Wall clock time and date at job start Mon Mar 30 2020 07:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47170 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46998 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46855 * 55.00488 * 5 4 3 7 7 N 1.46499 * 109.47160 * 295.00364 * 5 4 3 8 8 C 1.38856 * 119.99767 * 155.00406 * 7 5 4 9 9 C 1.39567 * 119.84465 * 359.72043 * 8 7 5 10 10 C 1.36335 * 120.16179 * 179.71971 * 9 8 7 11 11 C 1.40885 * 119.83704 * 0.55830 * 10 9 8 12 12 C 1.41137 * 120.15831 * 179.69926 * 11 10 9 13 13 H 1.08001 * 120.00353 * 204.62652 * 12 11 10 14 14 C 1.39862 * 119.99909 * 24.62061 * 12 11 10 15 15 N 1.30898 * 120.00320 * 17.96626 * 14 12 11 16 16 Si 1.86800 * 119.99919 * 197.96895 * 14 12 11 17 17 H 1.48500 * 109.47537 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47467 * 119.99975 * 16 14 12 19 19 H 1.48500 * 109.47123 * 240.00135 * 16 14 12 20 20 C 1.40889 * 119.68611 * 359.71916 * 11 10 9 21 21 C 1.36328 * 119.83764 * 359.97438 * 20 11 10 22 22 C 1.50696 * 109.46934 * 175.00220 * 5 4 3 23 23 O 1.20827 * 120.00191 * 120.00371 * 22 5 4 24 24 O 1.34234 * 120.00195 * 300.00247 * 22 5 4 25 25 H 1.09003 * 109.47317 * 59.99972 * 1 2 3 26 26 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47212 * 299.99728 * 1 2 3 28 28 H 1.09000 * 109.47212 * 240.00272 * 2 1 3 29 29 H 1.09003 * 109.47317 * 120.00028 * 2 1 3 30 30 H 1.08993 * 109.47073 * 300.00084 * 3 2 1 31 31 H 1.09000 * 109.46867 * 60.00061 * 3 2 1 32 32 H 1.08994 * 109.46992 * 300.00473 * 4 3 2 33 33 H 1.09001 * 109.46534 * 60.00050 * 4 3 2 34 34 H 0.96999 * 120.00441 * 334.99955 * 7 5 4 35 35 H 1.07998 * 119.91575 * 359.97438 * 9 8 7 36 36 H 1.08000 * 120.08398 * 180.27938 * 10 9 8 37 37 H 0.97000 * 120.00833 * 179.97438 * 15 14 12 38 38 H 1.08005 * 120.07687 * 179.97438 * 20 11 10 39 39 H 1.08007 * 119.92025 * 179.97438 * 21 20 11 40 40 H 0.96696 * 116.99981 * 180.02562 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6450 3.4238 0.8431 7 7 3.6928 3.5404 -1.2504 8 6 3.5622 4.9220 -1.2992 9 6 3.7948 5.6825 -0.1523 10 6 3.6740 7.0399 -0.1944 11 6 3.3019 7.6736 -1.3964 12 6 3.1687 9.0778 -1.4459 13 1 2.5291 9.5338 -2.1871 14 6 3.8648 9.8788 -0.5349 15 7 4.8878 9.3893 0.1188 16 14 3.3348 11.6474 -0.2511 17 1 2.1599 11.9553 -1.1055 18 1 2.9698 11.8318 1.1765 19 1 4.4528 12.5610 -0.5981 20 6 3.0630 6.8989 -2.5487 21 6 3.1937 5.5430 -2.4936 22 6 5.5817 2.8868 0.1257 23 8 6.2593 3.3845 -0.7421 24 8 6.1668 2.3355 1.2007 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9329 0.9288 0.8908 33 1 3.9336 0.9286 -0.8892 34 1 3.5277 3.0093 -2.0452 35 1 4.0752 5.1949 0.7696 36 1 3.8587 7.6276 0.6927 37 1 5.3709 9.9449 0.7503 38 1 2.7770 7.3782 -3.4734 39 1 3.0105 4.9478 -3.3760 40 1 7.1328 2.3610 1.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300079487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:24 Heat of formation + Delta-G solvation = -87.150662 kcal Electronic energy + Delta-G solvation = -21226.763397 eV Core-core repulsion = 18005.365919 eV Total energy + Delta-G solvation = -3221.397478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.13049 -37.98844 -36.53508 -35.79585 -34.53817 -33.11571 -30.97741 -29.49663 -28.40918 -26.89438 -24.26266 -23.18064 -21.64867 -21.07574 -20.71847 -19.61920 -17.79129 -17.22168 -16.61063 -16.33226 -15.59963 -15.20024 -14.92706 -14.84448 -13.92499 -13.86072 -13.39583 -13.03900 -12.91748 -12.64335 -12.55681 -12.12125 -11.77317 -11.71746 -11.43789 -11.29955 -11.25948 -11.22850 -11.03543 -10.84418 -10.78382 -10.60603 -10.53090 -10.15543 -9.69374 -9.33605 -9.27194 -8.62137 -7.49838 -6.65868 -6.45316 -4.04708 2.53524 2.86399 3.10254 3.14859 3.16106 3.21411 3.45692 4.05530 4.14563 4.62065 4.76494 4.84235 4.91067 5.14360 5.17589 5.44098 5.47160 5.66423 5.72727 5.76646 5.79994 5.86132 5.89269 6.05370 6.19655 6.23471 6.29776 6.31945 6.75168 6.83820 6.90722 7.19130 7.34667 7.49452 7.67583 7.80392 8.13197 8.16818 8.27691 8.44449 8.60829 8.76896 9.05611 9.13560 10.37062 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.004206 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.060349 B = 6655.487290 C = 7345.291640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.118 4.118 5 C 0.178 3.822 6 H 0.112 0.888 7 N -0.728 5.728 8 C 0.089 3.911 9 C -0.160 4.160 10 C -0.125 4.125 11 C 0.078 3.922 12 C -0.466 4.466 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.805 5.805 16 Si 0.903 3.097 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.277 1.277 20 C -0.188 4.188 21 C -0.148 4.148 22 C 0.445 3.555 23 O -0.494 6.494 24 O -0.527 6.527 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.391 0.609 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.276 0.724 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -15.419 3.262 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.156 4.156 5 C 0.067 3.933 6 H 0.129 0.871 7 N -0.363 5.363 8 C -0.007 4.007 9 C -0.181 4.181 10 C -0.145 4.145 11 C 0.076 3.924 12 C -0.497 4.497 13 H 0.092 0.908 14 C -0.141 4.141 15 N -0.432 5.432 16 Si 0.728 3.272 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.203 1.203 20 C -0.208 4.208 21 C -0.170 4.170 22 C 0.284 3.716 23 O -0.379 6.379 24 O -0.338 6.338 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.225 0.775 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.389 -15.172 3.320 15.896 hybrid contribution 0.785 0.752 -0.106 1.092 sum -2.603 -14.420 3.214 15.002 Atomic orbital electron populations 1.21770 0.95899 1.01286 1.02084 1.21529 0.95901 0.96929 1.01774 1.21597 0.93852 0.96619 1.03399 1.21792 0.96903 0.93579 1.03340 1.20195 0.85511 0.95577 0.92027 0.87097 1.43635 1.78557 1.04350 1.09781 1.17251 1.06854 0.81621 0.94982 1.20031 1.08196 0.94760 0.95118 1.20901 1.03011 0.91981 0.98639 1.17506 0.91333 0.93268 0.90342 1.19416 1.24646 0.91278 1.14357 0.90811 1.25814 0.93266 1.00498 0.94532 1.69871 1.13889 1.37985 1.21485 0.86358 0.79601 0.82350 0.78903 1.18585 1.19949 1.20270 1.20543 1.10203 0.92658 0.97399 1.19773 1.07724 0.94863 0.94651 1.25243 0.93853 0.74018 0.78532 1.90731 1.65446 1.40938 1.40814 1.84571 1.28169 1.74959 1.46126 0.92627 0.93058 0.92671 0.92213 0.92149 0.90924 0.91496 0.89816 0.91377 0.77545 0.89980 0.86387 0.91337 0.88940 0.89451 0.74175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.15 0.37 -0.88 16 2 C -0.12 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.18 5.10 -26.73 -0.14 -1.31 16 4 C -0.12 -1.26 4.72 -26.73 -0.13 -1.38 16 5 C 0.18 2.60 2.18 -69.09 -0.15 2.45 16 6 H 0.11 1.67 6.44 -51.93 -0.33 1.33 16 7 N -0.73 -12.50 4.19 -53.16 -0.22 -12.72 16 8 C 0.09 1.94 6.55 -83.69 -0.55 1.39 16 9 C -0.16 -3.79 9.07 -39.77 -0.36 -4.15 16 10 C -0.13 -3.34 8.64 -39.27 -0.34 -3.68 16 11 C 0.08 2.14 5.57 -106.79 -0.60 1.55 16 12 C -0.47 -12.79 9.03 -37.88 -0.34 -13.13 16 13 H 0.07 1.95 7.91 -52.49 -0.41 1.54 16 14 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 15 N -0.81 -21.77 10.96 55.54 0.61 -21.16 16 16 Si 0.90 19.38 29.60 -169.99 -5.03 14.34 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 C -0.19 -4.71 9.74 -39.27 -0.38 -5.09 16 21 C -0.15 -3.37 9.82 -39.77 -0.39 -3.76 16 22 C 0.45 7.22 7.53 36.00 0.27 7.49 16 23 O -0.49 -10.21 17.11 -18.75 -0.32 -10.53 16 24 O -0.53 -6.60 13.23 -39.27 -0.52 -7.12 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.79 7.99 -51.93 -0.42 0.38 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.39 6.01 8.60 -40.82 -0.35 5.66 16 35 H 0.08 1.78 6.14 -52.49 -0.32 1.46 16 36 H 0.12 3.26 6.16 -52.49 -0.32 2.93 16 37 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 38 H 0.09 2.19 8.06 -52.48 -0.42 1.76 16 39 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.40 3.53 9.10 45.56 0.41 3.94 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -31.58 336.84 -8.48 -40.06 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.09 Total: 11.89 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -2.98 Total: -19.85 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.39 Total: -33.88 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.84 Total: -17.65 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.58 -8.48 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300079487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.090 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds