Wall clock time and date at job start Mon Mar 30 2020 08:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47508 * 2 1 4 4 H 1.09001 * 109.46767 * 55.00052 * 3 2 1 5 5 C 1.50699 * 109.46946 * 175.00104 * 3 2 1 6 6 H 1.07998 * 119.99952 * 120.00577 * 5 3 2 7 7 C 1.37884 * 120.00012 * 299.99501 * 5 3 2 8 8 N 1.31514 * 119.99559 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 119.99911 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47270 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47277 * 120.00516 * 9 7 5 12 12 H 1.48510 * 109.47047 * 240.00364 * 9 7 5 13 13 N 1.46503 * 109.47112 * 295.00175 * 3 2 1 14 14 C 1.34770 * 119.99898 * 84.99530 * 13 3 2 15 15 O 1.21277 * 120.00267 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99646 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47268 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47268 * 179.97438 * 17 16 14 19 19 C 1.38158 * 120.02768 * 265.00026 * 18 17 16 20 20 C 1.38250 * 120.05410 * 180.02562 * 19 18 17 21 21 C 1.38281 * 120.11168 * 359.97438 * 20 19 18 22 22 C 1.38125 * 120.05855 * 359.97438 * 21 20 19 23 23 C 1.38711 * 120.02445 * 84.96087 * 18 17 16 24 24 O 1.35901 * 120.05828 * 0.03985 * 23 18 17 25 25 H 1.09007 * 109.46587 * 60.00021 * 1 2 3 26 26 H 1.09000 * 109.47297 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46993 * 300.00061 * 1 2 3 28 28 H 1.09005 * 109.47377 * 239.99967 * 2 1 3 29 29 H 1.09000 * 109.47026 * 120.00445 * 2 1 3 30 30 H 0.97002 * 119.99379 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99301 * 264.99876 * 13 3 2 32 32 H 1.08999 * 109.47378 * 60.00643 * 16 14 13 33 33 H 1.08996 * 109.47332 * 300.00209 * 16 14 13 34 34 H 1.08999 * 109.46560 * 59.99941 * 17 16 14 35 35 H 1.08996 * 109.46951 * 300.00242 * 17 16 14 36 36 H 1.08004 * 119.97750 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.94133 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.97275 * 180.02562 * 21 20 19 39 39 H 1.07994 * 120.03307 * 179.73079 * 22 21 20 40 40 H 0.96701 * 113.99785 * 269.95941 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1434 0.8782 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8809 1.3818 10 1 6.5987 1.5469 0.1947 11 1 6.3991 1.6164 2.6103 12 1 6.4970 -0.5179 1.4630 13 7 1.6525 2.0975 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3391 2.6327 -0.4341 16 6 0.0369 3.3387 -2.6544 17 6 -1.3820 3.8955 -2.5208 18 6 -1.7801 4.5703 -3.8081 19 6 -1.6133 5.9340 -3.9542 20 6 -1.9789 6.5537 -5.1347 21 6 -2.5117 5.8108 -6.1721 22 6 -2.6796 4.4470 -6.0315 23 6 -2.3137 3.8226 -4.8475 24 8 -2.4788 2.4811 -4.7062 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0619 2.9495 31 1 2.2721 2.1231 -1.9978 32 1 0.0682 2.6146 -3.4686 33 1 0.7283 4.1541 -2.8666 34 1 -1.4128 4.6196 -1.7067 35 1 -2.0736 3.0803 -2.3084 36 1 -1.1977 6.5165 -3.1452 37 1 -1.8480 7.6198 -5.2468 38 1 -2.7961 6.2971 -7.0935 39 1 -3.0998 3.8678 -6.8403 40 1 -1.7146 1.9591 -4.9866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183807267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:19 Heat of formation + Delta-G solvation = -75.706895 kcal Electronic energy + Delta-G solvation = -21169.979878 eV Core-core repulsion = 17949.078639 eV Total energy + Delta-G solvation = -3220.901239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10070 -38.91614 -36.72643 -35.20351 -33.75712 -32.35129 -31.02586 -30.20633 -29.24174 -26.97950 -24.56108 -22.89393 -22.70137 -21.25826 -20.05215 -19.26969 -18.34458 -17.17419 -16.29917 -16.09693 -15.60164 -15.24568 -15.08922 -14.90782 -14.31074 -14.00691 -13.37337 -13.31238 -12.95297 -12.64309 -12.55534 -12.07145 -11.98226 -11.73241 -11.56411 -11.41986 -11.24410 -10.95478 -10.85027 -10.77063 -10.46687 -10.30278 -10.14519 -9.61354 -9.10155 -9.02041 -8.90602 -8.63132 -8.48961 -7.78689 -6.12226 -4.21551 1.09391 1.17348 3.22999 3.30989 3.33390 3.45059 3.47420 4.09216 4.15337 4.37983 4.73685 4.76798 4.89951 5.14182 5.19147 5.22395 5.30995 5.41140 5.54975 5.68139 5.84716 5.87890 5.99418 6.20059 6.31728 6.35564 6.41296 6.48010 6.50743 6.68060 6.69083 7.05800 7.22177 7.39290 7.49317 7.55723 7.63219 7.75173 7.91847 8.19648 8.70568 8.79327 9.18450 9.46312 10.93068 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030100 B = 0.003515 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.002130 B = 7963.172939 C = 8403.861035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.499 3.501 15 O -0.549 6.549 16 C -0.134 4.134 17 C -0.063 4.063 18 C -0.100 4.100 19 C -0.102 4.102 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.146 4.146 23 C 0.107 3.893 24 O -0.494 6.494 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 8.135 -15.955 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.428 6.428 16 C -0.174 4.174 17 C -0.100 4.100 18 C -0.101 4.101 19 C -0.120 4.120 20 C -0.147 4.147 21 C -0.132 4.132 22 C -0.165 4.165 23 C 0.062 3.938 24 O -0.305 6.305 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.069 8.150 -14.855 19.219 hybrid contribution 1.789 -0.211 -0.510 1.873 sum -7.280 7.939 -15.365 18.765 Atomic orbital electron populations 1.21835 0.98306 0.97983 1.01273 1.21929 0.92634 0.99859 1.02180 1.18769 0.94112 0.89180 0.81187 0.93390 1.21284 0.90820 1.38871 1.06229 0.92101 1.24897 0.98579 0.94857 0.95422 1.69910 1.35000 1.37662 1.09355 0.86414 0.84934 0.77762 0.78096 1.19771 1.20899 1.20884 1.46509 1.14743 1.56117 1.18454 1.20341 0.82709 0.79383 0.89136 1.90671 1.51421 1.59961 1.40749 1.21613 0.97588 1.00915 0.97284 1.20247 0.95763 1.00919 0.93094 1.20395 0.98774 0.94257 0.96660 1.21064 0.99398 0.93683 0.97889 1.21163 0.99859 1.00001 0.93635 1.20994 0.99619 0.93493 0.99050 1.21416 1.02347 0.95529 0.97171 1.18369 0.98777 0.83912 0.92711 1.84816 1.43495 1.14278 1.87870 0.94221 0.95929 0.93188 0.95137 0.88375 0.92639 0.78087 0.90127 0.89601 0.90189 0.89514 0.85473 0.85907 0.85901 0.85626 0.75457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.67 11.29 55.43 0.63 -24.05 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.71 -14.32 5.02 -54.93 -0.28 -14.60 16 14 C 0.50 9.47 6.40 -10.99 -0.07 9.40 16 15 O -0.55 -12.49 13.12 5.56 0.07 -12.42 16 16 C -0.13 -1.81 5.68 -27.88 -0.16 -1.97 16 17 C -0.06 -0.86 4.36 -27.88 -0.12 -0.98 16 18 C -0.10 -1.20 5.15 -104.48 -0.54 -1.74 16 19 C -0.10 -1.08 9.68 -39.61 -0.38 -1.46 16 20 C -0.13 -1.18 10.04 -39.56 -0.40 -1.57 16 21 C -0.11 -1.01 10.04 -39.61 -0.40 -1.41 16 22 C -0.15 -1.45 9.99 -39.43 -0.39 -1.84 16 23 C 0.11 1.23 6.68 -39.21 -0.26 0.97 16 24 O -0.49 -5.58 12.64 -19.43 -0.25 -5.83 16 25 H 0.04 0.86 5.65 -51.92 -0.29 0.56 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 6.75 8.54 -40.82 -0.35 6.40 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 35 H 0.09 1.35 7.65 -51.93 -0.40 0.95 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.39 2.82 9.06 45.56 0.41 3.24 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -31.40 332.30 -8.01 -39.42 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.08 Total: 9.64 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.10 Total: -12.65 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.35 Total: -38.64 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.17 Total: -18.25 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.40 -8.01 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.291 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds