Wall clock time and date at job start Mon Mar 30 2020 07:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47174 * 269.99429 * 3 2 1 5 5 H 1.48503 * 109.47335 * 29.99987 * 3 2 1 6 6 H 1.48506 * 109.46986 * 149.99699 * 3 2 1 7 7 C 1.37878 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99607 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47053 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.47051 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46933 * 180.02562 * 12 11 10 14 14 C 1.46904 * 110.99865 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46943 * 179.97438 * 14 13 12 16 16 C 1.38247 * 119.92634 * 270.01587 * 15 14 13 17 17 C 1.38240 * 120.14459 * 179.75199 * 16 15 14 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.92969 * 89.99999 * 15 14 13 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 0.96997 * 119.99584 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47462 * 59.99741 * 9 7 2 26 26 H 1.09000 * 109.46793 * 299.99233 * 9 7 2 27 27 H 1.08999 * 109.47674 * 59.99412 * 10 9 7 28 28 H 1.09006 * 109.46901 * 299.99927 * 10 9 7 29 29 H 1.08999 * 109.47725 * 59.99749 * 11 10 9 30 30 H 1.09002 * 109.47321 * 299.99373 * 11 10 9 31 31 H 1.08994 * 109.47007 * 59.99936 * 12 11 10 32 32 H 1.09000 * 109.47068 * 299.99538 * 12 11 10 33 33 H 1.00904 * 111.00267 * 56.04534 * 13 12 11 34 34 H 1.08993 * 109.47082 * 59.99876 * 14 13 12 35 35 H 1.08998 * 109.46415 * 299.99790 * 14 13 12 36 36 H 1.07994 * 119.93290 * 0.02562 * 16 15 14 37 37 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 38 38 H 1.08003 * 119.98943 * 0.02562 * 20 15 14 39 39 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 40 40 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0025 12 6 2.4745 -6.1500 0.0031 13 7 1.7399 -7.4222 0.0031 14 6 2.6644 -8.5639 0.0043 15 6 1.8763 -9.8484 0.0049 16 6 1.5148 -10.4352 1.2034 17 6 0.7875 -11.6108 1.2092 18 6 0.4265 -12.2086 0.0125 19 6 0.7907 -11.6175 -1.1947 20 6 1.5161 -10.4371 -1.1928 21 8 0.3178 -12.3875 -2.2177 22 6 0.0151 -13.6659 -1.6285 23 8 -0.2746 -13.3491 -0.2541 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8713 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8878 29 1 0.8539 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 3.1011 -6.0918 0.8931 32 1 3.1011 -6.0928 -0.8869 33 1 1.1038 -7.4725 -0.7785 34 1 3.2917 -8.5225 0.8947 35 1 3.2930 -8.5232 -0.8852 36 1 1.7975 -9.9719 2.1371 37 1 0.5018 -12.0642 2.1468 38 1 1.8000 -9.9766 -2.1275 39 1 0.8757 -14.3316 -1.6950 40 1 -0.8545 -14.1133 -2.1099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385209759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:35 Heat of formation + Delta-G solvation = -76.544213 kcal Electronic energy + Delta-G solvation = -19897.158436 eV Core-core repulsion = 16676.220888 eV Total energy + Delta-G solvation = -3220.937548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.13308 -39.47526 -37.60378 -37.29679 -35.84346 -34.12958 -32.00333 -31.34876 -29.70575 -27.28120 -26.38961 -25.10552 -23.97106 -22.85965 -22.66486 -21.65495 -18.91617 -18.65717 -18.37370 -18.35998 -17.17591 -16.83042 -16.52315 -15.76099 -15.68017 -15.60468 -15.46199 -14.86653 -14.60518 -14.43401 -14.07602 -13.99235 -13.79603 -13.55350 -13.46801 -12.90329 -12.81899 -12.68085 -12.32034 -12.15785 -12.08900 -11.99479 -11.75631 -11.33757 -11.28239 -10.97310 -10.54201 -9.89136 -9.35580 -9.03294 -8.18652 -6.30098 0.08414 0.21596 1.40401 1.42200 1.53365 1.78648 2.41791 2.48695 2.52518 3.13991 3.38445 3.47579 3.79327 3.81717 4.02863 4.07263 4.17700 4.23859 4.26786 4.29605 4.48313 4.58790 4.64060 4.68965 4.77341 4.88655 4.97287 5.03155 5.07464 5.22483 5.28448 5.30455 5.39595 5.43598 5.54623 5.57852 5.80678 5.88995 6.06965 6.12982 6.27308 6.43181 6.87991 7.39182 8.93230 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045830 B = 0.002147 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.801973 B =13039.743304 C =13170.700509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.107 4.107 12 C 0.072 3.928 13 N -0.694 5.694 14 C 0.104 3.896 15 C -0.073 4.073 16 C -0.085 4.085 17 C -0.104 4.104 18 C 0.012 3.988 19 C 0.010 3.990 20 C -0.101 4.101 21 O -0.329 6.329 22 C 0.205 3.795 23 O -0.326 6.326 24 H 0.263 0.737 25 H -0.012 1.012 26 H -0.012 1.012 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.342 0.658 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.140 0.860 39 H 0.104 0.896 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -29.114 -0.884 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.145 4.145 12 C -0.057 4.057 13 N -0.325 5.325 14 C -0.024 4.024 15 C -0.074 4.074 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.033 4.033 19 C -0.034 4.034 20 C -0.120 4.120 21 O -0.246 6.246 22 C 0.094 3.906 23 O -0.243 6.243 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.160 0.840 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.122 0.878 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.457 -29.118 -0.306 29.459 hybrid contribution 0.060 0.792 -1.202 1.441 sum 4.516 -28.325 -1.508 28.723 Atomic orbital electron populations 1.70112 1.07881 1.27730 1.51852 1.26050 0.95820 1.03566 0.94835 0.85419 0.78671 0.78282 0.78502 1.19745 1.20792 1.18587 1.21758 0.93613 0.92490 1.50257 0.92058 1.19040 0.94587 0.93438 0.94534 1.21394 0.97925 0.93570 1.00584 1.21472 0.98145 0.93510 1.01369 1.21871 0.95180 0.87607 1.01054 1.60507 1.20097 1.01284 1.50591 1.20864 0.92933 0.85844 1.02783 1.19618 0.99452 0.96380 0.91902 1.21111 0.96737 0.93482 0.99039 1.20390 0.99721 0.96626 0.95508 1.20122 0.97667 0.89888 0.95592 1.19958 1.00880 0.96868 0.85670 1.20135 0.98546 0.93492 0.99847 1.87326 1.79984 1.25044 1.32197 1.26091 1.04164 0.84990 0.75352 1.87321 1.65597 1.40483 1.30902 0.92821 0.99376 0.99311 0.92850 0.93037 0.93161 0.92683 0.90368 0.94553 0.84017 0.88531 0.93207 0.82392 0.82906 0.84239 0.87826 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.94 5.15 30.59 0.16 -3.78 16 11 C -0.11 -3.56 5.47 30.60 0.17 -3.39 16 12 C 0.07 1.79 5.69 86.31 0.49 2.28 16 13 N -0.69 -15.34 6.49 -517.93 -3.36 -18.70 16 14 C 0.10 1.78 5.81 85.56 0.50 2.27 16 15 C -0.07 -1.30 5.39 -19.86 -0.11 -1.41 16 16 C -0.09 -1.40 9.69 22.27 0.22 -1.19 16 17 C -0.10 -1.81 10.06 22.35 0.22 -1.59 16 18 C 0.01 0.24 7.15 22.59 0.16 0.41 16 19 C 0.01 0.22 7.15 22.59 0.16 0.39 16 20 C -0.10 -1.96 9.71 22.34 0.22 -1.75 16 21 O -0.33 -6.80 11.40 -76.01 -0.87 -7.67 16 22 C 0.20 2.76 8.89 113.37 1.01 3.77 16 23 O -0.33 -6.45 11.40 -76.10 -0.87 -7.32 16 24 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 25 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 26 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.34 7.58 8.72 -89.69 -0.78 6.80 16 34 H 0.10 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.05 0.78 8.08 -2.39 -0.02 0.76 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 39 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.16 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.30 339.68 1.50 -68.81 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.24 Total: 9.79 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 4.04 Total: -33.84 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -3.08 Total: -76.60 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -1.73 Total: -14.98 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.30 1.50 -68.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385209759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.737 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds