Wall clock time and date at job start Mon Mar 30 2020 07:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38279 * 119.97178 * 2 1 4 4 C 1.38252 * 120.11365 * 179.72654 * 3 2 1 5 5 C 1.38167 * 120.05160 * 0.55130 * 4 3 2 6 6 C 1.38719 * 119.94306 * 359.72287 * 5 4 3 7 7 O 1.35899 * 120.05292 * 179.97438 * 6 5 4 8 8 C 1.42895 * 117.00162 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47302 * 180.02562 * 8 7 6 10 10 O 1.21297 * 119.99956 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00375 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00479 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00013 * 222.30172 * 12 11 9 14 14 C 1.38956 * 119.99736 * 42.29358 * 12 11 9 15 15 N 1.31404 * 120.00098 * 19.57270 * 14 12 11 16 16 Si 1.86797 * 119.99690 * 199.56975 * 14 12 11 17 17 H 1.48502 * 109.47315 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47529 * 120.00344 * 16 14 12 19 19 H 1.48505 * 109.46928 * 240.00029 * 16 14 12 20 20 C 1.46505 * 120.00005 * 359.97438 * 11 9 8 21 21 C 1.52999 * 109.46882 * 114.81332 * 20 11 9 22 22 C 1.53001 * 109.47205 * 234.81366 * 20 11 9 23 23 C 1.38125 * 119.97132 * 180.27527 * 2 1 3 24 24 H 1.09001 * 109.47437 * 269.72394 * 1 2 3 25 25 H 1.09000 * 109.47521 * 29.72956 * 1 2 3 26 26 H 1.09003 * 109.47452 * 149.72533 * 1 2 3 27 27 H 1.08000 * 119.94580 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.97864 * 180.24932 * 4 3 2 29 29 H 1.07995 * 120.03064 * 179.75081 * 5 4 3 30 30 H 1.09003 * 109.47347 * 300.00266 * 8 7 6 31 31 H 1.08998 * 109.47583 * 60.00323 * 8 7 6 32 32 H 0.97002 * 119.99629 * 180.02562 * 15 14 12 33 33 H 1.08997 * 109.46841 * 354.81537 * 20 11 9 34 34 H 1.08997 * 109.47378 * 65.29890 * 21 20 11 35 35 H 1.09001 * 109.46676 * 185.30335 * 21 20 11 36 36 H 1.09000 * 109.47131 * 305.29947 * 21 20 11 37 37 H 1.09002 * 109.46882 * 60.91765 * 22 20 11 38 38 H 1.08998 * 109.46886 * 180.91557 * 22 20 11 39 39 H 1.08996 * 109.47117 * 300.91408 * 22 20 11 40 40 H 1.08001 * 120.02705 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0057 5 6 4.2752 0.0071 -0.0001 6 6 3.5845 -1.1959 -0.0058 7 8 4.2658 -2.3718 -0.0120 8 6 5.6926 -2.2949 -0.0117 9 6 6.2707 -3.6866 -0.0197 10 8 5.5332 -4.6496 -0.0247 11 7 7.6071 -3.8613 -0.0203 12 6 8.1330 -5.1273 -0.0271 13 1 8.9788 -5.3640 0.6014 14 6 7.5776 -6.1060 -0.8423 15 7 6.8297 -5.7614 -1.8663 16 14 7.8944 -7.9114 -0.4826 17 1 8.7621 -8.0325 0.7165 18 1 6.6030 -8.6002 -0.2314 19 1 8.5706 -8.5369 -1.6475 20 6 8.4979 -2.6981 -0.0138 21 6 9.2882 -2.6685 1.2959 22 6 9.4682 -2.7922 -1.1930 23 6 2.1970 -1.1965 -0.0057 24 1 -0.3634 -0.0050 1.0276 25 1 -0.3634 0.8924 -0.5096 26 1 -0.3634 -0.8875 -0.5181 27 1 1.6564 2.1324 -0.0004 28 1 4.1176 2.1381 0.0098 29 1 5.3551 0.0102 0.0003 30 1 6.0278 -1.7576 -0.8989 31 1 6.0279 -1.7670 0.8810 32 1 6.4417 -6.4446 -2.4352 33 1 7.9062 -1.7870 -0.1018 34 1 9.9502 -3.5332 1.3405 35 1 9.8804 -1.7546 1.3422 36 1 8.5969 -2.6964 2.1382 37 1 8.9059 -2.7970 -2.1267 38 1 10.1415 -1.9352 -1.1787 39 1 10.0485 -3.7115 -1.1136 40 1 1.6570 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127472752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:40 Heat of formation + Delta-G solvation = -60.436105 kcal Electronic energy + Delta-G solvation = -21661.285826 eV Core-core repulsion = 18441.046778 eV Total energy + Delta-G solvation = -3220.239048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30705 -40.21202 -38.47100 -36.92511 -34.37608 -33.39355 -31.92292 -31.43300 -29.45593 -27.86673 -27.78111 -26.34756 -23.46430 -22.73893 -22.15388 -20.95196 -19.06252 -18.18984 -17.53365 -17.21322 -16.96950 -16.69146 -16.48024 -15.75316 -15.20810 -15.09845 -14.75580 -14.62087 -14.44705 -14.16790 -13.73045 -13.60438 -13.48112 -13.13752 -12.95326 -12.89599 -12.80426 -12.59146 -12.50436 -12.41377 -12.14151 -11.97040 -11.84376 -11.79193 -11.56670 -10.80285 -10.07600 -9.73520 -9.15101 -9.12945 -8.21467 -5.97030 0.37310 0.50422 1.35306 1.43805 1.51198 1.95776 2.24882 2.43425 2.81305 3.20461 3.27078 3.77956 3.91616 3.99376 4.05828 4.13818 4.20276 4.22601 4.39040 4.45735 4.46603 4.53308 4.56289 4.84289 4.88512 4.92826 5.00162 5.03149 5.10987 5.12874 5.25856 5.40409 5.46074 5.50348 5.54443 5.60195 5.65288 5.90675 6.19486 6.47542 7.00259 7.20410 7.64205 8.29375 8.87678 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.004689 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.640169 B = 5969.778780 C = 6899.615063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 C -0.163 4.163 4 C -0.073 4.073 5 C -0.226 4.226 6 C 0.105 3.895 7 O -0.325 6.325 8 C 0.065 3.935 9 C 0.453 3.547 10 O -0.578 6.578 11 N -0.454 5.454 12 C -0.347 4.347 13 H 0.087 0.913 14 C 0.018 3.982 15 N -0.868 5.868 16 Si 0.964 3.036 17 H -0.253 1.253 18 H -0.300 1.300 19 H -0.274 1.274 20 C 0.111 3.889 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.182 4.182 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.256 0.744 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.028 0.972 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 17.459 3.815 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.090 4.090 5 C -0.245 4.245 6 C 0.060 3.940 7 O -0.238 6.238 8 C -0.013 4.013 9 C 0.240 3.760 10 O -0.459 6.459 11 N -0.177 5.177 12 C -0.474 4.474 13 H 0.105 0.895 14 C -0.188 4.188 15 N -0.504 5.504 16 Si 0.789 3.211 17 H -0.177 1.177 18 H -0.227 1.227 19 H -0.200 1.200 20 C 0.008 3.992 21 C -0.204 4.204 22 C -0.194 4.194 23 C -0.201 4.201 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.173 0.827 28 H 0.176 0.824 29 H 0.156 0.844 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.719 16.713 3.661 17.509 hybrid contribution 0.176 -1.493 -0.249 1.524 sum -3.544 15.219 3.412 15.995 Atomic orbital electron populations 1.20866 0.88662 1.03855 1.03465 1.20060 0.97605 0.91585 0.95915 1.21331 0.94326 0.98122 1.04311 1.21329 0.94604 0.97614 0.95491 1.21504 1.01153 0.92038 1.09812 1.19573 0.92629 0.85094 0.96713 1.86162 1.19822 1.29368 1.88490 1.22494 0.78820 0.96771 1.03237 1.20331 0.83841 0.89599 0.82184 1.90511 1.59627 1.43659 1.52064 1.43553 1.02561 1.05841 1.65767 1.19175 1.17816 0.86760 1.23655 0.89499 1.26032 0.95915 1.03593 0.93243 1.69991 1.31793 1.34763 1.13848 0.85351 0.77186 0.79637 0.78893 1.17656 1.22698 1.19977 1.21482 0.92507 0.88497 0.96754 1.22019 0.99962 1.02721 0.95679 1.21857 0.98792 1.02137 0.96567 1.20504 0.90909 0.99560 1.09144 0.89802 0.89117 0.91688 0.82697 0.82416 0.84359 0.89466 0.87938 0.93454 0.89542 0.93293 0.88966 0.93554 0.95274 0.89329 0.93433 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.01 71.24 0.71 -1.19 16 2 C -0.05 -1.25 5.88 -19.88 -0.12 -1.37 16 3 C -0.16 -3.31 9.70 22.28 0.22 -3.10 16 4 C -0.07 -1.55 10.04 22.26 0.22 -1.33 16 5 C -0.23 -6.33 9.04 22.37 0.20 -6.13 16 6 C 0.11 3.78 6.69 22.51 0.15 3.93 16 7 O -0.33 -14.66 9.67 -73.38 -0.71 -15.37 16 8 C 0.07 2.68 3.54 71.23 0.25 2.93 16 9 C 0.45 24.26 7.05 87.66 0.62 24.88 16 10 O -0.58 -37.57 14.12 15.95 0.23 -37.34 16 11 N -0.45 -22.49 2.45 -613.12 -1.50 -23.99 16 12 C -0.35 -19.00 7.80 84.04 0.66 -18.34 16 13 H 0.09 4.53 7.25 -2.91 -0.02 4.51 16 14 C 0.02 1.06 4.34 84.93 0.37 1.43 16 15 N -0.87 -54.37 11.66 21.66 0.25 -54.12 16 16 Si 0.96 46.56 29.60 68.60 2.03 48.59 16 17 H -0.25 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 C 0.11 4.00 3.14 44.99 0.14 4.14 16 21 C -0.15 -4.36 9.16 71.98 0.66 -3.70 16 22 C -0.14 -4.70 9.10 71.98 0.65 -4.05 16 23 C -0.18 -5.93 9.64 22.37 0.22 -5.72 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 26 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 27 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.14 3.39 6.30 -2.91 -0.02 3.38 16 30 H 0.09 3.23 7.21 -2.39 -0.02 3.21 16 31 H 0.10 3.44 7.41 -2.39 -0.02 3.42 16 32 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.09 2.64 5.79 -2.39 -0.01 2.63 16 34 H 0.05 1.58 7.45 -2.39 -0.02 1.57 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.82 7.52 -2.39 -0.02 1.81 16 40 H 0.11 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -79.59 332.21 6.27 -73.33 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.02 Total: 16.50 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.95 Total: -7.60 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -1.25 Total: -78.11 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.48 Total: -52.71 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -79.59 6.27 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127472752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.889 kcal (2) G-P(sol) polarization free energy of solvation -79.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds