Wall clock time and date at job start Mon Mar 30 2020 08:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47508 * 2 1 4 4 H 1.09001 * 109.46767 * 55.00052 * 3 2 1 5 5 C 1.50699 * 109.46946 * 175.00104 * 3 2 1 6 6 H 1.07998 * 119.99952 * 120.00577 * 5 3 2 7 7 C 1.37884 * 120.00012 * 299.99501 * 5 3 2 8 8 N 1.31514 * 119.99559 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 119.99911 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47270 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47277 * 120.00516 * 9 7 5 12 12 H 1.48510 * 109.47047 * 240.00364 * 9 7 5 13 13 N 1.46503 * 109.47112 * 295.00175 * 3 2 1 14 14 C 1.34770 * 119.99898 * 84.99530 * 13 3 2 15 15 O 1.21277 * 120.00267 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99646 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47268 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47268 * 179.97438 * 17 16 14 19 19 C 1.38158 * 120.02768 * 265.00026 * 18 17 16 20 20 C 1.38250 * 120.05410 * 180.02562 * 19 18 17 21 21 C 1.38281 * 120.11168 * 359.97438 * 20 19 18 22 22 C 1.38125 * 120.05855 * 359.97438 * 21 20 19 23 23 C 1.38711 * 120.02445 * 84.96087 * 18 17 16 24 24 O 1.35901 * 120.05828 * 0.03985 * 23 18 17 25 25 H 1.09007 * 109.46587 * 60.00021 * 1 2 3 26 26 H 1.09000 * 109.47297 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46993 * 300.00061 * 1 2 3 28 28 H 1.09005 * 109.47377 * 239.99967 * 2 1 3 29 29 H 1.09000 * 109.47026 * 120.00445 * 2 1 3 30 30 H 0.97002 * 119.99379 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99301 * 264.99876 * 13 3 2 32 32 H 1.08999 * 109.47378 * 60.00643 * 16 14 13 33 33 H 1.08996 * 109.47332 * 300.00209 * 16 14 13 34 34 H 1.08999 * 109.46560 * 59.99941 * 17 16 14 35 35 H 1.08996 * 109.46951 * 300.00242 * 17 16 14 36 36 H 1.08004 * 119.97750 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.94133 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.97275 * 180.02562 * 21 20 19 39 39 H 1.07994 * 120.03307 * 179.73079 * 22 21 20 40 40 H 0.96701 * 113.99785 * 269.95941 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1434 0.8782 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8809 1.3818 10 1 6.5987 1.5469 0.1947 11 1 6.3991 1.6164 2.6103 12 1 6.4970 -0.5179 1.4630 13 7 1.6525 2.0975 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3391 2.6327 -0.4341 16 6 0.0369 3.3387 -2.6544 17 6 -1.3820 3.8955 -2.5208 18 6 -1.7801 4.5703 -3.8081 19 6 -1.6133 5.9340 -3.9542 20 6 -1.9789 6.5537 -5.1347 21 6 -2.5117 5.8108 -6.1721 22 6 -2.6796 4.4470 -6.0315 23 6 -2.3137 3.8226 -4.8475 24 8 -2.4788 2.4811 -4.7062 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0619 2.9495 31 1 2.2721 2.1231 -1.9978 32 1 0.0682 2.6146 -3.4686 33 1 0.7283 4.1541 -2.8666 34 1 -1.4128 4.6196 -1.7067 35 1 -2.0736 3.0803 -2.3084 36 1 -1.1977 6.5165 -3.1452 37 1 -1.8480 7.6198 -5.2468 38 1 -2.7961 6.2971 -7.0935 39 1 -3.0998 3.8678 -6.8403 40 1 -1.7146 1.9591 -4.9866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183807267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:19 Heat of formation + Delta-G solvation = -96.851251 kcal Electronic energy + Delta-G solvation = -21170.896766 eV Core-core repulsion = 17949.078639 eV Total energy + Delta-G solvation = -3221.818127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04634 -40.38915 -37.50529 -37.00992 -34.86993 -34.26078 -32.80389 -31.06509 -30.25401 -28.83867 -25.83853 -24.68245 -23.46740 -22.34134 -21.63187 -20.99935 -19.13961 -18.87443 -17.58509 -17.19983 -17.02448 -16.71897 -16.28812 -16.02736 -15.91669 -15.02736 -14.71664 -14.62258 -14.53712 -13.89623 -13.60842 -13.59773 -13.30196 -13.16692 -12.89782 -12.82631 -12.70964 -12.65616 -12.42960 -12.14650 -12.05796 -11.83347 -11.57168 -11.27389 -11.02546 -10.64174 -10.48737 -9.75247 -9.57848 -9.44786 -8.15489 -6.32826 0.34259 0.41878 1.44005 1.45300 1.56971 1.93208 2.37361 2.66105 2.81069 3.13958 3.38656 3.80524 3.94359 4.05184 4.18841 4.28405 4.40479 4.49767 4.53377 4.58320 4.61843 4.69198 4.80536 4.91651 4.99943 5.08017 5.11815 5.25286 5.28952 5.45448 5.48991 5.57776 5.59568 5.65490 5.66786 5.81490 5.95792 5.98661 6.19021 6.76690 6.88295 7.05713 7.35173 7.66453 8.89960 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030100 B = 0.003515 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.002130 B = 7963.172939 C = 8403.861035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.708 5.708 14 C 0.495 3.505 15 O -0.591 6.591 16 C -0.117 4.117 17 C -0.053 4.053 18 C -0.118 4.118 19 C -0.111 4.111 20 C -0.129 4.129 21 C -0.109 4.109 22 C -0.153 4.153 23 C 0.094 3.906 24 O -0.510 6.510 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.022 0.978 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.264 0.736 31 H 0.404 0.596 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 9.120 -18.822 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.357 5.357 14 C 0.283 3.717 15 O -0.473 6.473 16 C -0.157 4.157 17 C -0.091 4.091 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.147 4.147 21 C -0.127 4.127 22 C -0.171 4.171 23 C 0.050 3.950 24 O -0.323 6.323 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -8.355 9.144 -17.772 21.662 hybrid contribution 1.498 -0.475 0.361 1.612 sum -6.857 8.668 -17.411 20.623 Atomic orbital electron populations 1.21672 0.97024 0.99025 1.00265 1.21777 0.93673 0.99282 1.01213 1.18336 0.93538 0.89139 0.81670 0.98688 1.21636 0.91538 1.38702 1.06615 0.90993 1.25793 1.03321 0.94458 0.95086 1.70067 1.36981 1.38469 1.09916 0.85325 0.79165 0.77795 0.78199 1.18344 1.21121 1.20500 1.46284 1.15777 1.56174 1.17422 1.21283 0.81543 0.78432 0.90483 1.90659 1.52493 1.61291 1.42838 1.21560 0.97873 1.01722 0.94536 1.20044 0.95228 0.99804 0.93989 1.20253 1.00757 0.94967 0.95916 1.21236 0.99564 0.93223 0.98882 1.21479 0.98986 1.01327 0.92935 1.21379 0.98207 0.93107 0.99965 1.21649 1.02171 0.96287 0.96992 1.18544 0.99225 0.83971 0.93257 1.84778 1.44738 1.14622 1.88170 0.93531 0.93730 0.95835 0.93982 0.91231 0.92677 0.76174 0.87177 0.87263 0.91743 0.91994 0.84898 0.83442 0.83089 0.84146 0.73740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.52 71.98 0.61 -4.98 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.28 14.16 2.24 44.24 0.10 14.26 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 5 C -0.55 -28.77 8.73 25.60 0.22 -28.55 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.72 5.29 84.66 0.45 1.16 16 8 N -0.92 -52.63 11.29 21.45 0.24 -52.38 16 9 Si 0.97 41.94 29.54 68.60 2.03 43.96 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 13 N -0.71 -28.38 5.02 -446.10 -2.24 -30.62 16 14 C 0.49 18.82 6.40 87.66 0.56 19.38 16 15 O -0.59 -27.89 13.12 -3.02 -0.04 -27.93 16 16 C -0.12 -3.02 5.68 29.85 0.17 -2.85 16 17 C -0.05 -1.44 4.36 29.85 0.13 -1.31 16 18 C -0.12 -2.69 5.15 -19.77 -0.10 -2.80 16 19 C -0.11 -2.15 9.68 22.25 0.22 -1.93 16 20 C -0.13 -1.98 10.04 22.28 0.22 -1.76 16 21 C -0.11 -1.57 10.04 22.25 0.22 -1.35 16 22 C -0.15 -2.64 9.99 22.37 0.22 -2.42 16 23 C 0.09 2.03 6.68 22.51 0.15 2.18 16 24 O -0.51 -10.96 12.64 -92.44 -1.17 -12.13 16 25 H 0.05 2.03 5.65 -2.38 -0.01 2.01 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.02 1.15 7.85 -2.39 -0.02 1.14 16 28 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.40 13.47 8.54 -92.71 -0.79 12.68 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 1.91 8.01 -2.39 -0.02 1.89 16 35 H 0.06 1.98 7.65 -2.39 -0.02 1.96 16 36 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.40 5.25 9.06 -74.06 -0.67 4.58 16 Total: -1.00 -70.15 332.30 1.76 -68.39 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.41 Total: 27.47 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 3.35 Total: -16.76 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -2.00 Total: -83.01 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.21 Total: -40.06 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -70.15 1.76 -68.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.459 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds