Wall clock time and date at job start Mon Mar 30 2020 08:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34782 * 119.99578 * 2 1 4 4 O 1.21505 * 119.99197 * 180.02562 * 3 2 1 5 5 O 1.34638 * 120.00363 * 359.97438 * 3 2 1 6 6 C 1.45195 * 117.00179 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47156 * 60.00092 * 6 5 3 8 8 C 1.53006 * 109.47463 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.47386 * 299.99961 * 6 5 3 10 10 C 1.39139 * 120.00080 * 179.97438 * 2 1 3 11 11 C 1.38642 * 120.28426 * 90.23836 * 10 2 1 12 12 C 1.38220 * 120.03722 * 180.27831 * 11 10 2 13 13 C 1.38870 * 120.61203 * 359.73468 * 12 11 10 14 14 C 1.36458 * 120.57554 * 0.02562 * 13 12 11 15 15 C 1.40729 * 119.94824 * 359.97438 * 14 13 12 16 16 C 1.41069 * 120.30496 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00479 * 208.78444 * 16 15 14 18 18 C 1.39951 * 120.00399 * 28.77956 * 16 15 14 19 19 N 1.30851 * 120.00667 * 197.67293 * 18 16 15 20 20 Si 1.86800 * 119.99282 * 17.67198 * 18 16 15 21 21 H 1.48503 * 109.47183 * 269.99912 * 20 18 16 22 22 H 1.48501 * 109.47764 * 30.00123 * 20 18 16 23 23 H 1.48508 * 109.47045 * 150.00016 * 20 18 16 24 24 H 1.09005 * 109.47434 * 270.00077 * 1 2 3 25 25 H 1.09002 * 109.47170 * 30.00125 * 1 2 3 26 26 H 1.09000 * 109.46767 * 150.00378 * 1 2 3 27 27 H 1.09005 * 109.47038 * 60.00210 * 7 6 5 28 28 H 1.08996 * 109.46911 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.46889 * 300.00365 * 7 6 5 30 30 H 1.09004 * 109.46837 * 59.99668 * 8 6 5 31 31 H 1.08992 * 109.47296 * 179.97438 * 8 6 5 32 32 H 1.09003 * 109.46579 * 300.00015 * 8 6 5 33 33 H 1.09007 * 109.46641 * 59.99604 * 9 6 5 34 34 H 1.08992 * 109.47513 * 179.97438 * 9 6 5 35 35 H 1.09004 * 109.47043 * 300.00411 * 9 6 5 36 36 H 1.08008 * 119.98231 * 359.97438 * 11 10 2 37 37 H 1.07995 * 119.69482 * 179.76560 * 12 11 10 38 38 H 1.07997 * 119.70804 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.02854 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99794 * 355.44788 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3539 1.1672 -0.0005 5 8 1.4657 2.3333 -0.0005 6 6 2.2564 3.5510 -0.0011 7 6 3.1390 3.5854 -1.2503 8 6 1.3244 4.7644 -0.0010 9 6 3.1391 3.5866 1.2481 10 6 2.1607 -1.2050 0.0005 11 6 2.5146 -1.8085 -1.1964 12 6 3.2007 -3.0084 -1.1899 13 6 3.5471 -3.6185 0.0085 14 6 3.2156 -3.0440 1.2011 15 6 2.5171 -1.8225 1.2224 16 6 2.1702 -1.2222 2.4510 17 1 1.2930 -0.5957 2.5173 18 6 2.9626 -1.4386 3.5840 19 7 2.4831 -1.1879 4.7755 20 14 4.7048 -2.0855 3.3955 21 1 4.6880 -3.5700 3.4293 22 1 5.2660 -1.6263 2.0995 23 1 5.5457 -1.5744 4.5078 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 2.5102 3.5602 -2.1403 28 1 3.7323 4.4998 -1.2509 29 1 3.8030 2.7210 -1.2500 30 1 0.6958 4.7397 0.8893 31 1 1.9180 5.6785 -0.0009 32 1 0.6952 4.7393 -0.8908 33 1 3.8031 2.7221 1.2485 34 1 3.7330 4.5005 1.2475 35 1 2.5102 3.5620 2.1382 36 1 2.2498 -1.3433 -2.1345 37 1 3.4703 -3.4756 -2.1255 38 1 4.0835 -4.5557 -0.0035 39 1 3.4898 -3.5260 2.1279 40 1 1.6035 -0.7902 4.8704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260579324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:45 Heat of formation + Delta-G solvation = -77.103125 kcal Electronic energy + Delta-G solvation = -22692.191492 eV Core-core repulsion = 19471.229708 eV Total energy + Delta-G solvation = -3220.961784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.89645 -40.06539 -37.99157 -36.40575 -35.70238 -34.81091 -32.16844 -30.86700 -28.38449 -28.30045 -27.77200 -26.68382 -24.33785 -23.18058 -21.70538 -20.35698 -20.14019 -18.85913 -18.10079 -17.39883 -17.14257 -16.40980 -16.19507 -15.85985 -15.41254 -15.24920 -14.88429 -14.59908 -14.37717 -14.19541 -13.96946 -13.41113 -13.34723 -13.15080 -13.09947 -12.85866 -12.84039 -12.77310 -12.49185 -12.39195 -12.24809 -12.12847 -11.76624 -11.39561 -11.36190 -11.01486 -10.96005 -9.79314 -9.61827 -9.51808 -9.24567 -6.58980 0.61817 0.81799 1.29619 1.34093 1.51088 1.71339 1.90353 2.11474 2.61458 3.03857 3.42860 3.76939 3.79772 3.94748 4.24830 4.26252 4.39430 4.48791 4.50507 4.59196 4.70428 4.70893 4.73523 4.74891 4.81023 4.83429 4.86780 5.02495 5.09484 5.22289 5.28390 5.36301 5.41885 5.47875 5.57668 5.77663 5.93534 5.98285 6.07441 6.35425 6.46784 6.61981 6.80219 7.51179 7.94818 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.007488 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.167663 B = 3738.466264 C = 4462.378048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.531 5.531 3 C 0.646 3.354 4 O -0.589 6.589 5 O -0.368 6.368 6 C 0.120 3.880 7 C -0.175 4.175 8 C -0.129 4.129 9 C -0.180 4.180 10 C 0.015 3.985 11 C -0.070 4.070 12 C -0.223 4.223 13 C -0.071 4.071 14 C -0.251 4.251 15 C 0.080 3.920 16 C -0.524 4.524 17 H 0.046 0.954 18 C 0.011 3.989 19 N -0.840 5.840 20 Si 1.099 2.901 21 H -0.245 1.245 22 H -0.275 1.275 23 H -0.284 1.284 24 H 0.037 0.963 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 6.720 -10.286 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.265 5.265 3 C 0.402 3.598 4 O -0.479 6.479 5 O -0.284 6.284 6 C 0.084 3.916 7 C -0.232 4.232 8 C -0.186 4.186 9 C -0.237 4.237 10 C -0.076 4.076 11 C -0.090 4.090 12 C -0.242 4.242 13 C -0.088 4.088 14 C -0.271 4.271 15 C 0.076 3.924 16 C -0.553 4.553 17 H 0.065 0.935 18 C -0.203 4.203 19 N -0.464 5.464 20 Si 0.922 3.078 21 H -0.170 1.170 22 H -0.200 1.200 23 H -0.211 1.211 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.125 0.875 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.317 6.393 -9.334 11.317 hybrid contribution -1.726 0.636 -0.129 1.844 sum -2.043 7.029 -9.463 11.963 Atomic orbital electron populations 1.21831 0.77545 1.04076 1.01419 1.43365 1.07129 1.01320 1.74731 1.18274 0.83906 0.81545 0.76043 1.90824 1.13672 1.87054 1.56399 1.86267 1.41378 1.13827 1.86894 1.22462 0.91878 0.81080 0.96211 1.22426 1.00339 1.04130 0.96275 1.21850 0.99239 0.93921 1.03589 1.22462 1.00495 1.03952 0.96829 1.17331 1.09413 0.87781 0.93085 1.21095 0.96564 0.95637 0.95663 1.20783 1.07459 0.97884 0.98067 1.20871 0.96799 0.99173 0.92006 1.21018 1.10167 0.97394 0.98487 1.18142 0.90009 0.91472 0.92733 1.20353 1.10913 1.28681 0.95387 0.93538 1.28171 1.07966 0.93143 0.90980 1.70619 1.19873 1.30994 1.24909 0.83278 0.70233 0.78144 0.76186 1.16999 1.20031 1.21089 0.94413 0.88908 0.89766 0.91369 0.88607 0.92799 0.91858 0.87478 0.90494 0.93251 0.88319 0.93362 0.86498 0.84365 0.84520 0.87520 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.28 10.40 127.77 1.33 4.61 16 2 N -0.53 -23.58 2.14 -782.32 -1.68 -25.25 16 3 C 0.65 29.29 7.67 129.79 1.00 30.29 16 4 O -0.59 -30.01 11.85 19.82 0.23 -29.78 16 5 O -0.37 -13.94 8.71 -55.47 -0.48 -14.42 16 6 C 0.12 3.64 1.13 -10.79 -0.01 3.63 16 7 C -0.17 -4.88 8.37 71.98 0.60 -4.28 16 8 C -0.13 -2.65 8.85 71.98 0.64 -2.02 16 9 C -0.18 -5.99 8.37 71.98 0.60 -5.39 16 10 C 0.01 0.70 4.46 38.87 0.17 0.87 16 11 C -0.07 -2.91 9.96 22.36 0.22 -2.69 16 12 C -0.22 -8.39 10.04 22.42 0.22 -8.17 16 13 C -0.07 -2.81 9.97 22.01 0.22 -2.59 16 14 C -0.25 -11.92 7.22 22.46 0.16 -11.75 16 15 C 0.08 4.22 5.15 -21.18 -0.11 4.11 16 16 C -0.52 -29.89 9.04 23.38 0.21 -29.68 16 17 H 0.05 2.82 7.43 -2.91 -0.02 2.80 16 18 C 0.01 0.63 5.42 85.25 0.46 1.09 16 19 N -0.84 -47.95 13.66 21.83 0.30 -47.65 16 20 Si 1.10 52.14 24.90 68.60 1.71 53.85 16 21 H -0.24 -10.26 6.43 99.48 0.64 -9.62 16 22 H -0.27 -13.63 7.03 99.48 0.70 -12.93 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H 0.04 1.42 7.79 -2.38 -0.02 1.40 16 25 H 0.09 2.74 7.37 -2.39 -0.02 2.73 16 26 H 0.08 2.64 8.05 -2.39 -0.02 2.62 16 27 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.93 5.88 -2.39 -0.01 1.92 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 2.08 5.88 -2.38 -0.01 2.07 16 34 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 39 H 0.11 5.00 4.38 -2.91 -0.01 4.99 16 40 H 0.28 15.64 8.73 -92.71 -0.81 14.83 16 Total: -1.00 -68.64 324.55 6.72 -61.92 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.91 Total: 23.30 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 5.72 Total: -21.97 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.38 Total: -72.90 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.25 Total: -44.20 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 1.71 Total: 53.85 kcal Total: -68.64 6.72 -61.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260579324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.180 kcal (2) G-P(sol) polarization free energy of solvation -68.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds