Wall clock time and date at job start Mon Mar 30 2020 07:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47170 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46998 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46855 * 55.00488 * 5 4 3 7 7 N 1.46499 * 109.47160 * 295.00364 * 5 4 3 8 8 C 1.38856 * 119.99767 * 155.00406 * 7 5 4 9 9 C 1.39567 * 119.84465 * 359.72043 * 8 7 5 10 10 C 1.36335 * 120.16179 * 179.71971 * 9 8 7 11 11 C 1.40885 * 119.83704 * 0.55830 * 10 9 8 12 12 C 1.41137 * 120.15831 * 179.69926 * 11 10 9 13 13 H 1.08001 * 120.00353 * 204.62652 * 12 11 10 14 14 C 1.39862 * 119.99909 * 24.62061 * 12 11 10 15 15 N 1.30898 * 120.00320 * 17.96626 * 14 12 11 16 16 Si 1.86800 * 119.99919 * 197.96895 * 14 12 11 17 17 H 1.48500 * 109.47537 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47467 * 119.99975 * 16 14 12 19 19 H 1.48500 * 109.47123 * 240.00135 * 16 14 12 20 20 C 1.40889 * 119.68611 * 359.71916 * 11 10 9 21 21 C 1.36328 * 119.83764 * 359.97438 * 20 11 10 22 22 C 1.50696 * 109.46934 * 175.00220 * 5 4 3 23 23 O 1.20827 * 120.00191 * 120.00371 * 22 5 4 24 24 O 1.34234 * 120.00195 * 300.00247 * 22 5 4 25 25 H 1.09003 * 109.47317 * 59.99972 * 1 2 3 26 26 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47212 * 299.99728 * 1 2 3 28 28 H 1.09000 * 109.47212 * 240.00272 * 2 1 3 29 29 H 1.09003 * 109.47317 * 120.00028 * 2 1 3 30 30 H 1.08993 * 109.47073 * 300.00084 * 3 2 1 31 31 H 1.09000 * 109.46867 * 60.00061 * 3 2 1 32 32 H 1.08994 * 109.46992 * 300.00473 * 4 3 2 33 33 H 1.09001 * 109.46534 * 60.00050 * 4 3 2 34 34 H 0.96999 * 120.00441 * 334.99955 * 7 5 4 35 35 H 1.07998 * 119.91575 * 359.97438 * 9 8 7 36 36 H 1.08000 * 120.08398 * 180.27938 * 10 9 8 37 37 H 0.97000 * 120.00833 * 179.97438 * 15 14 12 38 38 H 1.08005 * 120.07687 * 179.97438 * 20 11 10 39 39 H 1.08007 * 119.92025 * 179.97438 * 21 20 11 40 40 H 0.96696 * 116.99981 * 180.02562 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6450 3.4238 0.8431 7 7 3.6928 3.5404 -1.2504 8 6 3.5622 4.9220 -1.2992 9 6 3.7948 5.6825 -0.1523 10 6 3.6740 7.0399 -0.1944 11 6 3.3019 7.6736 -1.3964 12 6 3.1687 9.0778 -1.4459 13 1 2.5291 9.5338 -2.1871 14 6 3.8648 9.8788 -0.5349 15 7 4.8878 9.3893 0.1188 16 14 3.3348 11.6474 -0.2511 17 1 2.1599 11.9553 -1.1055 18 1 2.9698 11.8318 1.1765 19 1 4.4528 12.5610 -0.5981 20 6 3.0630 6.8989 -2.5487 21 6 3.1937 5.5430 -2.4936 22 6 5.5817 2.8868 0.1257 23 8 6.2593 3.3845 -0.7421 24 8 6.1668 2.3355 1.2007 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9329 0.9288 0.8908 33 1 3.9336 0.9286 -0.8892 34 1 3.5277 3.0093 -2.0452 35 1 4.0752 5.1949 0.7696 36 1 3.8587 7.6276 0.6927 37 1 5.3709 9.9449 0.7503 38 1 2.7770 7.3782 -3.4734 39 1 3.0105 4.9478 -3.3760 40 1 7.1328 2.3610 1.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300079487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:23 Heat of formation + Delta-G solvation = -106.137370 kcal Electronic energy + Delta-G solvation = -21227.586722 eV Core-core repulsion = 18005.365919 eV Total energy + Delta-G solvation = -3222.220803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43672 -39.68966 -37.77093 -37.01577 -35.94649 -34.70815 -32.31259 -31.39895 -29.99960 -28.09826 -26.10091 -24.10599 -23.29409 -22.47432 -21.81722 -21.14290 -19.19286 -19.03216 -18.11047 -17.63882 -16.93754 -16.58381 -16.45474 -16.03286 -15.61170 -14.76474 -14.70138 -14.56367 -14.12016 -14.11248 -13.92795 -13.62357 -13.43201 -13.32279 -12.76252 -12.69278 -12.60176 -12.41380 -12.31507 -12.14357 -12.02466 -11.77928 -11.60212 -11.47250 -11.34605 -11.19298 -11.05859 -10.40009 -9.42791 -8.57573 -8.26105 -6.04084 1.06456 1.16051 1.26156 1.39618 1.53367 1.55585 2.10547 2.26850 2.78331 2.84420 3.68574 3.83642 3.96502 4.10384 4.22955 4.41106 4.43453 4.47527 4.50231 4.59944 4.86474 4.90612 4.97823 5.02854 5.08153 5.11728 5.19872 5.25201 5.37112 5.42745 5.47258 5.58133 5.61544 5.66327 5.76898 5.91741 6.16471 6.34118 6.58872 6.79611 7.02188 7.06645 7.09439 7.22808 8.46792 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.004206 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.060349 B = 6655.487290 C = 7345.291640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.115 4.115 4 C -0.105 4.105 5 C 0.172 3.828 6 H 0.110 0.890 7 N -0.719 5.719 8 C 0.113 3.887 9 C -0.171 4.171 10 C -0.146 4.146 11 C 0.039 3.961 12 C -0.505 4.505 13 H 0.070 0.930 14 C 0.031 3.969 15 N -0.843 5.843 16 Si 0.979 3.021 17 H -0.259 1.259 18 H -0.266 1.266 19 H -0.270 1.270 20 C -0.196 4.196 21 C -0.158 4.158 22 C 0.452 3.548 23 O -0.545 6.545 24 O -0.511 6.511 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.403 0.597 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.282 0.718 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -17.335 3.656 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.152 4.152 4 C -0.143 4.143 5 C 0.062 3.938 6 H 0.127 0.873 7 N -0.354 5.354 8 C 0.014 3.986 9 C -0.193 4.193 10 C -0.166 4.166 11 C 0.036 3.964 12 C -0.536 4.536 13 H 0.088 0.912 14 C -0.181 4.181 15 N -0.471 5.471 16 Si 0.800 3.200 17 H -0.182 1.182 18 H -0.190 1.190 19 H -0.195 1.195 20 C -0.217 4.217 21 C -0.180 4.180 22 C 0.293 3.707 23 O -0.434 6.434 24 O -0.324 6.324 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.239 0.761 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -3.727 -17.161 3.733 17.953 hybrid contribution 0.932 1.089 -0.201 1.448 sum -2.795 -16.071 3.532 16.691 Atomic orbital electron populations 1.21784 0.95903 1.01877 1.01657 1.21496 0.95875 0.95710 1.02623 1.21569 0.93359 0.97736 1.02581 1.21770 0.97109 0.90622 1.04792 1.20490 0.84881 0.97873 0.90564 0.87278 1.43620 1.77738 1.02561 1.11481 1.17340 1.03567 0.83743 0.93908 1.20178 1.08474 0.94016 0.96640 1.20834 1.04594 0.93159 0.97983 1.17830 0.93193 0.93963 0.91416 1.19644 1.26008 0.92035 1.15896 0.91215 1.26655 0.92727 1.04946 0.93769 1.69939 1.14930 1.39888 1.22342 0.85219 0.79196 0.76571 0.79007 1.18234 1.19028 1.19485 1.20767 1.09952 0.93862 0.97073 1.20098 1.07292 0.94381 0.96185 1.25340 0.94225 0.72879 0.78295 1.90729 1.66597 1.43366 1.42740 1.84506 1.29994 1.73714 1.44147 0.93267 0.91990 0.92940 0.91563 0.91072 0.92200 0.91952 0.87857 0.90345 0.76143 0.88374 0.88366 0.90782 0.88340 0.86234 0.71907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.48 16 2 C -0.12 -1.65 5.93 30.59 0.18 -1.47 16 3 C -0.11 -2.01 5.10 30.60 0.16 -1.85 16 4 C -0.11 -1.89 4.72 30.59 0.14 -1.75 16 5 C 0.17 4.63 2.18 44.24 0.10 4.73 16 6 H 0.11 3.06 6.44 -2.39 -0.02 3.05 16 7 N -0.72 -23.28 4.19 -322.10 -1.35 -24.63 16 8 C 0.11 4.84 6.55 38.67 0.25 5.09 16 9 C -0.17 -8.19 9.07 22.15 0.20 -7.99 16 10 C -0.15 -8.04 8.64 22.47 0.19 -7.84 16 11 C 0.04 2.20 5.57 -21.27 -0.12 2.08 16 12 C -0.50 -28.82 9.03 23.38 0.21 -28.61 16 13 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 14 C 0.03 1.65 5.13 85.23 0.44 2.09 16 15 N -0.84 -47.18 10.96 21.81 0.24 -46.94 16 16 Si 0.98 40.66 29.60 68.60 2.03 42.69 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 C -0.20 -10.01 9.74 22.47 0.22 -9.79 16 21 C -0.16 -7.03 9.82 22.15 0.22 -6.81 16 22 C 0.45 13.73 7.53 71.23 0.54 14.27 16 23 O -0.55 -21.89 17.11 21.96 0.38 -21.52 16 24 O -0.51 -11.36 13.23 -51.45 -0.68 -12.04 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.53 7.99 -2.39 -0.02 1.51 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.40 11.33 8.60 -92.71 -0.80 10.53 16 35 H 0.10 4.25 6.14 -2.91 -0.02 4.23 16 36 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 37 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 38 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 40 H 0.42 6.24 9.10 -74.06 -0.67 5.56 16 Total: -1.00 -70.47 336.84 3.64 -66.83 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.41 Total: 34.94 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 3.44 Total: -39.34 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.11 Total: -71.56 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.31 Total: -33.56 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -70.47 3.64 -66.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300079487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.311 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds