Wall clock time and date at job start Mon Mar 30 2020 07:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.56376 * 2 1 4 4 C 1.53005 * 117.49849 * 214.31470 * 2 1 3 5 5 C 1.52998 * 59.99877 * 252.51153 * 4 2 1 6 6 H 1.08999 * 117.52236 * 107.48203 * 5 4 2 7 7 C 1.50703 * 117.49681 * 252.50868 * 5 4 2 8 8 O 1.21281 * 119.99837 * 68.62451 * 7 5 4 9 9 N 1.34781 * 120.00021 * 248.62087 * 7 5 4 10 10 C 1.46499 * 119.99786 * 179.97438 * 9 7 5 11 11 C 1.50701 * 109.46992 * 90.00095 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.46504 * 119.99832 * 0.02562 * 9 7 5 20 20 C 1.50704 * 109.46773 * 269.99817 * 19 9 7 21 21 C 1.34510 * 125.79103 * 89.99833 * 20 19 9 22 22 C 1.41379 * 106.84068 * 179.97438 * 21 20 19 23 23 C 1.34509 * 106.84172 * 0.02562 * 22 21 20 24 24 O 1.34300 * 125.78503 * 269.69309 * 20 19 9 25 25 H 1.08994 * 109.46956 * 274.30910 * 1 2 3 26 26 H 1.08999 * 109.46767 * 34.30952 * 1 2 3 27 27 H 1.08997 * 109.47122 * 154.30483 * 1 2 3 28 28 H 1.09003 * 109.47175 * 205.68854 * 3 2 1 29 29 H 1.08997 * 109.46966 * 325.69028 * 3 2 1 30 30 H 1.08998 * 109.46680 * 85.69030 * 3 2 1 31 31 H 1.08999 * 117.50266 * 145.02157 * 4 2 1 32 32 H 1.09002 * 117.49463 * 0.02562 * 4 2 1 33 33 H 1.09002 * 109.47391 * 330.00086 * 10 9 7 34 34 H 1.09001 * 109.46813 * 210.00142 * 10 9 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 36 36 H 1.08992 * 109.47334 * 29.99480 * 19 9 7 37 37 H 1.08994 * 109.46680 * 150.00103 * 19 9 7 38 38 H 1.08003 * 126.57734 * 359.97438 * 21 20 19 39 39 H 1.08004 * 126.58021 * 180.02562 * 22 21 20 40 40 H 1.08000 * 125.78942 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7649 6 1 1.6112 -1.8583 1.2685 7 6 3.5293 -0.7813 1.4607 8 8 3.9718 0.3464 1.4012 9 7 4.1937 -1.7305 2.1493 10 6 5.4508 -1.4003 2.8252 11 6 5.1598 -0.9410 4.2307 12 1 4.1405 -0.8998 4.5852 13 6 6.1950 -0.5746 5.0645 14 7 7.4363 -0.6254 4.6330 15 14 5.8343 -0.0061 6.8069 16 1 5.1433 -1.0913 7.5487 17 1 7.1085 0.3287 7.4921 18 1 4.9643 1.1967 6.7651 19 6 3.6594 -3.0927 2.2207 20 6 2.7533 -3.2146 3.4188 21 6 1.4294 -2.9766 3.4313 22 6 0.9834 -3.2122 4.7520 23 6 2.0614 -3.5796 5.4677 24 8 3.1296 -3.5848 4.6537 25 1 -0.3633 0.0772 1.0247 26 1 -0.3633 0.8489 -0.5793 27 1 -0.3633 -0.9260 -0.4456 28 1 3.1825 1.3084 -0.4455 29 1 1.5813 2.0743 -0.5792 30 1 2.2773 1.7412 1.0248 31 1 3.1716 -0.8752 -1.2684 32 1 1.6112 -1.8582 -1.2688 33 1 5.9580 -0.6039 2.2805 34 1 6.0894 -2.2831 2.8562 35 1 8.1645 -0.3673 5.2195 36 1 3.0943 -3.3094 1.3143 37 1 4.4823 -3.8013 2.3140 38 1 0.8236 -2.6652 2.5932 39 1 -0.0287 -3.1158 5.1164 40 1 2.0662 -3.8326 6.5177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269739858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:22 Heat of formation + Delta-G solvation = 7.707605 kcal Electronic energy + Delta-G solvation = -22405.973348 eV Core-core repulsion = 19188.689234 eV Total energy + Delta-G solvation = -3217.284115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.09760 -39.73699 -37.00065 -35.07714 -32.81517 -32.39545 -30.04646 -29.41595 -27.36934 -27.24122 -25.47729 -24.06373 -21.92138 -21.31667 -20.37122 -19.39220 -18.04739 -17.28333 -16.55827 -16.26660 -15.36141 -15.12979 -14.58919 -14.49298 -14.29940 -13.67501 -13.41333 -13.31497 -12.73104 -12.66202 -12.48510 -12.34564 -12.10516 -12.06954 -11.74082 -11.57271 -11.47984 -11.19824 -11.03243 -10.84976 -10.57234 -10.13097 -9.96631 -9.62136 -9.54970 -9.48713 -8.73030 -8.38763 -8.13468 -7.73645 -5.99672 -4.01937 2.13775 2.93321 3.15178 3.34702 3.38213 3.42197 3.49946 3.89984 4.07535 4.49163 4.82188 4.86251 4.98797 5.09290 5.24250 5.27119 5.35432 5.35895 5.47749 5.49562 5.70914 5.74643 5.78557 5.80272 6.02337 6.06219 6.14223 6.17502 6.24945 6.28256 6.43063 6.49466 6.83219 6.86741 7.03658 7.42267 7.50598 7.62769 7.96879 8.27305 8.35625 8.94299 9.09792 9.61995 11.09040 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.007329 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.904097 B = 3819.610567 C = 4865.528578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.101 4.101 4 C -0.152 4.152 5 C -0.191 4.191 6 H 0.120 0.880 7 C 0.539 3.461 8 O -0.527 6.527 9 N -0.592 5.592 10 C 0.246 3.754 11 C -0.514 4.514 12 H 0.055 0.945 13 C 0.062 3.938 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.190 3.810 20 C -0.002 4.002 21 C -0.220 4.220 22 C -0.221 4.221 23 C -0.041 4.041 24 O -0.152 6.152 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 -6.143 -7.162 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.158 4.158 4 C -0.190 4.190 5 C -0.212 4.212 6 H 0.137 0.863 7 C 0.326 3.674 8 O -0.404 6.404 9 N -0.323 5.323 10 C 0.127 3.873 11 C -0.553 4.553 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.537 5.537 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.203 1.203 19 C 0.065 3.935 20 C -0.055 4.055 21 C -0.240 4.240 22 C -0.240 4.240 23 C -0.110 4.110 24 O -0.045 6.045 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -12.688 -5.570 -7.051 15.548 hybrid contribution -0.478 0.215 1.418 1.512 sum -13.166 -5.355 -5.633 15.289 Atomic orbital electron populations 1.21374 0.92008 1.01745 1.02017 1.21521 0.94255 0.92093 1.01916 1.21333 0.99450 0.92275 1.02779 1.23176 1.02840 1.01451 0.91496 1.22678 0.98938 1.04398 0.95197 0.86279 1.19431 0.84108 0.84890 0.78938 1.90669 1.67911 1.20061 1.61759 1.48287 1.25325 1.07931 1.50789 1.19356 0.78839 0.97020 0.92053 1.21312 0.93171 1.43933 0.96880 0.92654 1.24874 0.94908 0.95623 0.98548 1.69914 0.98593 1.48697 1.36504 0.86619 0.77430 0.79233 0.84529 1.20297 1.21219 1.20314 1.19847 0.96245 0.86525 0.90872 1.23048 0.94290 1.02212 0.85922 1.21494 0.94538 1.09600 0.98361 1.21674 0.99775 1.08344 0.94230 1.23945 0.84619 1.05910 0.96549 1.84149 1.35776 1.66186 1.18417 0.92112 0.91925 0.92561 0.91610 0.93876 0.91215 0.88392 0.88355 0.93602 0.94957 0.92788 0.88275 0.88876 0.84112 0.84136 0.78844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.85 37.16 0.37 -0.88 16 2 C -0.10 -1.35 2.70 -154.50 -0.42 -1.77 16 3 C -0.10 -1.59 8.09 37.16 0.30 -1.29 16 4 C -0.15 -1.92 9.52 -26.73 -0.25 -2.17 16 5 C -0.19 -2.94 4.52 -91.77 -0.41 -3.35 16 6 H 0.12 1.64 4.36 -51.93 -0.23 1.42 16 7 C 0.54 11.19 7.44 -10.98 -0.08 11.11 16 8 O -0.53 -12.92 12.68 5.56 0.07 -12.85 16 9 N -0.59 -12.57 2.44 -176.43 -0.43 -13.00 16 10 C 0.25 6.45 5.20 -5.19 -0.03 6.42 16 11 C -0.51 -14.80 9.39 -34.44 -0.32 -15.12 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 14 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 15 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 C 0.19 3.18 5.68 -5.19 -0.03 3.15 16 20 C 0.00 -0.03 6.90 -35.62 -0.25 -0.28 16 21 C -0.22 -3.47 10.09 -39.71 -0.40 -3.87 16 22 C -0.22 -3.32 10.91 -39.71 -0.43 -3.75 16 23 C -0.04 -0.66 12.09 29.41 0.36 -0.30 16 24 O -0.15 -2.93 10.65 5.70 0.06 -2.87 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 27 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 28 H 0.06 1.13 7.01 -51.93 -0.36 0.77 16 29 H 0.04 0.56 7.92 -51.93 -0.41 0.15 16 30 H 0.07 1.28 7.26 -51.93 -0.38 0.90 16 31 H 0.10 1.31 8.05 -51.93 -0.42 0.89 16 32 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 33 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 34 H 0.03 0.86 7.89 -51.93 -0.41 0.45 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.10 1.28 6.64 -51.93 -0.34 0.94 16 37 H 0.09 1.48 7.89 -51.93 -0.41 1.07 16 38 H 0.14 1.90 6.10 -52.48 -0.32 1.58 16 39 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.19 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -33.74 332.56 -6.99 -40.73 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.72 Total: 2.11 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.70 Total: -10.40 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.31 Total: -39.28 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.13 Total: -15.72 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.74 -6.99 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269739858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.440 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds