Wall clock time and date at job start Mon Mar 30 2020 07:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 C 1.50697 * 109.47122 * 179.97438 * 3 2 1 5 5 O 1.33646 * 125.80392 * 270.14285 * 4 3 2 6 6 C 1.34224 * 110.90902 * 180.26980 * 5 4 3 7 7 C 1.34172 * 109.12126 * 359.75873 * 6 5 4 8 8 C 1.36420 * 125.79933 * 90.00568 * 4 3 2 9 9 C 1.47383 * 127.19295 * 0.02562 * 8 4 3 10 10 O 1.21616 * 119.99897 * 4.73804 * 9 8 4 11 11 N 1.34773 * 120.00170 * 184.74217 * 9 8 4 12 12 C 1.46498 * 119.99967 * 185.03281 * 11 9 8 13 13 C 1.53003 * 109.47207 * 184.98959 * 12 11 9 14 14 C 1.50707 * 115.54459 * 54.24047 * 13 12 11 15 15 H 1.07997 * 119.99897 * 215.58898 * 14 13 12 16 16 C 1.37871 * 119.99967 * 35.32364 * 14 13 12 17 17 N 1.31513 * 120.00342 * 355.77421 * 16 14 13 18 18 Si 1.86804 * 120.00030 * 175.77538 * 16 14 13 19 19 H 1.48502 * 109.46770 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47213 * 119.99605 * 18 16 14 21 21 H 1.48497 * 109.47169 * 239.99918 * 18 16 14 22 22 C 1.52990 * 117.50056 * 199.91177 * 13 12 11 23 23 C 1.53000 * 117.50087 * 268.57397 * 13 12 11 24 24 H 1.09003 * 109.46982 * 300.00033 * 1 2 3 25 25 H 1.09003 * 109.47301 * 60.00004 * 1 2 3 26 26 H 1.08998 * 109.47163 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46893 * 240.00422 * 2 1 3 28 28 H 1.09003 * 109.47301 * 119.99996 * 2 1 3 29 29 H 1.09003 * 109.47218 * 60.00111 * 3 2 1 30 30 H 1.09003 * 109.47027 * 300.00164 * 3 2 1 31 31 H 1.07994 * 125.43775 * 179.76282 * 6 5 4 32 32 H 1.08004 * 127.02169 * 179.97438 * 7 6 5 33 33 H 0.96997 * 119.99763 * 5.02418 * 11 9 8 34 34 H 1.09003 * 109.46997 * 64.99040 * 12 11 9 35 35 H 1.08998 * 109.46976 * 304.98664 * 12 11 9 36 36 H 0.96999 * 120.00365 * 184.99855 * 17 16 14 37 37 H 1.09004 * 117.50172 * 215.00488 * 22 13 12 38 38 H 1.08998 * 117.50002 * 0.02562 * 22 13 12 39 39 H 1.08995 * 117.49541 * 359.97438 * 23 13 12 40 40 H 1.09001 * 117.49616 * 144.96951 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.3284 1.4400 1.0849 6 6 5.6256 1.4467 0.7404 7 6 5.7251 1.4486 -0.5976 8 6 4.3454 1.4425 -1.1055 9 6 3.9149 1.4429 -2.5150 10 8 2.7335 1.5304 -2.7900 11 7 4.8305 1.3463 -3.4993 12 6 4.4149 1.4575 -4.8997 13 6 5.6149 1.1902 -5.8106 14 6 6.3356 -0.1114 -5.5707 15 1 7.4081 -0.1640 -5.6862 16 6 5.6265 -1.2337 -5.1984 17 7 4.3338 -1.1496 -4.9718 18 14 6.5019 -2.8738 -5.0159 19 1 7.9441 -2.7022 -5.3257 20 1 6.3494 -3.3639 -3.6225 21 1 5.9082 -3.8590 -5.9550 22 6 5.5352 1.6986 -7.2513 23 6 6.4547 2.3934 -6.2440 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.4566 1.4500 1.4301 32 1 6.6332 1.4540 -1.1822 33 1 5.7645 1.2033 -3.2805 34 1 4.0332 2.4612 -5.0868 35 1 3.6326 0.7269 -5.1056 36 1 3.8483 -1.9210 -4.6402 37 1 6.0042 1.0916 -8.0259 38 1 4.6282 2.2238 -7.5503 39 1 6.1522 3.3754 -5.8805 40 1 7.5287 2.2436 -6.3552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337182870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:17 Heat of formation + Delta-G solvation = -28.984364 kcal Electronic energy + Delta-G solvation = -21902.725332 eV Core-core repulsion = 18683.850134 eV Total energy + Delta-G solvation = -3218.875198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.47890 -40.19447 -38.41026 -36.14647 -34.75528 -34.14940 -33.54583 -31.21407 -28.32141 -27.53994 -26.78362 -23.95052 -22.96421 -22.72388 -21.74751 -21.13540 -20.45185 -18.88986 -18.04304 -17.13551 -16.77205 -16.69545 -16.49030 -15.96012 -15.69194 -15.62845 -15.08258 -14.65524 -14.36739 -13.99318 -13.90137 -13.65590 -13.53428 -13.36618 -12.95227 -12.84127 -12.55896 -12.37394 -12.29075 -12.19406 -12.03921 -11.64498 -11.53065 -10.94322 -10.75198 -10.74414 -10.63655 -10.15213 -9.68070 -9.40282 -7.93345 -6.19761 0.44916 1.20887 1.38424 1.43828 1.52481 1.89528 2.39992 2.51850 2.69078 3.09713 3.61436 3.64380 3.94322 4.01948 4.06112 4.12477 4.27884 4.35170 4.52697 4.56578 4.72825 4.74856 4.75769 4.81230 4.87870 4.92636 4.95834 5.01577 5.14134 5.24674 5.26614 5.33042 5.38261 5.44127 5.53119 5.60699 5.93361 5.99974 6.11170 6.37162 6.79217 7.02331 7.45414 7.58295 8.91751 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.005719 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.245893 B = 4895.027743 C = 5078.963922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.043 4.043 4 C 0.062 3.938 5 O -0.177 6.177 6 C -0.025 4.025 7 C -0.207 4.207 8 C -0.260 4.260 9 C 0.571 3.429 10 O -0.593 6.593 11 N -0.671 5.671 12 C 0.178 3.822 13 C 0.004 3.996 14 C -0.501 4.501 15 H 0.059 0.941 16 C 0.034 3.966 17 N -0.887 5.887 18 Si 0.947 3.053 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.288 1.288 22 C -0.199 4.199 23 C -0.185 4.185 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.255 0.745 32 H 0.167 0.833 33 H 0.400 0.600 34 H 0.015 0.985 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 4.507 12.774 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.080 4.080 4 C 0.009 3.991 5 O -0.073 6.073 6 C -0.090 4.090 7 C -0.226 4.226 8 C -0.265 4.265 9 C 0.359 3.641 10 O -0.477 6.477 11 N -0.317 5.317 12 C 0.054 3.946 13 C 0.004 3.996 14 C -0.539 4.539 15 H 0.077 0.923 16 C -0.168 4.168 17 N -0.524 5.524 18 Si 0.774 3.226 19 H -0.188 1.188 20 H -0.212 1.212 21 H -0.214 1.214 22 C -0.237 4.237 23 C -0.222 4.222 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.271 0.729 32 H 0.185 0.815 33 H 0.235 0.765 34 H 0.034 0.966 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.619 4.447 12.817 13.581 hybrid contribution 1.005 -1.078 -0.624 1.600 sum 0.386 3.370 12.194 12.657 Atomic orbital electron populations 1.21697 0.93399 1.02479 1.02467 1.21395 0.97686 0.94650 1.01238 1.20452 0.82947 0.99456 1.05114 1.22964 0.94446 0.98632 0.83107 1.83745 1.17832 1.71414 1.34294 1.24657 0.83616 1.04387 0.96290 1.23150 0.96140 1.07582 0.95708 1.21431 0.95313 1.16312 0.93424 1.17576 0.85265 0.76455 0.84763 1.90629 1.18066 1.54226 1.84771 1.45329 1.10504 1.69916 1.05905 1.20733 0.97933 0.96499 0.79459 1.19308 0.95008 0.92902 0.92416 1.20693 0.93095 0.92618 1.47482 0.92325 1.25597 0.95170 1.01393 0.94599 1.70064 1.07953 1.30232 1.44155 0.85666 0.79170 0.80554 0.77194 1.18840 1.21191 1.21421 1.22957 1.00850 1.05021 0.94892 1.22937 0.97038 0.96648 1.05581 0.90390 0.93413 0.91860 0.94881 0.90899 0.87417 0.88983 0.72909 0.81521 0.76511 0.96649 0.90145 0.93591 0.90376 0.90597 0.89769 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.11 -3.18 5.92 30.59 0.18 -3.00 16 3 C -0.04 -1.24 5.27 29.85 0.16 -1.09 16 4 C 0.06 2.00 6.63 25.26 0.17 2.17 16 5 O -0.18 -4.78 10.52 4.44 0.05 -4.74 16 6 C -0.02 -0.55 12.03 66.89 0.80 0.25 16 7 C -0.21 -6.02 10.61 23.65 0.25 -5.77 16 8 C -0.26 -9.69 6.31 -18.99 -0.12 -9.81 16 9 C 0.57 25.91 7.81 86.65 0.68 26.59 16 10 O -0.59 -30.00 14.80 -4.08 -0.06 -30.06 16 11 N -0.67 -30.52 5.02 -466.41 -2.34 -32.86 16 12 C 0.18 8.74 4.62 86.38 0.40 9.14 16 13 C 0.00 0.20 2.04 -52.93 -0.11 0.10 16 14 C -0.50 -25.51 8.44 25.60 0.22 -25.30 16 15 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 16 C 0.03 1.77 5.31 84.65 0.45 2.22 16 17 N -0.89 -49.24 10.11 21.44 0.22 -49.02 16 18 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 C -0.20 -8.54 9.96 30.61 0.30 -8.24 16 23 C -0.18 -7.38 9.92 30.62 0.30 -7.08 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.09 3.15 6.40 -2.39 -0.02 3.14 16 31 H 0.26 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.17 4.33 7.78 -2.91 -0.02 4.30 16 33 H 0.40 17.21 7.34 -92.71 -0.68 16.53 16 34 H 0.02 0.74 8.09 -2.39 -0.02 0.72 16 35 H 0.08 4.61 5.89 -2.39 -0.01 4.60 16 36 H 0.25 14.01 8.32 -92.71 -0.77 13.24 16 37 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 38 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -64.23 337.19 4.64 -59.59 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.36 Total: 35.40 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.40 Total: -22.40 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.12 Total: -81.88 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.01 Total: -34.80 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -64.23 4.64 -59.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337182870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.604 kcal (2) G-P(sol) polarization free energy of solvation -64.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds