Wall clock time and date at job start Mon Mar 30 2020 07:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86793 * 120.00156 * 2 1 4 4 H 1.48503 * 109.47347 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47347 * 299.99853 * 3 2 1 6 6 H 1.48509 * 109.47171 * 59.99713 * 3 2 1 7 7 C 1.39903 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99514 * 164.09590 * 7 2 1 9 9 C 1.41023 * 120.00694 * 343.81787 * 7 2 1 10 10 C 1.40707 * 120.27273 * 333.60346 * 9 7 2 11 11 C 1.37838 * 119.78507 * 179.74101 * 10 9 7 12 12 O 1.35958 * 119.82537 * 180.23078 * 11 10 9 13 13 C 1.42898 * 117.00463 * 180.29849 * 12 11 10 14 14 C 1.53003 * 109.47293 * 179.97438 * 13 12 11 15 15 H 1.09005 * 109.47934 * 55.00438 * 14 13 12 16 16 C 1.53088 * 109.48017 * 175.02381 * 14 13 12 17 17 C 1.53181 * 109.16142 * 177.58410 * 16 14 13 18 18 C 1.53174 * 109.04269 * 303.03497 * 17 16 14 19 19 C 1.53095 * 109.16562 * 56.97846 * 18 17 16 20 20 O 1.42897 * 109.48268 * 294.98107 * 14 13 12 21 21 C 1.39423 * 120.35720 * 0.52957 * 11 10 9 22 22 C 1.38093 * 120.57023 * 359.72023 * 21 11 10 23 23 C 1.38724 * 120.20076 * 0.02562 * 22 21 11 24 24 N 1.38853 * 120.17669 * 179.97438 * 23 22 21 25 25 H 0.96999 * 119.99914 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.10639 * 359.97221 * 10 9 7 27 27 H 1.08998 * 109.47376 * 299.99920 * 13 12 11 28 28 H 1.09006 * 109.46616 * 60.00053 * 13 12 11 29 29 H 1.09004 * 109.52516 * 297.49985 * 16 14 13 30 30 H 1.09000 * 109.52555 * 57.68839 * 16 14 13 31 31 H 1.08998 * 109.54276 * 183.16506 * 17 16 14 32 32 H 1.08994 * 109.60782 * 62.94688 * 17 16 14 33 33 H 1.08999 * 109.52652 * 297.06383 * 18 17 16 34 34 H 1.09006 * 109.51929 * 176.88219 * 18 17 16 35 35 H 1.08994 * 109.48156 * 182.40955 * 19 18 17 36 36 H 1.08996 * 109.48716 * 62.37515 * 19 18 17 37 37 H 1.07997 * 119.71632 * 179.69894 * 21 11 10 38 38 H 1.08001 * 119.90060 * 180.02562 * 22 21 11 39 39 H 0.97005 * 119.99343 * 179.97438 * 24 23 22 40 40 H 0.96998 * 120.00299 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0084 -1.2116 0.0005 8 1 3.0574 -1.2296 -0.2558 9 6 1.3452 -2.4086 0.3414 10 6 0.2181 -2.3802 1.1831 11 6 -0.4256 -3.5556 1.5055 12 8 -1.5177 -3.5285 2.3150 13 6 -2.1340 -4.7823 2.6153 14 6 -3.3369 -4.5527 3.5324 15 1 -4.0147 -3.8350 3.0701 16 6 -4.0704 -5.8780 3.7540 17 6 -5.2369 -5.6516 4.7206 18 6 -4.6965 -5.0607 6.0263 19 6 -3.9390 -3.7668 5.7168 20 8 -2.8875 -4.0423 4.7892 21 6 0.0408 -4.7729 1.0110 22 6 1.1487 -4.8185 0.1880 23 6 1.8113 -3.6492 -0.1556 24 7 2.9256 -3.6957 -0.9828 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1438 -1.4399 1.5724 27 1 -2.4664 -5.2545 1.6908 28 1 -1.4143 -5.4302 3.1158 29 1 -4.4523 -6.2466 2.8019 30 1 -3.3821 -6.6087 4.1788 31 1 -5.7293 -6.6020 4.9268 32 1 -5.9517 -4.9596 4.2755 33 1 -4.0208 -5.7747 6.4972 34 1 -5.5264 -4.8448 6.6994 35 1 -3.5157 -3.3643 6.6371 36 1 -4.6247 -3.0388 5.2833 37 1 -0.4686 -5.6881 1.2742 38 1 1.5004 -5.7674 -0.1892 39 1 3.3867 -2.8763 -1.2217 40 1 3.2429 -4.5473 -1.3217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127597228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:39 Heat of formation + Delta-G solvation = -97.301858 kcal Electronic energy + Delta-G solvation = -21302.152633 eV Core-core repulsion = 18080.314966 eV Total energy + Delta-G solvation = -3221.837667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78749 -39.99195 -38.38148 -35.43098 -34.57389 -34.25468 -32.95402 -31.45175 -29.17584 -27.62415 -26.89079 -25.09414 -23.68855 -22.71003 -21.79668 -21.16656 -19.40543 -18.02072 -17.65326 -17.51572 -17.18768 -16.93458 -16.40302 -16.05362 -15.68160 -15.41019 -15.20142 -14.74364 -14.40619 -14.20732 -13.70250 -13.58058 -13.47314 -13.19517 -13.08033 -12.87101 -12.72178 -12.31480 -12.18938 -12.10638 -11.92601 -11.86963 -11.58792 -11.26395 -11.16143 -10.98871 -10.40898 -10.28764 -9.31598 -8.57591 -7.78699 -6.10277 0.99710 1.34642 1.40436 1.53444 1.55353 2.24704 2.59793 2.78465 2.83633 3.66260 3.80129 3.80688 3.90590 3.95785 4.04903 4.11782 4.26140 4.38404 4.45124 4.48122 4.61008 4.65921 4.69906 4.85485 4.91453 5.05392 5.09028 5.12949 5.14526 5.16254 5.32585 5.37580 5.63286 5.76483 5.90001 6.04179 6.22134 6.30644 6.45113 6.88986 6.98029 7.06575 7.33261 7.58552 8.45326 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.004248 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.997915 B = 6590.359145 C = 7655.541120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.030 3.970 3 Si 0.980 3.020 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.061 3.939 10 C -0.201 4.201 11 C 0.081 3.919 12 O -0.343 6.343 13 C 0.068 3.932 14 C 0.094 3.906 15 H 0.056 0.944 16 C -0.141 4.141 17 C -0.119 4.119 18 C -0.151 4.151 19 C 0.048 3.952 20 O -0.403 6.403 21 C -0.269 4.269 22 C -0.159 4.159 23 C 0.088 3.912 24 N -0.873 5.873 25 H 0.282 0.718 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.393 0.607 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -9.192 6.793 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.520 4.520 8 H 0.102 0.898 9 C 0.056 3.944 10 C -0.223 4.223 11 C 0.036 3.964 12 O -0.259 6.259 13 C -0.007 4.007 14 C 0.036 3.964 15 H 0.074 0.926 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.189 4.189 19 C -0.028 4.028 20 O -0.323 6.323 21 C -0.289 4.289 22 C -0.183 4.183 23 C -0.014 4.014 24 N -0.417 5.417 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.222 0.778 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.028 -8.845 6.952 13.821 hybrid contribution 0.272 0.741 -0.355 0.865 sum -7.756 -8.104 6.598 13.014 Atomic orbital electron populations 1.69975 1.09121 1.29840 1.37075 1.26724 0.95386 1.04470 0.91783 0.85189 0.79631 0.76585 0.78428 1.17575 1.19281 1.19878 1.19469 0.97468 0.91734 1.43311 0.89822 1.17321 0.92986 0.92203 0.91879 1.20242 1.01676 0.95011 1.05332 1.18862 0.88474 0.94747 0.94327 1.86001 1.42005 1.32781 1.65070 1.22816 0.94404 0.85457 0.98055 1.22159 0.93895 0.96445 0.83902 0.92552 1.22107 0.98310 0.95476 1.01980 1.21604 0.96722 1.02556 0.94785 1.22181 1.00899 0.97260 0.98522 1.22814 0.89990 0.97110 0.92893 1.88003 1.34199 1.85074 1.25024 1.20500 1.03425 0.95116 1.09899 1.20108 0.98492 0.95908 1.03799 1.18068 0.92759 0.93463 0.97114 1.41704 1.32204 1.10566 1.57183 0.90790 0.88800 0.90139 0.92238 0.88999 0.90568 0.89097 0.91354 0.91185 0.88699 0.88282 0.93217 0.86013 0.85864 0.77847 0.77746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.78 10.99 21.82 0.24 -46.54 16 2 C 0.03 1.56 5.16 85.24 0.44 2.00 16 3 Si 0.98 39.86 29.59 68.60 2.03 41.89 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.49 -26.59 8.48 23.36 0.20 -26.39 16 8 H 0.08 4.21 6.71 -2.91 -0.02 4.19 16 9 C 0.06 3.40 5.57 -21.18 -0.12 3.29 16 10 C -0.20 -11.72 8.59 22.78 0.20 -11.53 16 11 C 0.08 4.23 6.67 22.46 0.15 4.38 16 12 O -0.34 -16.66 10.09 -88.48 -0.89 -17.55 16 13 C 0.07 2.43 4.40 71.98 0.32 2.75 16 14 C 0.09 2.81 2.92 30.62 0.09 2.90 16 15 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 16 C -0.14 -2.89 5.42 30.68 0.17 -2.73 16 17 C -0.12 -1.93 6.03 30.71 0.19 -1.75 16 18 C -0.15 -2.57 6.14 30.68 0.19 -2.38 16 19 C 0.05 1.13 6.84 72.01 0.49 1.63 16 20 O -0.40 -13.42 10.37 -144.38 -1.50 -14.91 16 21 C -0.27 -12.37 9.03 22.52 0.20 -12.16 16 22 C -0.16 -7.12 9.87 22.35 0.22 -6.90 16 23 C 0.09 4.28 6.79 38.96 0.26 4.54 16 24 N -0.87 -34.37 8.98 -50.34 -0.45 -34.82 16 25 H 0.28 14.47 8.30 -92.71 -0.77 13.70 16 26 H 0.09 5.93 6.24 -2.91 -0.02 5.91 16 27 H 0.08 2.57 7.65 -2.39 -0.02 2.55 16 28 H 0.06 2.08 7.65 -2.38 -0.02 2.07 16 29 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.17 8.14 -2.38 -0.02 1.16 16 35 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 4.74 6.26 -2.91 -0.02 4.72 16 38 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 39 H 0.39 15.24 7.06 -92.70 -0.65 14.59 16 40 H 0.39 12.52 8.83 -92.71 -0.82 11.70 16 Total: -1.00 -68.88 323.27 2.01 -66.87 By element: Atomic # 1 Polarization: 47.85 SS G_CDS: -0.41 Total: 47.43 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 2.99 Total: -42.36 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -0.21 Total: -81.36 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -2.39 Total: -32.47 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -68.88 2.01 -66.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127597228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.432 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds