Wall clock time and date at job start Mon Mar 30 2020 07:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86798 * 120.00138 * 2 1 4 4 H 1.48499 * 109.47228 * 84.72393 * 3 2 1 5 5 H 1.48501 * 109.47273 * 204.72295 * 3 2 1 6 6 H 1.48495 * 109.47445 * 324.72281 * 3 2 1 7 7 C 1.39905 * 119.99609 * 180.28402 * 2 1 3 8 8 H 1.07996 * 120.00216 * 19.09804 * 7 2 1 9 9 C 1.41030 * 119.99604 * 199.10046 * 7 2 1 10 10 C 1.40694 * 120.27662 * 26.51280 * 9 7 2 11 11 C 1.37844 * 119.78592 * 179.97438 * 10 9 7 12 12 O 1.35963 * 119.82199 * 180.02562 * 11 10 9 13 13 C 1.42904 * 117.00065 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47091 * 180.02562 * 13 12 11 15 15 H 1.09006 * 109.48171 * 305.02564 * 14 13 12 16 16 C 1.53093 * 109.47919 * 185.00403 * 14 13 12 17 17 C 1.53181 * 109.16449 * 182.40935 * 16 14 13 18 18 C 1.53185 * 109.03465 * 56.97935 * 17 16 14 19 19 C 1.53090 * 109.16006 * 303.02074 * 18 17 16 20 20 O 1.42896 * 109.48014 * 65.06334 * 14 13 12 21 21 C 1.39421 * 120.35812 * 0.02562 * 11 10 9 22 22 C 1.38092 * 120.56596 * 359.97438 * 21 11 10 23 23 C 1.38722 * 120.20719 * 359.73840 * 22 21 11 24 24 N 1.38844 * 120.18411 * 180.25847 * 23 22 21 25 25 H 0.97000 * 119.99906 * 185.09391 * 1 2 3 26 26 H 1.08003 * 120.11313 * 359.97438 * 10 9 7 27 27 H 1.08997 * 109.47252 * 300.00646 * 13 12 11 28 28 H 1.09004 * 109.46284 * 60.00717 * 13 12 11 29 29 H 1.08996 * 109.52201 * 302.31404 * 16 14 13 30 30 H 1.09002 * 109.52493 * 62.43869 * 16 14 13 31 31 H 1.08992 * 109.54390 * 176.84697 * 17 16 14 32 32 H 1.08994 * 109.54129 * 297.11509 * 17 16 14 33 33 H 1.09000 * 109.52202 * 62.92193 * 18 17 16 34 34 H 1.09000 * 109.51959 * 183.11991 * 18 17 16 35 35 H 1.09005 * 109.47945 * 177.59059 * 19 18 17 36 36 H 1.09002 * 109.48407 * 297.62411 * 19 18 17 37 37 H 1.07998 * 119.71631 * 180.02562 * 21 11 10 38 38 H 1.08000 * 119.89495 * 180.02562 * 22 21 11 39 39 H 0.97006 * 120.00367 * 180.25903 * 24 23 22 40 40 H 0.97003 * 120.00614 * 0.25821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3790 2.1108 1.3941 5 1 3.5919 1.4105 -0.5856 6 1 1.5008 2.6179 -0.8085 7 6 2.0084 -1.2116 -0.0060 8 1 1.5130 -2.1196 -0.3165 9 6 3.3605 -1.2472 0.3935 10 6 3.8609 -0.2850 1.2897 11 6 5.1840 -0.3296 1.6738 12 8 5.6682 0.5995 2.5403 13 6 7.0479 0.4963 2.8980 14 6 7.4071 1.6185 3.8738 15 1 7.1425 2.5806 3.4348 16 6 8.9106 1.5843 4.1602 17 6 9.2525 2.6717 5.1834 18 6 8.4149 2.4501 6.4467 19 6 6.9306 2.4509 6.0720 20 8 6.6868 1.4372 5.0946 21 6 6.0284 -1.3225 1.1787 22 6 5.5527 -2.2742 0.2984 23 6 4.2238 -2.2549 -0.0992 24 7 3.7447 -3.2152 -0.9802 25 1 -0.4850 -0.8367 0.0746 26 1 3.2106 0.4862 1.6755 27 1 7.2292 -0.4685 3.3716 28 1 7.6629 0.5826 2.0021 29 1 9.1829 0.6081 4.5614 30 1 9.4615 1.7653 3.2371 31 1 10.3118 2.6165 5.4340 32 1 9.0264 3.6517 4.7633 33 1 8.6771 1.4913 6.8940 34 1 8.6112 3.2515 7.1590 35 1 6.3313 2.2510 6.9603 36 1 6.6597 3.4239 5.6619 37 1 7.0631 -1.3479 1.4869 38 1 6.2162 -3.0386 -0.0781 39 1 2.8159 -3.1970 -1.2594 40 1 4.3388 -3.9044 -1.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127596998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:37 Heat of formation + Delta-G solvation = -81.618241 kcal Electronic energy + Delta-G solvation = -21449.940324 eV Core-core repulsion = 18228.782749 eV Total energy + Delta-G solvation = -3221.157574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62168 -38.65286 -36.86079 -33.71051 -33.59027 -32.86189 -31.83468 -30.19607 -27.79175 -26.27399 -24.68526 -24.16502 -22.34543 -21.49859 -20.37432 -19.85433 -18.18593 -16.65892 -16.55522 -16.23911 -15.80842 -15.73360 -14.84697 -14.66900 -14.38090 -14.12351 -13.87996 -13.38648 -13.25055 -12.82336 -12.78371 -12.35696 -11.97740 -11.86044 -11.63643 -11.34514 -11.24825 -11.13790 -10.87062 -10.72015 -10.63551 -10.31272 -10.17844 -9.62957 -9.44751 -9.39756 -8.99240 -8.71191 -7.64105 -7.22521 -6.21553 -4.31536 2.70626 2.95460 3.37731 3.47979 3.69348 3.75351 3.90867 4.16307 4.62394 4.63212 4.67786 4.73667 4.95961 5.09825 5.14870 5.26358 5.34360 5.45212 5.49881 5.57168 5.60983 5.67677 5.73996 5.78552 5.88387 5.95593 6.02816 6.13782 6.23278 6.69490 6.70877 7.18885 7.27723 7.32335 7.46505 7.55065 7.66073 7.84142 8.19248 8.46357 8.57713 8.70950 8.92352 9.03888 10.10253 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.004715 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.358762 B = 5937.226640 C = 6842.341381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.047 3.953 3 Si 1.071 2.929 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.295 1.295 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.083 3.917 10 C -0.250 4.250 11 C 0.121 3.879 12 O -0.319 6.319 13 C 0.074 3.926 14 C 0.092 3.908 15 H 0.066 0.934 16 C -0.148 4.148 17 C -0.120 4.120 18 C -0.157 4.157 19 C 0.058 3.942 20 O -0.366 6.366 21 C -0.281 4.281 22 C -0.145 4.145 23 C 0.101 3.899 24 N -0.884 5.884 25 H 0.284 0.716 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.392 0.608 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.123 3.894 7.221 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.172 4.172 3 Si 0.898 3.102 4 H -0.203 1.203 5 H -0.187 1.187 6 H -0.223 1.223 7 C -0.543 4.543 8 H 0.094 0.906 9 C 0.078 3.922 10 C -0.271 4.271 11 C 0.076 3.924 12 O -0.234 6.234 13 C -0.002 4.002 14 C 0.034 3.966 15 H 0.084 0.916 16 C -0.186 4.186 17 C -0.158 4.158 18 C -0.195 4.195 19 C -0.019 4.019 20 O -0.285 6.285 21 C -0.302 4.302 22 C -0.170 4.170 23 C 0.000 4.000 24 N -0.426 5.426 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.220 0.780 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 14.588 5.556 7.309 17.237 hybrid contribution 0.405 -2.026 -0.166 2.073 sum 14.992 3.530 7.143 16.978 Atomic orbital electron populations 1.70583 1.08156 1.32488 1.33107 1.27193 0.95540 1.04366 0.90104 0.83578 0.75786 0.73093 0.77768 1.20318 1.18664 1.22273 1.20285 0.95311 0.97032 1.41640 0.90575 1.17149 0.92850 0.90787 0.91418 1.19959 0.93127 1.06518 1.07529 1.18523 0.93086 0.89287 0.91481 1.86024 1.24845 1.51161 1.61381 1.22511 0.83397 0.98079 0.96179 1.22120 0.90488 0.98823 0.85155 0.91560 1.22126 0.95931 1.00367 1.00160 1.21564 0.99946 0.98790 0.95492 1.22219 0.96559 1.02721 0.98013 1.22567 0.95024 0.91858 0.92407 1.88069 1.67239 1.48753 1.24462 1.20118 0.98154 1.01933 1.09962 1.19764 0.93609 1.00757 1.02830 1.17804 0.92157 0.94189 0.95807 1.41860 1.13601 1.33103 1.54029 0.90481 0.87277 0.91983 0.91379 0.90736 0.90536 0.91394 0.91700 0.91063 0.91035 0.88915 0.93238 0.88497 0.88915 0.77965 0.79643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.53 13.66 55.55 0.76 -21.77 16 2 C 0.05 1.27 5.41 -17.33 -0.09 1.18 16 3 Si 1.07 25.96 24.83 -169.99 -4.22 21.74 16 4 H -0.28 -6.62 6.67 56.52 0.38 -6.24 16 5 H -0.26 -6.39 6.82 56.52 0.39 -6.00 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -13.88 8.86 -37.90 -0.34 -14.21 16 8 H 0.08 2.05 6.87 -52.49 -0.36 1.69 16 9 C 0.08 2.19 5.19 -106.65 -0.55 1.63 16 10 C -0.25 -6.56 7.09 -38.80 -0.28 -6.84 16 11 C 0.12 2.91 6.67 -39.28 -0.26 2.64 16 12 O -0.32 -7.03 10.09 -24.40 -0.25 -7.28 16 13 C 0.07 1.24 4.40 37.15 0.16 1.40 16 14 C 0.09 1.29 2.93 -26.69 -0.08 1.22 16 15 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.15 -1.53 5.42 -26.59 -0.14 -1.68 16 17 C -0.12 -1.05 6.03 -26.54 -0.16 -1.21 16 18 C -0.16 -1.41 6.14 -26.59 -0.16 -1.58 16 19 C 0.06 0.66 6.84 37.20 0.25 0.92 16 20 O -0.37 -5.72 10.37 -40.01 -0.41 -6.14 16 21 C -0.28 -6.18 9.03 -39.19 -0.35 -6.54 16 22 C -0.15 -3.19 9.87 -39.46 -0.39 -3.58 16 23 C 0.10 2.40 6.79 -83.25 -0.57 1.83 16 24 N -0.88 -17.64 8.98 32.74 0.29 -17.34 16 25 H 0.28 7.55 8.73 -40.82 -0.36 7.19 16 26 H 0.11 2.92 4.37 -52.48 -0.23 2.69 16 27 H 0.06 1.02 7.65 -51.93 -0.40 0.62 16 28 H 0.07 1.01 7.65 -51.93 -0.40 0.62 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.84 6.26 -52.49 -0.33 1.51 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.39 7.83 7.06 -40.82 -0.29 7.54 16 40 H 0.38 6.24 8.83 -40.82 -0.36 5.88 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -30.39 317.93 -7.78 -38.16 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -5.78 Total: 12.65 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -2.96 Total: -24.81 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 1.05 Total: -39.12 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.66 Total: -13.42 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -4.22 Total: 21.74 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.39 -7.78 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127596998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.454 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds