Wall clock time and date at job start Mon Mar 30 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47174 * 269.99429 * 3 2 1 5 5 H 1.48503 * 109.47335 * 29.99987 * 3 2 1 6 6 H 1.48506 * 109.46986 * 149.99699 * 3 2 1 7 7 C 1.37878 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99607 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47053 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.47051 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46933 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99865 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46943 * 179.97438 * 14 13 12 16 16 C 1.38247 * 119.92634 * 270.01587 * 15 14 13 17 17 C 1.38240 * 120.14459 * 179.75199 * 16 15 14 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.92969 * 89.99999 * 15 14 13 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 0.96997 * 119.99584 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47462 * 59.99741 * 9 7 2 26 26 H 1.09000 * 109.46793 * 299.99233 * 9 7 2 27 27 H 1.08999 * 109.47674 * 59.99412 * 10 9 7 28 28 H 1.09006 * 109.46901 * 299.99927 * 10 9 7 29 29 H 1.08999 * 109.47725 * 59.99749 * 11 10 9 30 30 H 1.09002 * 109.47321 * 299.99373 * 11 10 9 31 31 H 1.08994 * 109.47007 * 59.99936 * 12 11 10 32 32 H 1.09000 * 109.47068 * 299.99538 * 12 11 10 33 33 H 1.00904 * 111.00267 * 56.04534 * 13 12 11 34 34 H 1.08993 * 109.47082 * 59.99876 * 14 13 12 35 35 H 1.08998 * 109.46415 * 299.99790 * 14 13 12 36 36 H 1.07994 * 119.93290 * 0.02562 * 16 15 14 37 37 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 38 38 H 1.08003 * 119.98943 * 0.02562 * 20 15 14 39 39 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 40 40 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0025 12 6 2.4745 -6.1500 0.0031 13 7 1.7399 -7.4222 0.0031 14 6 2.6644 -8.5639 0.0043 15 6 1.8763 -9.8484 0.0049 16 6 1.5148 -10.4352 1.2034 17 6 0.7875 -11.6108 1.2092 18 6 0.4265 -12.2086 0.0125 19 6 0.7907 -11.6175 -1.1947 20 6 1.5161 -10.4371 -1.1928 21 8 0.3178 -12.3875 -2.2177 22 6 0.0151 -13.6659 -1.6285 23 8 -0.2746 -13.3491 -0.2541 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8713 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8878 29 1 0.8539 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 3.1011 -6.0918 0.8931 32 1 3.1011 -6.0928 -0.8869 33 1 1.1038 -7.4725 -0.7785 34 1 3.2917 -8.5225 0.8947 35 1 3.2930 -8.5232 -0.8852 36 1 1.7975 -9.9719 2.1371 37 1 0.5018 -12.0642 2.1468 38 1 1.8000 -9.9766 -2.1275 39 1 0.8757 -14.3316 -1.6950 40 1 -0.8545 -14.1133 -2.1099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385209759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:36 Heat of formation + Delta-G solvation = -55.930075 kcal Electronic energy + Delta-G solvation = -19896.264540 eV Core-core repulsion = 16676.220888 eV Total energy + Delta-G solvation = -3220.043652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.44909 -38.73206 -36.60372 -36.44740 -34.18436 -32.37460 -30.97379 -30.52126 -28.22644 -26.39392 -25.23192 -23.74737 -23.24854 -21.90568 -21.38631 -19.97949 -18.22957 -17.89291 -17.68630 -16.52729 -16.17933 -15.75713 -14.93235 -14.81790 -14.73224 -14.46897 -14.35392 -14.15670 -13.58439 -13.29467 -13.15308 -13.04535 -12.40830 -12.23132 -12.04186 -11.57181 -11.53801 -11.25269 -11.09477 -10.97682 -10.54494 -10.47977 -10.40801 -9.60887 -9.25643 -9.16014 -8.98420 -8.46734 -8.30864 -8.27930 -5.95852 -3.98059 0.82695 0.93764 2.43781 3.10620 3.24775 3.33993 3.40041 3.43505 4.17690 4.27830 4.30922 4.48657 4.51242 4.61352 4.75158 4.87310 4.95651 5.14451 5.29459 5.35912 5.39636 5.49684 5.55698 5.73963 5.78618 5.91126 5.92965 6.10755 6.16525 6.24513 6.26359 6.52819 6.81609 6.84303 6.95915 7.02530 7.23715 7.36549 7.73330 7.89297 8.05429 8.48040 9.09569 9.65653 11.15490 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045830 B = 0.002147 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.801973 B =13039.743304 C =13170.700509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.687 5.687 14 C 0.100 3.900 15 C -0.069 4.069 16 C -0.086 4.086 17 C -0.100 4.100 18 C 0.027 3.973 19 C 0.029 3.971 20 C -0.094 4.094 21 O -0.310 6.310 22 C 0.213 3.787 23 O -0.311 6.311 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.342 0.658 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.083 0.917 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 -28.615 -1.085 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.318 5.318 14 C -0.029 4.029 15 C -0.070 4.070 16 C -0.104 4.104 17 C -0.119 4.119 18 C -0.017 4.017 19 C -0.015 4.015 20 C -0.113 4.113 21 O -0.226 6.226 22 C 0.102 3.898 23 O -0.227 6.227 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.160 0.840 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.100 0.900 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.918 -28.593 -0.503 28.746 hybrid contribution 0.590 0.705 -1.129 1.456 sum 3.508 -27.888 -1.633 28.155 Atomic orbital electron populations 1.69971 1.06040 1.26505 1.51031 1.25044 0.94858 0.99247 0.95467 0.86606 0.79847 0.83566 0.78043 1.20725 1.21245 1.19908 1.21290 0.93007 0.91217 1.50291 0.92771 1.19096 0.94044 0.91349 0.97174 1.21589 0.99077 0.93943 1.00080 1.21642 0.97881 0.93777 1.02085 1.22108 0.96275 0.88278 1.00275 1.60561 1.19596 1.01248 1.50354 1.20843 0.93292 0.86975 1.01761 1.19569 0.99275 0.96316 0.91791 1.20857 0.97364 0.93696 0.98509 1.20106 1.00058 0.96598 0.95112 1.19836 0.97279 0.89495 0.95119 1.19724 1.00180 0.96285 0.85293 1.19966 0.98567 0.93572 0.99240 1.87368 1.79817 1.23827 1.31618 1.25609 1.01885 0.85868 0.76483 1.87359 1.65356 1.40582 1.29424 0.93056 0.96740 0.96586 0.93414 0.93680 0.92735 0.91576 0.91076 0.95425 0.84029 0.89656 0.94178 0.84098 0.84653 0.84913 0.89984 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.12 -1.96 5.47 -26.73 -0.15 -2.11 16 12 C 0.06 0.80 5.69 -3.82 -0.02 0.78 16 13 N -0.69 -8.20 6.49 -115.06 -0.75 -8.95 16 14 C 0.10 0.96 5.81 -4.97 -0.03 0.94 16 15 C -0.07 -0.67 5.39 -104.62 -0.56 -1.23 16 16 C -0.09 -0.78 9.69 -39.58 -0.38 -1.16 16 17 C -0.10 -0.93 10.06 -39.46 -0.40 -1.33 16 18 C 0.03 0.29 7.15 -39.08 -0.28 0.01 16 19 C 0.03 0.32 7.15 -39.08 -0.28 0.04 16 20 C -0.09 -0.95 9.71 -39.47 -0.38 -1.33 16 21 O -0.31 -3.26 11.40 -45.68 -0.52 -3.78 16 22 C 0.21 1.55 8.89 101.05 0.90 2.45 16 23 O -0.31 -3.17 11.40 -45.70 -0.52 -3.69 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.34 4.01 8.72 -39.29 -0.34 3.66 16 34 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -32.52 339.68 -9.45 -41.96 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.22 Total: -2.16 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -2.27 Total: -18.72 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.01 Total: -35.63 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -1.04 Total: -7.48 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.52 -9.45 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385209759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.967 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds