Wall clock time and date at job start Mon Mar 30 2020 07:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48504 * 109.47580 * 270.00756 * 3 2 1 5 5 H 1.48507 * 109.47134 * 30.00536 * 3 2 1 6 6 H 1.48502 * 109.47077 * 150.00336 * 3 2 1 7 7 C 1.37874 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46893 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46955 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46955 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00228 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.47229 * 35.00487 * 14 13 12 16 16 C 1.50705 * 109.47169 * 275.00192 * 14 13 12 17 17 O 1.20819 * 120.00238 * 0.02562 * 16 14 13 18 18 O 1.34233 * 119.99853 * 179.97438 * 16 14 13 19 19 C 1.50703 * 109.47483 * 155.00214 * 14 13 12 20 20 C 1.38235 * 120.00292 * 220.00182 * 19 14 13 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 14 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 39.97475 * 19 14 13 25 25 H 0.96993 * 119.99935 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47249 * 60.00275 * 9 7 2 27 27 H 1.08997 * 109.46836 * 299.99823 * 9 7 2 28 28 H 1.09004 * 109.47326 * 60.00174 * 10 9 7 29 29 H 1.09001 * 109.47467 * 300.00067 * 10 9 7 30 30 H 1.08997 * 109.47169 * 60.00847 * 11 10 9 31 31 H 1.08997 * 109.46942 * 299.99963 * 11 10 9 32 32 H 1.09004 * 109.47326 * 60.00341 * 12 11 10 33 33 H 1.09001 * 109.47467 * 300.00234 * 12 11 10 34 34 H 1.00906 * 111.00223 * 303.95863 * 13 12 11 35 35 H 0.96701 * 116.99934 * 180.02562 * 18 16 14 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 14 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 7 1.7402 -7.4222 -0.0006 14 6 2.6646 -8.5638 -0.0006 15 1 3.5478 -8.3161 0.5882 16 6 3.0761 -8.8770 -1.4161 17 8 2.6440 -8.2168 -2.3310 18 8 3.9235 -9.8890 -1.6603 19 6 1.9805 -9.7643 0.6010 20 6 2.6792 -10.6074 1.4447 21 6 2.0515 -11.7083 1.9968 22 6 0.7248 -11.9655 1.7061 23 6 0.0256 -11.1216 0.8636 24 6 0.6540 -10.0219 0.3096 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5570 0.8897 28 1 2.8727 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8922 30 1 0.8528 -5.0447 -0.8905 31 1 0.8547 -5.0449 0.8895 32 1 3.1019 -6.0922 0.8878 33 1 3.1007 -6.0923 -0.8922 34 1 1.1045 -7.4720 0.7815 35 1 4.1585 -10.0515 -2.5842 36 1 3.7156 -10.4060 1.6723 37 1 2.5975 -12.3673 2.6556 38 1 0.2355 -12.8281 2.1340 39 1 -1.0108 -11.3227 0.6361 40 1 0.1081 -9.3632 -0.3495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385849094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:26 Heat of formation + Delta-G solvation = -81.160992 kcal Electronic energy + Delta-G solvation = -20475.044547 eV Core-core repulsion = 17253.906800 eV Total energy + Delta-G solvation = -3221.137746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68215 -39.25882 -36.92470 -35.93452 -34.41736 -32.63108 -31.28964 -31.04101 -28.46890 -26.62263 -24.26511 -22.87225 -22.73729 -21.33046 -20.87115 -19.91326 -18.29094 -17.35615 -16.70357 -16.20653 -16.04661 -15.46326 -15.18012 -15.04615 -14.51453 -14.31944 -14.15416 -13.67526 -13.44679 -13.03400 -12.88438 -12.50710 -12.29031 -11.71947 -11.66359 -11.51724 -11.32834 -11.24002 -10.97488 -10.72241 -10.53976 -10.47469 -10.39656 -9.59573 -9.25595 -9.19939 -9.09372 -8.96215 -8.61967 -8.29550 -5.94787 -3.96879 0.94879 1.12374 2.15821 2.77296 3.34963 3.40783 3.44166 3.46951 4.07744 4.26875 4.50221 4.60600 4.72248 4.86866 4.90572 5.13281 5.20804 5.32086 5.39316 5.41215 5.49264 5.61583 5.76779 5.88554 6.09443 6.15023 6.18898 6.23461 6.28010 6.39537 6.52221 6.67534 6.80329 6.87366 7.01445 7.20423 7.24888 7.74518 7.85720 7.90799 8.06605 8.49282 9.10650 9.66773 11.16638 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.002817 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.971912 B = 9938.175280 C =10414.848317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.113 4.113 12 C 0.059 3.941 13 N -0.668 5.668 14 C 0.143 3.857 15 H 0.089 0.911 16 C 0.480 3.520 17 O -0.483 6.483 18 O -0.520 6.520 19 C -0.097 4.097 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.095 4.095 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.356 0.644 35 H 0.408 0.592 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 -26.867 2.985 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.069 4.069 13 N -0.302 5.302 14 C 0.031 3.969 15 H 0.107 0.893 16 C 0.319 3.681 17 O -0.368 6.368 18 O -0.332 6.332 19 C -0.098 4.098 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.113 4.113 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.178 0.822 35 H 0.267 0.733 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.329 -26.471 2.455 26.935 hybrid contribution 0.921 0.883 0.231 1.296 sum 5.249 -25.588 2.686 26.259 Atomic orbital electron populations 1.69970 1.06036 1.26495 1.51076 1.25034 0.94848 0.99218 0.95456 0.86612 0.79824 0.83574 0.78084 1.20680 1.21250 1.19935 1.21292 0.93012 0.91229 1.50262 0.92786 1.19088 0.94019 0.91287 0.97190 1.21587 0.99113 0.93863 1.00101 1.21611 0.97793 0.93520 1.02210 1.22225 0.96524 0.87811 1.00377 1.60053 1.19048 1.00387 1.50719 1.19754 0.96594 0.91093 0.89432 0.89349 1.23278 0.75487 0.76990 0.92318 1.90751 1.51568 1.48420 1.46028 1.84512 1.61021 1.51154 1.36518 1.19486 0.94756 0.96212 0.99296 1.21030 0.99746 0.94434 0.96257 1.21116 0.95112 0.97559 1.00340 1.21241 0.94674 0.99338 0.97899 1.21202 1.00189 0.94997 0.97594 1.21197 0.94050 0.97164 0.98891 0.93062 0.96558 0.96700 0.93663 0.93392 0.91331 0.92599 0.95065 0.90861 0.82226 0.73336 0.85720 0.85814 0.85991 0.85716 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.11 -1.99 5.47 -26.73 -0.15 -2.13 16 12 C 0.06 0.85 5.38 -3.82 -0.02 0.83 16 13 N -0.67 -8.50 5.23 -109.18 -0.57 -9.07 16 14 C 0.14 1.57 2.73 -70.01 -0.19 1.38 16 15 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 16 C 0.48 5.92 7.49 36.01 0.27 6.19 16 17 O -0.48 -7.76 16.68 -18.74 -0.31 -8.08 16 18 O -0.52 -4.81 13.34 -39.27 -0.52 -5.33 16 19 C -0.10 -0.96 4.64 -104.62 -0.49 -1.44 16 20 C -0.10 -0.82 9.67 -39.59 -0.38 -1.20 16 21 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 22 C -0.11 -0.86 10.05 -39.58 -0.40 -1.25 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.09 -0.94 9.00 -39.58 -0.36 -1.29 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.42 8.05 -51.93 -0.42 0.00 16 33 H 0.07 1.16 7.62 -51.93 -0.40 0.76 16 34 H 0.36 4.08 7.99 -39.29 -0.31 3.76 16 35 H 0.41 2.16 9.10 45.56 0.41 2.57 16 36 H 0.12 0.87 8.04 -52.49 -0.42 0.44 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.42 7.72 -52.49 -0.41 1.01 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -34.33 343.86 -8.99 -43.31 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.28 Total: 1.38 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.19 Total: -17.62 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.17 Total: -35.94 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.84 Total: -13.41 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.33 -8.99 -43.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385849094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.848 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds