Wall clock time and date at job start Mon Mar 30 2020 07:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86798 * 120.00138 * 2 1 4 4 H 1.48499 * 109.47228 * 84.72393 * 3 2 1 5 5 H 1.48501 * 109.47273 * 204.72295 * 3 2 1 6 6 H 1.48495 * 109.47445 * 324.72281 * 3 2 1 7 7 C 1.39905 * 119.99609 * 180.28402 * 2 1 3 8 8 H 1.07996 * 120.00216 * 19.09804 * 7 2 1 9 9 C 1.41030 * 119.99604 * 199.10046 * 7 2 1 10 10 C 1.40694 * 120.27662 * 26.51280 * 9 7 2 11 11 C 1.37844 * 119.78592 * 179.97438 * 10 9 7 12 12 O 1.35963 * 119.82199 * 180.02562 * 11 10 9 13 13 C 1.42904 * 117.00065 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47091 * 180.02562 * 13 12 11 15 15 H 1.09006 * 109.48171 * 305.02564 * 14 13 12 16 16 C 1.53093 * 109.47919 * 185.00403 * 14 13 12 17 17 C 1.53181 * 109.16449 * 182.40935 * 16 14 13 18 18 C 1.53185 * 109.03465 * 56.97935 * 17 16 14 19 19 C 1.53090 * 109.16006 * 303.02074 * 18 17 16 20 20 O 1.42896 * 109.48014 * 65.06334 * 14 13 12 21 21 C 1.39421 * 120.35812 * 0.02562 * 11 10 9 22 22 C 1.38092 * 120.56596 * 359.97438 * 21 11 10 23 23 C 1.38722 * 120.20719 * 359.73840 * 22 21 11 24 24 N 1.38844 * 120.18411 * 180.25847 * 23 22 21 25 25 H 0.97000 * 119.99906 * 185.09391 * 1 2 3 26 26 H 1.08003 * 120.11313 * 359.97438 * 10 9 7 27 27 H 1.08997 * 109.47252 * 300.00646 * 13 12 11 28 28 H 1.09004 * 109.46284 * 60.00717 * 13 12 11 29 29 H 1.08996 * 109.52201 * 302.31404 * 16 14 13 30 30 H 1.09002 * 109.52493 * 62.43869 * 16 14 13 31 31 H 1.08992 * 109.54390 * 176.84697 * 17 16 14 32 32 H 1.08994 * 109.54129 * 297.11509 * 17 16 14 33 33 H 1.09000 * 109.52202 * 62.92193 * 18 17 16 34 34 H 1.09000 * 109.51959 * 183.11991 * 18 17 16 35 35 H 1.09005 * 109.47945 * 177.59059 * 19 18 17 36 36 H 1.09002 * 109.48407 * 297.62411 * 19 18 17 37 37 H 1.07998 * 119.71631 * 180.02562 * 21 11 10 38 38 H 1.08000 * 119.89495 * 180.02562 * 22 21 11 39 39 H 0.97006 * 120.00367 * 180.25903 * 24 23 22 40 40 H 0.97003 * 120.00614 * 0.25821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3790 2.1108 1.3941 5 1 3.5919 1.4105 -0.5856 6 1 1.5008 2.6179 -0.8085 7 6 2.0084 -1.2116 -0.0060 8 1 1.5130 -2.1196 -0.3165 9 6 3.3605 -1.2472 0.3935 10 6 3.8609 -0.2850 1.2897 11 6 5.1840 -0.3296 1.6738 12 8 5.6682 0.5995 2.5403 13 6 7.0479 0.4963 2.8980 14 6 7.4071 1.6185 3.8738 15 1 7.1425 2.5806 3.4348 16 6 8.9106 1.5843 4.1602 17 6 9.2525 2.6717 5.1834 18 6 8.4149 2.4501 6.4467 19 6 6.9306 2.4509 6.0720 20 8 6.6868 1.4372 5.0946 21 6 6.0284 -1.3225 1.1787 22 6 5.5527 -2.2742 0.2984 23 6 4.2238 -2.2549 -0.0992 24 7 3.7447 -3.2152 -0.9802 25 1 -0.4850 -0.8367 0.0746 26 1 3.2106 0.4862 1.6755 27 1 7.2292 -0.4685 3.3716 28 1 7.6629 0.5826 2.0021 29 1 9.1829 0.6081 4.5614 30 1 9.4615 1.7653 3.2371 31 1 10.3118 2.6165 5.4340 32 1 9.0264 3.6517 4.7633 33 1 8.6771 1.4913 6.8940 34 1 8.6112 3.2515 7.1590 35 1 6.3313 2.2510 6.9603 36 1 6.6597 3.4239 5.6619 37 1 7.0631 -1.3479 1.4869 38 1 6.2162 -3.0386 -0.0781 39 1 2.8159 -3.1970 -1.2594 40 1 4.3388 -3.9044 -1.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127596998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:37 Heat of formation + Delta-G solvation = -101.929168 kcal Electronic energy + Delta-G solvation = -21450.821071 eV Core-core repulsion = 18228.782749 eV Total energy + Delta-G solvation = -3222.038322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.89661 -40.10769 -38.54349 -35.55576 -34.56753 -34.45080 -32.99396 -32.09630 -29.23892 -27.66543 -26.54199 -25.07728 -23.75747 -23.06477 -21.69301 -21.15039 -20.09468 -18.35739 -17.83500 -17.64006 -17.50570 -16.88083 -16.14862 -15.83363 -15.75339 -15.43397 -15.30512 -15.17808 -14.77173 -14.35948 -13.88709 -13.68729 -13.59587 -13.27077 -13.14725 -12.85554 -12.73588 -12.33082 -12.20723 -12.03860 -11.91747 -11.64394 -11.55462 -11.34561 -11.21045 -10.94617 -10.40619 -10.40329 -9.57492 -9.27225 -8.01585 -6.31372 0.80501 1.08392 1.40504 1.53788 1.75721 2.20650 2.48111 2.66228 2.78436 3.51988 3.55836 3.79511 3.91454 3.95266 4.04871 4.12145 4.21044 4.30756 4.40019 4.45149 4.51898 4.63718 4.68792 4.82983 4.86205 4.91027 4.95283 5.06388 5.11277 5.17018 5.25905 5.38452 5.48643 5.61376 5.66270 5.75669 5.99222 6.21540 6.30807 6.55698 6.74013 6.85917 7.13493 7.44874 8.05998 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.004715 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.358762 B = 5937.226640 C = 6842.341381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.017 3.983 3 Si 1.102 2.898 4 H -0.280 1.280 5 H -0.266 1.266 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.054 3.946 10 C -0.268 4.268 11 C 0.104 3.896 12 O -0.341 6.341 13 C 0.065 3.935 14 C 0.090 3.910 15 H 0.061 0.939 16 C -0.141 4.141 17 C -0.120 4.120 18 C -0.152 4.152 19 C 0.049 3.951 20 O -0.403 6.403 21 C -0.261 4.261 22 C -0.145 4.145 23 C 0.094 3.906 24 N -0.873 5.873 25 H 0.279 0.721 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.391 0.609 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.783 3.851 7.630 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.197 4.197 3 Si 0.926 3.074 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.049 3.951 10 C -0.289 4.289 11 C 0.059 3.941 12 O -0.256 6.256 13 C -0.011 4.011 14 C 0.033 3.967 15 H 0.079 0.921 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.189 4.189 19 C -0.028 4.028 20 O -0.323 6.323 21 C -0.281 4.281 22 C -0.169 4.169 23 C -0.008 4.008 24 N -0.416 5.416 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.219 0.781 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 18.268 5.494 7.708 20.575 hybrid contribution -0.506 -2.099 -0.188 2.168 sum 17.762 3.395 7.520 19.585 Atomic orbital electron populations 1.70623 1.08504 1.32154 1.36058 1.27883 0.95748 1.06200 0.89836 0.83148 0.74967 0.71687 0.77585 1.20737 1.19111 1.20829 1.20274 0.96187 0.96725 1.43355 0.91755 1.17318 0.93057 0.92325 0.92398 1.20068 0.94381 1.06386 1.08047 1.18630 0.92819 0.90439 0.92234 1.86007 1.28014 1.50767 1.60827 1.22928 0.80938 0.99439 0.97747 1.22207 0.92803 0.97383 0.84332 0.92133 1.22107 0.92970 1.01191 1.01608 1.21606 1.01067 0.98323 0.94715 1.22183 0.94558 1.03471 0.98731 1.22804 0.97202 0.91009 0.91746 1.88005 1.68404 1.50400 1.25523 1.20604 0.99519 1.00078 1.07868 1.20219 0.93319 1.01315 1.02052 1.18019 0.92732 0.94019 0.96059 1.41784 1.13963 1.32765 1.53075 0.91027 0.88999 0.91787 0.89253 0.90615 0.88775 0.89240 0.91271 0.91283 0.88864 0.88436 0.93062 0.84862 0.85036 0.78090 0.77395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.39 13.66 21.82 0.30 -48.09 16 2 C 0.02 0.96 5.41 85.24 0.46 1.42 16 3 Si 1.10 54.16 24.83 68.60 1.70 55.86 16 4 H -0.28 -13.75 6.67 99.48 0.66 -13.08 16 5 H -0.27 -13.08 6.82 99.48 0.68 -12.40 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.54 -29.85 8.86 23.36 0.21 -29.64 16 8 H 0.06 3.61 6.87 -2.91 -0.02 3.59 16 9 C 0.05 2.87 5.19 -21.18 -0.11 2.76 16 10 C -0.27 -14.18 7.09 22.78 0.16 -14.02 16 11 C 0.10 4.89 6.67 22.46 0.15 5.04 16 12 O -0.34 -14.76 10.09 -88.57 -0.89 -15.65 16 13 C 0.06 2.01 4.40 71.98 0.32 2.32 16 14 C 0.09 2.39 2.93 30.62 0.09 2.48 16 15 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 16 C -0.14 -2.49 5.42 30.69 0.17 -2.32 16 17 C -0.12 -1.69 6.03 30.72 0.19 -1.50 16 18 C -0.15 -2.33 6.14 30.69 0.19 -2.14 16 19 C 0.05 1.05 6.84 72.01 0.49 1.54 16 20 O -0.40 -12.30 10.37 -144.41 -1.50 -13.79 16 21 C -0.26 -10.60 9.03 22.52 0.20 -10.40 16 22 C -0.14 -5.85 9.87 22.35 0.22 -5.63 16 23 C 0.09 4.31 6.79 38.96 0.26 4.57 16 24 N -0.87 -33.42 8.98 -50.34 -0.45 -33.87 16 25 H 0.28 15.56 8.73 -92.71 -0.81 14.75 16 26 H 0.09 5.09 4.37 -2.91 -0.01 5.07 16 27 H 0.06 1.95 7.65 -2.39 -0.02 1.93 16 28 H 0.09 2.36 7.65 -2.39 -0.02 2.34 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.13 4.41 6.26 -2.91 -0.02 4.39 16 38 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.39 15.47 7.06 -92.70 -0.65 14.81 16 40 H 0.40 12.01 8.83 -92.71 -0.82 11.19 16 Total: -1.00 -67.01 317.93 1.63 -65.38 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.52 Total: 35.69 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 3.00 Total: -45.52 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -0.15 Total: -81.96 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -2.39 Total: -29.45 kcal Atomic # 14 Polarization: 54.16 SS G_CDS: 1.70 Total: 55.86 kcal Total: -67.01 1.63 -65.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127596998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.549 kcal (2) G-P(sol) polarization free energy of solvation -67.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds