765 -3.6562 32 1 4.3573 -4.6039 -4.6054 33 1 0.9584 -4.9222 -3.0885 34 1 0.3689 -3.3541 -3.6893 35 1 0.4868 -1.8722 2.1963 36 1 -0.4646 -3.2435 1.4117 37 1 1.6917 -4.5274 1.0390 38 1 2.6437 -3.1565 1.8240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088420229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:52 Heat of formation + Delta-G solvation = -155.262452 kcal Electronic energy + Delta-G solvation = -23024.541016 eV Core-core repulsion = 19258.333249 eV Total energy + Delta-G solvation = -3766.207767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.15167 -48.62926 -48.61627 -40.41311 -38.28487 -34.41525 -33.78443 -32.52917 -28.08232 -27.01175 -26.65576 -24.06937 -23.45422 -22.88131 -21.15569 -20.94427 -19.34577 -19.29290 -18.74698 -18.16887 -16.63029 -16.10186 -15.87966 -15.70516 -15.56798 -15.39831 -15.24559 -15.05482 -14.91667 -14.79138 -14.76071 -14.38440 -14.27676 -14.13305 -13.72138 -13.06744 -12.95655 -12.65715 -12.54395 -12.37887 -12.19211 -11.92585 -11.78733 -11.70586 -11.51080 -11.13159 -10.38545 -10.34031 -10.14973 -9.08158 -8.39015 -6.08426 1.59059 1.65735 1.69598 1.83304 2.61426 2.67310 2.89454 3.02893 3.18179 3.34631 3.43866 3.72720 3.76791 4.02485 4.09347 4.20220 4.28134 4.34434 4.47222 4.52759 4.56249 4.64515 4.67584 4.76954 4.83186 4.86548 4.96969 5.03080 5.08435 5.27175 5.39780 5.46332 5.52217 6.16470 6.31609 6.37194 6.43180 6.86041 7.68563 9.01003 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.005544 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.735119 B = 5049.383861 C = 5395.643361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.021 4.021 3 Si 1.103 2.897 4 H -0.292 1.292 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.042 0.958 9 C 0.007 3.993 10 C 0.112 3.888 11 N -0.524 5.524 12 C 0.055 3.945 13 C -0.106 4.106 14 C -0.110 4.110 15 C -0.123 4.123 16 H 0.121 0.879 17 C 0.462 3.538 18 F -0.190 7.190 19 F -0.181 7.181 20 F -0.185 7.185 21 C 0.060 3.940 22 C -0.187 4.187 23 C -0.172 4.172 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.588 -11.040 -8.803 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.220 4.220 3 Si 0.928 3.072 4 H -0.218 1.218 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.061 0.939 9 C 0.006 3.994 10 C -0.016 4.016 11 N -0.247 5.247 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.148 4.148 15 C -0.143 4.143 16 H 0.139 0.861 17 C 0.408 3.592 18 F -0.172 7.172 19 F -0.162 7.162 20 F -0.167 7.167 21 C -0.069 4.069 22 C -0.225 4.225 23 C -0.209 4.209 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.541 -8.946 -8.926 14.230 hybrid contribution -0.759 -2.327 0.114 2.450 sum 5.782 -11.273 -8.812 15.433 Atomic orbital electron populations 1.70843 1.07754 1.30376 1.48608 1.26760 0.96600 1.05214 0.93438 0.83093 0.74200 0.72576 0.77357 1.21844 1.20193 1.20227 1.21275 0.93708 0.90772 1.52514 0.93938 1.19134 0.98724 0.95391 0.86114 1.21460 0.92198 0.95677 0.92254 1.61589 1.07782 1.50445 1.04932 1.22183 0.91154 0.95030 0.98840 1.21524 0.97381 1.01559 0.93941 1.21642 0.95303 0.99174 0.98631 1.22443 0.98586 1.02685 0.90578 0.86117 1.20530 0.75286 0.77193 0.86215 1.93176 1.54075 1.80066 1.89840 1.93168 1.61087 1.96412 1.65557 1.93153 1.92450 1.38165 1.92913 1.21974 0.96100 0.97754 0.91058 1.22719 0.94588 1.02111 1.03082 1.22934 0.96658 0.96160 1.05135 0.92768 0.96755 0.94084 0.90602 0.95492 0.88826 0.91653 0.90460 0.88721 0.93968 0.91129 0.92160 0.90482 0.89345 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.33 13.49 21.45 0.29 -55.04 16 2 C -0.02 -1.16 5.38 84.66 0.46 -0.70 16 3 Si 1.10 49.91 29.91 68.60 2.05 51.96 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -28.67 8.05 25.60 0.21 -28.46 16 8 H 0.04 2.26 7.72 -2.91 -0.02 2.24 16 9 C 0.01 0.33 0.16 -52.93 -0.01 0.32 16 10 C 0.11 4.75 4.96 86.30 0.43 5.18 16 11 N -0.52 -19.43 4.44 -896.34 -3.98 -23.41 16 12 C 0.06 1.78 4.75 86.32 0.41 2.19 16 13 C -0.11 -2.65 6.09 30.64 0.19 -2.47 16 14 C -0.11 -2.36 5.04 30.67 0.15 -2.21 16 15 C -0.12 -3.10 2.33 -10.74 -0.03 -3.13 16 16 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 17 C 0.46 11.19 2.69 71.98 0.19 11.38 16 18 F -0.19 -5.10 16.82 44.97 0.76 -4.35 16 19 F -0.18 -4.19 16.86 44.97 0.76 -3.43 16 20 F -0.19 -4.54 16.22 44.97 0.73 -3.81 16 21 C 0.06 1.83 4.50 86.33 0.39 2.22 16 22 C -0.19 -8.36 8.90 30.62 0.27 -8.09 16 23 C -0.17 -6.84 8.15 30.62 0.25 -6.59 16 24 H 0.26 15.45 6.12 -92.70 -0.57 14.89 16 25 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 26 H 0.04 1.96 7.51 -2.39 -0.02 1.94 16 27 H 0.08 2.82 5.21 -2.39 -0.01 2.81 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.57 7.74 -2.39 -0.02 1.55 16 32 H 0.09 1.68 7.88 -2.39 -0.02 1.66 16 33 H 0.04 1.23 7.78 -2.39 -0.02 1.21 16 34 H 0.07 2.30 7.81 -2.39 -0.02 2.28 16 35 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 37 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 Total: -1.00 -59.14 311.05 4.77 -54.37 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.25 Total: 14.06 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 2.91 Total: -30.36 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -3.69 Total: -78.45 kcal Atomic # 9 Polarization: -13.82 SS G_CDS: 2.24 Total: -11.58 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -59.14 4.77 -54.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088420229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.889 kcal (2) G-P(sol) polarization free energy of solvation -59.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds