Wall clock time and date at job start Mon Mar 30 2020 07:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86793 * 120.00156 * 2 1 4 4 H 1.48503 * 109.47347 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47347 * 299.99853 * 3 2 1 6 6 H 1.48509 * 109.47171 * 59.99713 * 3 2 1 7 7 C 1.39903 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99514 * 164.09590 * 7 2 1 9 9 C 1.41023 * 120.00694 * 343.81787 * 7 2 1 10 10 C 1.40707 * 120.27273 * 333.60346 * 9 7 2 11 11 C 1.37838 * 119.78507 * 179.74101 * 10 9 7 12 12 O 1.35958 * 119.82537 * 180.23078 * 11 10 9 13 13 C 1.42898 * 117.00463 * 180.29849 * 12 11 10 14 14 C 1.53003 * 109.47293 * 179.97438 * 13 12 11 15 15 H 1.09005 * 109.47934 * 55.00438 * 14 13 12 16 16 C 1.53088 * 109.48017 * 175.02381 * 14 13 12 17 17 C 1.53181 * 109.16142 * 177.58410 * 16 14 13 18 18 C 1.53174 * 109.04269 * 303.03497 * 17 16 14 19 19 C 1.53095 * 109.16562 * 56.97846 * 18 17 16 20 20 O 1.42897 * 109.48268 * 294.98107 * 14 13 12 21 21 C 1.39423 * 120.35720 * 0.52957 * 11 10 9 22 22 C 1.38093 * 120.57023 * 359.72023 * 21 11 10 23 23 C 1.38724 * 120.20076 * 0.02562 * 22 21 11 24 24 N 1.38853 * 120.17669 * 179.97438 * 23 22 21 25 25 H 0.96999 * 119.99914 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.10639 * 359.97221 * 10 9 7 27 27 H 1.08998 * 109.47376 * 299.99920 * 13 12 11 28 28 H 1.09006 * 109.46616 * 60.00053 * 13 12 11 29 29 H 1.09004 * 109.52516 * 297.49985 * 16 14 13 30 30 H 1.09000 * 109.52555 * 57.68839 * 16 14 13 31 31 H 1.08998 * 109.54276 * 183.16506 * 17 16 14 32 32 H 1.08994 * 109.60782 * 62.94688 * 17 16 14 33 33 H 1.08999 * 109.52652 * 297.06383 * 18 17 16 34 34 H 1.09006 * 109.51929 * 176.88219 * 18 17 16 35 35 H 1.08994 * 109.48156 * 182.40955 * 19 18 17 36 36 H 1.08996 * 109.48716 * 62.37515 * 19 18 17 37 37 H 1.07997 * 119.71632 * 179.69894 * 21 11 10 38 38 H 1.08001 * 119.90060 * 180.02562 * 22 21 11 39 39 H 0.97005 * 119.99343 * 179.97438 * 24 23 22 40 40 H 0.96998 * 120.00299 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0084 -1.2116 0.0005 8 1 3.0574 -1.2296 -0.2558 9 6 1.3452 -2.4086 0.3414 10 6 0.2181 -2.3802 1.1831 11 6 -0.4256 -3.5556 1.5055 12 8 -1.5177 -3.5285 2.3150 13 6 -2.1340 -4.7823 2.6153 14 6 -3.3369 -4.5527 3.5324 15 1 -4.0147 -3.8350 3.0701 16 6 -4.0704 -5.8780 3.7540 17 6 -5.2369 -5.6516 4.7206 18 6 -4.6965 -5.0607 6.0263 19 6 -3.9390 -3.7668 5.7168 20 8 -2.8875 -4.0423 4.7892 21 6 0.0408 -4.7729 1.0110 22 6 1.1487 -4.8185 0.1880 23 6 1.8113 -3.6492 -0.1556 24 7 2.9256 -3.6957 -0.9828 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1438 -1.4399 1.5724 27 1 -2.4664 -5.2545 1.6908 28 1 -1.4143 -5.4302 3.1158 29 1 -4.4523 -6.2466 2.8019 30 1 -3.3821 -6.6087 4.1788 31 1 -5.7293 -6.6020 4.9268 32 1 -5.9517 -4.9596 4.2755 33 1 -4.0208 -5.7747 6.4972 34 1 -5.5264 -4.8448 6.6994 35 1 -3.5157 -3.3643 6.6371 36 1 -4.6247 -3.0388 5.2833 37 1 -0.4686 -5.6881 1.2742 38 1 1.5004 -5.7674 -0.1892 39 1 3.3867 -2.8763 -1.2217 40 1 3.2429 -4.5473 -1.3217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127597228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:40 Heat of formation + Delta-G solvation = -77.900515 kcal Electronic energy + Delta-G solvation = -21301.311327 eV Core-core repulsion = 18080.314966 eV Total energy + Delta-G solvation = -3220.996361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.49557 -38.39386 -36.61794 -33.63318 -33.51312 -32.63702 -31.67087 -29.51704 -27.64785 -26.14321 -24.97905 -24.11142 -22.32029 -20.99168 -20.27919 -19.92258 -17.56418 -16.45941 -16.30527 -15.76481 -15.73945 -15.38884 -14.78632 -14.62658 -14.55051 -14.18049 -13.95503 -13.14887 -12.90845 -12.70491 -12.43591 -12.11647 -11.85183 -11.63269 -11.36514 -11.28965 -11.25139 -11.11998 -10.97804 -10.69893 -10.53680 -10.33125 -10.23958 -9.88958 -9.39804 -9.29465 -9.07751 -8.52457 -7.33422 -6.65356 -5.92695 -4.12095 2.85120 3.14660 3.18693 3.23904 3.32808 3.85129 4.02313 4.09789 4.69540 4.74683 4.75653 4.81427 5.06373 5.18445 5.31983 5.38455 5.43316 5.54767 5.66418 5.69425 5.73832 5.81341 5.82238 5.87406 5.98727 6.04377 6.20866 6.26696 6.45287 6.96198 7.07453 7.27017 7.36609 7.57821 7.63335 7.73642 8.03805 8.13594 8.39851 8.77168 8.89109 8.94674 9.17517 9.23799 10.34671 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.004248 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.997915 B = 6590.359145 C = 7655.541120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.463 4.463 8 H 0.075 0.925 9 C 0.093 3.907 10 C -0.167 4.167 11 C 0.094 3.906 12 O -0.318 6.318 13 C 0.076 3.924 14 C 0.093 3.907 15 H 0.066 0.934 16 C -0.148 4.148 17 C -0.120 4.120 18 C -0.157 4.157 19 C 0.059 3.941 20 O -0.366 6.366 21 C -0.275 4.275 22 C -0.155 4.155 23 C 0.095 3.905 24 N -0.886 5.886 25 H 0.278 0.722 26 H 0.125 0.875 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.390 0.610 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -7.653 6.717 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.088 3.912 10 C -0.189 4.189 11 C 0.050 3.950 12 O -0.233 6.233 13 C 0.000 4.000 14 C 0.035 3.965 15 H 0.084 0.916 16 C -0.186 4.186 17 C -0.158 4.158 18 C -0.195 4.195 19 C -0.018 4.018 20 O -0.285 6.285 21 C -0.296 4.296 22 C -0.179 4.179 23 C -0.005 4.005 24 N -0.429 5.429 25 H 0.089 0.911 26 H 0.143 0.857 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.219 0.781 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.869 -7.270 6.888 12.736 hybrid contribution 0.270 0.361 -0.375 0.586 sum -7.598 -6.909 6.513 12.161 Atomic orbital electron populations 1.69872 1.07355 1.28735 1.36007 1.25802 0.94694 1.00913 0.92725 0.86335 0.80803 0.81523 0.78411 1.18638 1.20234 1.19837 1.19159 0.96951 0.90977 1.42265 0.90719 1.16969 0.92493 0.90537 0.91174 1.20304 0.99935 0.95199 1.03430 1.18746 0.87850 0.94599 0.93835 1.86031 1.42421 1.29393 1.65476 1.22437 0.93621 0.87325 0.96634 1.22115 0.95292 0.94394 0.84668 0.91630 1.22128 0.97984 0.98014 1.00469 1.21562 0.97448 1.01237 0.95544 1.22218 1.00523 0.98893 0.97861 1.22551 0.90434 0.95374 0.93485 1.88069 1.31784 1.84504 1.24125 1.20145 1.03555 0.94845 1.11011 1.19699 0.98962 0.94870 1.04385 1.17905 0.91810 0.93889 0.96932 1.41827 1.33496 1.09321 1.58213 0.91146 0.85690 0.91703 0.92350 0.90577 0.90782 0.91472 0.91729 0.91095 0.91111 0.89005 0.93292 0.89058 0.89402 0.78129 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.34 10.99 55.55 0.61 -20.73 16 2 C 0.08 1.94 5.16 -17.33 -0.09 1.85 16 3 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.46 -12.29 8.48 -37.90 -0.32 -12.61 16 8 H 0.07 1.86 6.71 -52.48 -0.35 1.51 16 9 C 0.09 2.53 5.57 -106.65 -0.59 1.94 16 10 C -0.17 -4.65 8.59 -38.80 -0.33 -4.98 16 11 C 0.09 2.40 6.67 -39.29 -0.26 2.13 16 12 O -0.32 -7.47 10.09 -24.42 -0.25 -7.71 16 13 C 0.08 1.37 4.40 37.16 0.16 1.53 16 14 C 0.09 1.41 2.92 -26.68 -0.08 1.33 16 15 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.15 -1.67 5.42 -26.59 -0.14 -1.81 16 17 C -0.12 -1.14 6.03 -26.55 -0.16 -1.30 16 18 C -0.16 -1.51 6.14 -26.59 -0.16 -1.67 16 19 C 0.06 0.71 6.84 37.21 0.25 0.96 16 20 O -0.37 -6.02 10.37 -40.04 -0.42 -6.44 16 21 C -0.27 -6.44 9.03 -39.19 -0.35 -6.80 16 22 C -0.16 -3.60 9.87 -39.45 -0.39 -3.99 16 23 C 0.10 2.34 6.79 -83.24 -0.57 1.77 16 24 N -0.89 -18.08 8.98 32.74 0.29 -17.78 16 25 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 26 H 0.13 3.67 6.24 -52.48 -0.33 3.34 16 27 H 0.06 1.07 7.65 -51.93 -0.40 0.67 16 28 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.88 6.26 -52.49 -0.33 1.55 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.39 7.77 7.06 -40.82 -0.29 7.48 16 40 H 0.38 6.42 8.83 -40.82 -0.36 6.06 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -30.53 323.27 -8.76 -39.29 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -5.81 Total: 16.09 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -3.04 Total: -21.65 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.90 Total: -38.51 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.66 Total: -14.15 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.53 -8.76 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127597228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.610 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds