Wall clock time and date at job start Mon Mar 30 2020 08:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34782 * 119.99578 * 2 1 4 4 O 1.21505 * 119.99197 * 180.02562 * 3 2 1 5 5 O 1.34638 * 120.00363 * 359.97438 * 3 2 1 6 6 C 1.45195 * 117.00179 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47156 * 60.00092 * 6 5 3 8 8 C 1.53006 * 109.47463 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.47386 * 299.99961 * 6 5 3 10 10 C 1.39139 * 120.00080 * 179.97438 * 2 1 3 11 11 C 1.38642 * 120.28426 * 90.23836 * 10 2 1 12 12 C 1.38220 * 120.03722 * 180.27831 * 11 10 2 13 13 C 1.38870 * 120.61203 * 359.73468 * 12 11 10 14 14 C 1.36458 * 120.57554 * 0.02562 * 13 12 11 15 15 C 1.40729 * 119.94824 * 359.97438 * 14 13 12 16 16 C 1.41069 * 120.30496 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00479 * 208.78444 * 16 15 14 18 18 C 1.39951 * 120.00399 * 28.77956 * 16 15 14 19 19 N 1.30851 * 120.00667 * 197.67293 * 18 16 15 20 20 Si 1.86800 * 119.99282 * 17.67198 * 18 16 15 21 21 H 1.48503 * 109.47183 * 269.99912 * 20 18 16 22 22 H 1.48501 * 109.47764 * 30.00123 * 20 18 16 23 23 H 1.48508 * 109.47045 * 150.00016 * 20 18 16 24 24 H 1.09005 * 109.47434 * 270.00077 * 1 2 3 25 25 H 1.09002 * 109.47170 * 30.00125 * 1 2 3 26 26 H 1.09000 * 109.46767 * 150.00378 * 1 2 3 27 27 H 1.09005 * 109.47038 * 60.00210 * 7 6 5 28 28 H 1.08996 * 109.46911 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.46889 * 300.00365 * 7 6 5 30 30 H 1.09004 * 109.46837 * 59.99668 * 8 6 5 31 31 H 1.08992 * 109.47296 * 179.97438 * 8 6 5 32 32 H 1.09003 * 109.46579 * 300.00015 * 8 6 5 33 33 H 1.09007 * 109.46641 * 59.99604 * 9 6 5 34 34 H 1.08992 * 109.47513 * 179.97438 * 9 6 5 35 35 H 1.09004 * 109.47043 * 300.00411 * 9 6 5 36 36 H 1.08008 * 119.98231 * 359.97438 * 11 10 2 37 37 H 1.07995 * 119.69482 * 179.76560 * 12 11 10 38 38 H 1.07997 * 119.70804 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.02854 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99794 * 355.44788 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3539 1.1672 -0.0005 5 8 1.4657 2.3333 -0.0005 6 6 2.2564 3.5510 -0.0011 7 6 3.1390 3.5854 -1.2503 8 6 1.3244 4.7644 -0.0010 9 6 3.1391 3.5866 1.2481 10 6 2.1607 -1.2050 0.0005 11 6 2.5146 -1.8085 -1.1964 12 6 3.2007 -3.0084 -1.1899 13 6 3.5471 -3.6185 0.0085 14 6 3.2156 -3.0440 1.2011 15 6 2.5171 -1.8225 1.2224 16 6 2.1702 -1.2222 2.4510 17 1 1.2930 -0.5957 2.5173 18 6 2.9626 -1.4386 3.5840 19 7 2.4831 -1.1879 4.7755 20 14 4.7048 -2.0855 3.3955 21 1 4.6880 -3.5700 3.4293 22 1 5.2660 -1.6263 2.0995 23 1 5.5457 -1.5744 4.5078 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 2.5102 3.5602 -2.1403 28 1 3.7323 4.4998 -1.2509 29 1 3.8030 2.7210 -1.2500 30 1 0.6958 4.7397 0.8893 31 1 1.9180 5.6785 -0.0009 32 1 0.6952 4.7393 -0.8908 33 1 3.8031 2.7221 1.2485 34 1 3.7330 4.5005 1.2475 35 1 2.5102 3.5620 2.1382 36 1 2.2498 -1.3433 -2.1345 37 1 3.4703 -3.4756 -2.1255 38 1 4.0835 -4.5557 -0.0035 39 1 3.4898 -3.5260 2.1279 40 1 1.6035 -0.7902 4.8704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260579324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:45 Heat of formation + Delta-G solvation = -60.391221 kcal Electronic energy + Delta-G solvation = -22691.466810 eV Core-core repulsion = 19471.229708 eV Total energy + Delta-G solvation = -3220.237102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29654 -38.37861 -36.39402 -34.69163 -33.76885 -33.45743 -30.29935 -29.14075 -27.25548 -27.11571 -26.18923 -24.83631 -22.69313 -21.36047 -20.11701 -18.80230 -18.18329 -17.23311 -16.49845 -15.76466 -15.63928 -14.73130 -14.52878 -14.14343 -13.89744 -13.73878 -13.31973 -12.88582 -12.81039 -12.60129 -12.34989 -12.13941 -11.93813 -11.92815 -11.66294 -11.56795 -11.31819 -11.13081 -10.94862 -10.92780 -10.62622 -10.33118 -9.96812 -9.85923 -9.49555 -9.33031 -9.10719 -8.03990 -7.75720 -7.73283 -7.27010 -4.58289 2.39433 2.66524 2.89424 3.20500 3.39047 3.59097 3.60354 4.02163 4.47365 4.55721 4.94620 4.97235 5.13231 5.30688 5.58085 5.66150 5.70051 5.82698 5.83143 5.91075 5.92682 5.97527 6.05738 6.09321 6.13823 6.19321 6.32932 6.53162 6.60883 6.67415 6.83171 6.89736 7.02855 7.31753 7.50506 7.60488 7.72641 7.77472 7.92547 8.11705 8.35429 8.48075 8.72335 9.20238 9.96823 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.007488 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.167663 B = 3738.466264 C = 4462.378048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.521 5.521 3 C 0.650 3.350 4 O -0.557 6.557 5 O -0.370 6.370 6 C 0.135 3.865 7 C -0.181 4.181 8 C -0.137 4.137 9 C -0.183 4.183 10 C 0.021 3.979 11 C -0.058 4.058 12 C -0.246 4.246 13 C -0.067 4.067 14 C -0.237 4.237 15 C 0.108 3.892 16 C -0.495 4.495 17 H 0.076 0.924 18 C 0.044 3.956 19 N -0.811 5.811 20 Si 1.071 2.929 21 H -0.276 1.276 22 H -0.258 1.258 23 H -0.290 1.290 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 6.703 -7.592 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.255 5.255 3 C 0.406 3.594 4 O -0.445 6.445 5 O -0.285 6.285 6 C 0.098 3.902 7 C -0.239 4.239 8 C -0.195 4.195 9 C -0.240 4.240 10 C -0.069 4.069 11 C -0.077 4.077 12 C -0.266 4.266 13 C -0.085 4.085 14 C -0.257 4.257 15 C 0.103 3.897 16 C -0.523 4.523 17 H 0.094 0.906 18 C -0.176 4.176 19 N -0.433 5.433 20 Si 0.897 3.103 21 H -0.203 1.203 22 H -0.182 1.182 23 H -0.217 1.217 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.667 6.380 -6.637 9.231 hybrid contribution -1.593 0.615 -0.693 1.843 sum -2.260 6.996 -7.331 10.382 Atomic orbital electron populations 1.21701 0.79708 1.01995 1.01642 1.43124 1.05681 1.01684 1.74984 1.18121 0.84170 0.80684 0.76455 1.90841 1.12234 1.86372 1.55075 1.86258 1.41049 1.13853 1.87370 1.21920 0.90783 0.81158 0.96318 1.22501 1.00684 1.04286 0.96385 1.21824 0.99503 0.95147 1.02998 1.22501 1.00806 1.04230 0.96486 1.16978 1.09993 0.87163 0.92808 1.20736 0.96511 0.94974 0.95517 1.20203 1.10708 0.99130 0.96523 1.20413 0.97327 0.97873 0.92932 1.20831 1.10018 0.97715 0.97093 1.17852 0.88869 0.90446 0.92503 1.20502 1.10770 1.27110 0.93954 0.90603 1.27307 1.05944 0.93091 0.91218 1.70565 1.19923 1.28192 1.24583 0.83642 0.73008 0.76559 0.77103 1.20308 1.18225 1.21738 0.93031 0.91495 0.91411 0.92599 0.91663 0.89148 0.91670 0.90579 0.91827 0.88957 0.91758 0.92310 0.88804 0.88485 0.88509 0.87418 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 10.40 59.85 0.62 2.25 16 2 N -0.52 -11.43 2.14 -125.80 -0.27 -11.70 16 3 C 0.65 14.45 7.67 54.06 0.41 14.86 16 4 O -0.56 -13.74 11.85 -19.28 -0.23 -13.96 16 5 O -0.37 -6.99 8.71 -40.32 -0.35 -7.35 16 6 C 0.14 2.13 1.13 -90.62 -0.10 2.02 16 7 C -0.18 -2.68 8.37 37.16 0.31 -2.37 16 8 C -0.14 -1.61 8.85 37.16 0.33 -1.28 16 9 C -0.18 -3.02 8.37 37.16 0.31 -2.71 16 10 C 0.02 0.50 4.46 -83.17 -0.37 0.13 16 11 C -0.06 -1.27 9.96 -39.44 -0.39 -1.66 16 12 C -0.25 -5.15 10.04 -39.35 -0.39 -5.54 16 13 C -0.07 -1.45 9.97 -39.99 -0.40 -1.85 16 14 C -0.24 -5.74 7.22 -39.28 -0.28 -6.02 16 15 C 0.11 2.78 5.15 -106.65 -0.55 2.23 16 16 C -0.50 -13.41 9.04 -37.87 -0.34 -13.76 16 17 H 0.08 2.13 7.43 -52.49 -0.39 1.74 16 18 C 0.04 1.19 5.42 -17.33 -0.09 1.10 16 19 N -0.81 -21.96 13.66 55.55 0.76 -21.20 16 20 Si 1.07 25.33 24.90 -169.99 -4.23 21.10 16 21 H -0.28 -6.05 6.43 56.52 0.36 -5.69 16 22 H -0.26 -6.32 7.03 56.52 0.40 -5.93 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H 0.05 0.93 7.79 -51.93 -0.40 0.53 16 25 H 0.07 1.02 7.37 -51.93 -0.38 0.64 16 26 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.62 5.88 -51.93 -0.31 1.32 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.86 5.88 -51.93 -0.31 1.56 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.57 4.38 -52.48 -0.23 2.34 16 40 H 0.29 7.52 8.73 -40.82 -0.36 7.16 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -29.78 324.55 -6.23 -36.01 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.86 Total: 4.79 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.94 Total: -12.59 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.49 Total: -32.90 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.58 Total: -21.31 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.23 Total: 21.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.78 -6.23 -36.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260579324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.381 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds