Wall clock time and date at job start Mon Mar 30 2020 07:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37993 * 119.96427 * 2 1 4 4 C 1.38580 * 120.43211 * 179.72648 * 3 2 1 5 5 C 1.37759 * 120.36590 * 0.25048 * 4 3 2 6 6 C 1.39766 * 119.92085 * 0.02562 * 5 4 3 7 7 C 1.47289 * 120.21347 * 179.97438 * 6 5 4 8 8 O 1.21528 * 119.99755 * 185.93295 * 7 6 5 9 9 O 1.34757 * 120.00296 * 5.92683 * 7 6 5 10 10 C 1.45202 * 117.00139 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47300 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47202 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47202 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47109 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99809 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00243 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99809 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47069 * 90.00005 * 18 16 14 20 20 H 1.48498 * 109.46690 * 209.99789 * 18 16 14 21 21 H 1.48495 * 109.47090 * 329.99729 * 18 16 14 22 22 C 1.38926 * 119.96535 * 180.27076 * 2 1 3 23 23 N 1.38829 * 120.17827 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47176 * 90.00362 * 1 2 3 25 25 H 1.09004 * 109.46924 * 210.00413 * 1 2 3 26 26 H 1.08996 * 109.47267 * 329.99796 * 1 2 3 27 27 H 1.07995 * 119.78342 * 359.97438 * 3 2 1 28 28 H 1.08008 * 119.81687 * 180.27768 * 4 3 2 29 29 H 1.08003 * 120.04221 * 180.02562 * 5 4 3 30 30 H 1.09008 * 109.47080 * 300.00340 * 10 9 7 31 31 H 1.08999 * 109.47465 * 59.99963 * 10 9 7 32 32 H 1.08995 * 109.46710 * 299.99972 * 11 10 9 33 33 H 1.09002 * 109.46758 * 59.99899 * 11 10 9 34 34 H 1.09008 * 109.47045 * 299.99774 * 12 11 10 35 35 H 1.08995 * 109.47129 * 59.99393 * 12 11 10 36 36 H 1.08995 * 109.46710 * 299.99870 * 13 12 11 37 37 H 1.09002 * 109.46758 * 59.99797 * 13 12 11 38 38 H 0.96999 * 120.00213 * 179.97438 * 17 16 14 39 39 H 0.97009 * 119.99588 * 204.29752 * 23 22 2 40 40 H 0.97001 * 120.00831 * 24.29250 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1955 0.0000 4 6 3.5820 1.2068 0.0057 5 6 4.2881 0.0239 0.0062 6 6 3.6053 -1.1956 0.0005 7 6 4.3538 -2.4641 0.0005 8 8 3.7614 -3.5191 -0.1133 9 8 5.6954 -2.4549 0.1265 10 6 6.3672 -3.7422 0.1177 11 6 7.8749 -3.5317 0.2711 12 6 8.5828 -4.8880 0.2611 13 6 10.0905 -4.6776 0.4152 14 6 10.7877 -6.0136 0.4060 15 1 10.2130 -6.9219 0.3005 16 6 12.1593 -6.0762 0.5314 17 7 12.8592 -4.9701 0.6585 18 14 13.0236 -7.7322 0.5193 19 1 13.3834 -8.0927 -0.8756 20 1 14.2561 -7.6532 1.3438 21 1 12.1183 -8.7671 1.0802 22 6 2.2009 -1.2035 -0.0057 23 7 1.5098 -2.4076 -0.0108 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6522 2.1284 -0.0004 28 1 4.1114 2.1483 0.0102 29 1 5.3680 0.0389 0.0111 30 1 5.9994 -4.3496 0.9447 31 1 6.1651 -4.2511 -0.8248 32 1 8.2428 -2.9242 -0.5557 33 1 8.0766 -3.0230 1.2138 34 1 8.2149 -5.4960 1.0878 35 1 8.3809 -5.3963 -0.6816 36 1 10.4587 -4.0695 -0.4110 37 1 10.2919 -4.1694 1.3583 38 1 13.8241 -5.0142 0.7470 39 1 1.9326 -3.2109 0.3311 40 1 0.6042 -2.4456 -0.3562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385403524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:20 Heat of formation + Delta-G solvation = -104.463832 kcal Electronic energy + Delta-G solvation = -20218.052348 eV Core-core repulsion = 16995.904115 eV Total energy + Delta-G solvation = -3222.148233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75337 -40.11154 -37.87205 -36.47435 -35.49350 -34.42814 -33.59926 -30.99815 -30.11936 -27.66069 -27.03377 -25.17684 -23.43262 -22.31595 -22.10089 -21.59251 -18.62110 -18.44831 -18.13547 -17.91805 -17.63656 -17.45808 -16.51883 -16.08335 -15.46936 -15.39553 -14.86821 -14.67724 -14.52418 -14.35199 -14.13183 -13.69769 -13.31455 -13.14523 -13.08782 -12.96183 -12.67758 -12.63114 -12.40997 -12.24608 -12.13096 -11.72500 -11.68299 -11.40107 -11.38681 -11.28508 -11.07026 -10.55837 -9.82987 -8.59972 -8.20601 -6.31773 -0.21083 0.57292 1.39776 1.41260 1.51043 1.52345 1.62876 2.40849 2.83850 2.95797 3.12464 3.60604 3.84187 3.91617 3.94588 4.08395 4.27868 4.35906 4.40528 4.48426 4.48822 4.67641 4.75488 4.76895 4.86551 4.94552 5.07400 5.17654 5.20011 5.23599 5.30258 5.38548 5.48589 5.52056 5.59873 5.73334 5.84892 5.91791 6.23847 6.45413 6.70447 6.85179 6.88881 7.37399 8.91306 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046445 B = 0.002466 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.716087 B =11349.802709 C =11910.694790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.180 4.180 3 C -0.035 4.035 4 C -0.185 4.185 5 C -0.035 4.035 6 C -0.234 4.234 7 C 0.510 3.490 8 O -0.543 6.543 9 O -0.356 6.356 10 C 0.077 3.923 11 C -0.106 4.106 12 C -0.096 4.096 13 C 0.023 3.977 14 C -0.545 4.545 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.264 1.264 22 C 0.265 3.735 23 N -0.857 5.857 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.151 0.849 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.056 0.944 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.264 0.736 39 H 0.406 0.594 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.873 13.479 -1.455 30.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C -0.054 4.054 4 C -0.205 4.205 5 C -0.054 4.054 6 C -0.241 4.241 7 C 0.360 3.640 8 O -0.436 6.436 9 O -0.273 6.273 10 C 0.004 3.996 11 C -0.144 4.144 12 C -0.133 4.133 13 C -0.014 4.014 14 C -0.583 4.583 15 H 0.079 0.921 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.188 1.188 22 C 0.154 3.846 23 N -0.402 5.402 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.177 0.823 28 H 0.169 0.831 29 H 0.152 0.848 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.241 0.759 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -26.815 13.181 -1.454 29.915 hybrid contribution 0.925 -1.379 -0.001 1.661 sum -25.890 11.802 -1.455 28.490 Atomic orbital electron populations 1.20676 0.88600 1.03824 1.02996 1.19849 0.97729 0.90861 1.10021 1.21494 0.94089 0.98008 0.91807 1.21217 0.94631 0.98160 1.06472 1.21416 1.00689 0.91028 0.92220 1.18822 0.91940 0.91099 1.22208 1.21468 0.80879 0.89785 0.71916 1.90590 1.69585 1.34376 1.49066 1.86536 1.20903 1.36599 1.83224 1.23129 0.92100 0.81812 1.02578 1.21507 0.90986 0.98769 1.03141 1.21365 0.95597 0.95227 1.01144 1.19007 0.91617 0.95663 0.95099 1.21718 0.92669 0.94050 1.49883 0.92141 1.26004 0.98630 1.00620 0.94755 1.70094 1.07014 1.29199 1.51010 0.85432 0.77864 0.79302 0.78357 1.19745 1.20672 1.18790 1.17729 0.88674 0.88077 0.90081 1.42921 1.18862 1.08761 1.69650 0.90517 0.91648 0.89570 0.82281 0.83140 0.84757 0.90993 0.91113 0.91281 0.91259 0.92504 0.92514 0.98750 0.98730 0.92730 0.75863 0.76122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.43 71.24 0.67 -0.24 16 2 C -0.18 -2.73 5.89 -19.76 -0.12 -2.85 16 3 C -0.04 -0.45 9.68 22.29 0.22 -0.24 16 4 C -0.19 -2.83 10.02 22.24 0.22 -2.61 16 5 C -0.03 -0.73 9.61 22.53 0.22 -0.52 16 6 C -0.23 -5.84 5.89 -19.99 -0.12 -5.96 16 7 C 0.51 15.29 7.86 70.20 0.55 15.84 16 8 O -0.54 -17.49 13.61 19.75 0.27 -17.22 16 9 O -0.36 -11.04 9.49 -56.68 -0.54 -11.58 16 10 C 0.08 2.42 5.48 71.98 0.39 2.81 16 11 C -0.11 -3.71 5.59 30.60 0.17 -3.54 16 12 C -0.10 -3.96 5.15 30.60 0.16 -3.80 16 13 C 0.02 1.24 4.97 29.85 0.15 1.39 16 14 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 18 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.26 5.52 6.74 38.74 0.26 5.78 16 23 N -0.86 -16.08 8.12 -50.93 -0.41 -16.49 16 24 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.56 6.99 -2.39 -0.02 0.54 16 26 H 0.09 0.49 8.08 -2.39 -0.02 0.47 16 27 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 28 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 29 H 0.13 2.79 7.62 -2.91 -0.02 2.77 16 30 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.41 9.08 6.10 -92.70 -0.57 8.51 16 40 H 0.41 5.25 7.50 -92.71 -0.70 4.55 16 Total: -1.00 -69.41 337.98 4.89 -64.52 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -0.21 Total: 16.03 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.47 Total: -24.90 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -0.13 Total: -73.67 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.27 Total: -28.80 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.41 4.89 -64.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385403524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.947 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds