Wall clock time and date at job start Mon Mar 30 2020 07:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48504 * 109.47580 * 270.00756 * 3 2 1 5 5 H 1.48507 * 109.47134 * 30.00536 * 3 2 1 6 6 H 1.48502 * 109.47077 * 150.00336 * 3 2 1 7 7 C 1.37874 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46893 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46955 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46955 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47271 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00228 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.47229 * 35.00487 * 14 13 12 16 16 C 1.50705 * 109.47169 * 275.00192 * 14 13 12 17 17 O 1.20819 * 120.00238 * 0.02562 * 16 14 13 18 18 O 1.34233 * 119.99853 * 179.97438 * 16 14 13 19 19 C 1.50703 * 109.47483 * 155.00214 * 14 13 12 20 20 C 1.38235 * 120.00292 * 220.00182 * 19 14 13 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 14 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 39.97475 * 19 14 13 25 25 H 0.96993 * 119.99935 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47249 * 60.00275 * 9 7 2 27 27 H 1.08997 * 109.46836 * 299.99823 * 9 7 2 28 28 H 1.09004 * 109.47326 * 60.00174 * 10 9 7 29 29 H 1.09001 * 109.47467 * 300.00067 * 10 9 7 30 30 H 1.08997 * 109.47169 * 60.00847 * 11 10 9 31 31 H 1.08997 * 109.46942 * 299.99963 * 11 10 9 32 32 H 1.09004 * 109.47326 * 60.00341 * 12 11 10 33 33 H 1.09001 * 109.47467 * 300.00234 * 12 11 10 34 34 H 1.00906 * 111.00223 * 303.95863 * 13 12 11 35 35 H 0.96701 * 116.99934 * 180.02562 * 18 16 14 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 14 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 7 1.7402 -7.4222 -0.0006 14 6 2.6646 -8.5638 -0.0006 15 1 3.5478 -8.3161 0.5882 16 6 3.0761 -8.8770 -1.4161 17 8 2.6440 -8.2168 -2.3310 18 8 3.9235 -9.8890 -1.6603 19 6 1.9805 -9.7643 0.6010 20 6 2.6792 -10.6074 1.4447 21 6 2.0515 -11.7083 1.9968 22 6 0.7248 -11.9655 1.7061 23 6 0.0256 -11.1216 0.8636 24 6 0.6540 -10.0219 0.3096 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5570 0.8897 28 1 2.8727 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8922 30 1 0.8528 -5.0447 -0.8905 31 1 0.8547 -5.0449 0.8895 32 1 3.1019 -6.0922 0.8878 33 1 3.1007 -6.0923 -0.8922 34 1 1.1045 -7.4720 0.7815 35 1 4.1585 -10.0515 -2.5842 36 1 3.7156 -10.4060 1.6723 37 1 2.5975 -12.3673 2.6556 38 1 0.2355 -12.8281 2.1340 39 1 -1.0108 -11.3227 0.6361 40 1 0.1081 -9.3632 -0.3495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385849094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:25 Heat of formation + Delta-G solvation = -103.338919 kcal Electronic energy + Delta-G solvation = -20476.006254 eV Core-core repulsion = 17253.906800 eV Total energy + Delta-G solvation = -3222.099453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56343 -39.97439 -37.98442 -36.96204 -36.03479 -34.38443 -32.42621 -31.78995 -29.90645 -27.85541 -25.95515 -23.71764 -23.54568 -22.68599 -21.97689 -21.38389 -19.17166 -18.46812 -18.10485 -17.53665 -16.86464 -16.57028 -16.52822 -16.14686 -15.88524 -15.45252 -15.06324 -14.65756 -14.44483 -14.22588 -14.04181 -13.71205 -13.55565 -13.37850 -13.12055 -12.85994 -12.53989 -12.35715 -12.29079 -12.13324 -12.05481 -11.90623 -11.65311 -11.39413 -11.31734 -11.02867 -10.55739 -9.82158 -9.74612 -9.60018 -8.20075 -6.31696 0.30135 0.50156 1.22857 1.39017 1.41083 1.52120 1.96718 2.40715 2.79184 3.12555 3.17546 3.50242 3.89529 4.07268 4.12395 4.16966 4.24902 4.31955 4.37797 4.50450 4.60613 4.62644 4.69297 4.78422 4.89398 5.01196 5.16425 5.22136 5.24781 5.33260 5.52362 5.54175 5.55935 5.61410 5.62944 5.77409 5.83369 5.87625 6.08284 6.24801 6.27519 6.85826 7.03237 7.37565 8.91989 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.002817 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.971912 B = 9938.175280 C =10414.848317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.103 4.103 12 C 0.072 3.928 13 N -0.678 5.678 14 C 0.144 3.856 15 H 0.108 0.892 16 C 0.484 3.516 17 O -0.530 6.530 18 O -0.509 6.509 19 C -0.107 4.107 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.130 4.130 24 C -0.113 4.113 25 H 0.264 0.736 26 H -0.014 1.014 27 H -0.007 1.007 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.363 0.637 35 H 0.425 0.575 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -28.161 4.246 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.141 4.141 12 C -0.056 4.056 13 N -0.313 5.313 14 C 0.033 3.967 15 H 0.125 0.875 16 C 0.325 3.675 17 O -0.418 6.418 18 O -0.323 6.323 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.148 4.148 24 C -0.131 4.131 25 H 0.072 0.928 26 H 0.004 0.996 27 H 0.011 0.989 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.185 0.815 35 H 0.287 0.713 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.034 -27.807 3.718 28.696 hybrid contribution 0.368 1.174 -0.162 1.241 sum 6.402 -26.633 3.556 27.622 Atomic orbital electron populations 1.70108 1.07875 1.27786 1.51757 1.26035 0.95815 1.03523 0.94727 0.85422 0.78701 0.78273 0.78492 1.19856 1.20566 1.18564 1.21747 0.93581 0.92520 1.50458 0.92167 1.19014 0.94492 0.93262 0.94618 1.21390 0.98005 0.93569 1.00475 1.21421 0.97971 0.93140 1.01609 1.21941 0.95513 0.87518 1.00644 1.59886 1.19687 1.00281 1.51442 1.19805 0.96980 0.90882 0.89029 0.87486 1.23585 0.74858 0.76597 0.92432 1.90738 1.53458 1.50199 1.47438 1.84469 1.59866 1.49744 1.38185 1.19424 0.94782 0.96289 1.00275 1.21261 1.00538 0.94355 0.95723 1.21468 0.95252 0.97396 1.00080 1.21577 0.94866 0.99635 0.97128 1.21415 1.00983 0.94701 0.97692 1.21183 0.94445 0.97887 0.99579 0.92757 0.99588 0.98870 0.92513 0.93591 0.93212 0.91980 0.93088 0.92179 0.81458 0.71318 0.84095 0.83321 0.83631 0.84516 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.68 13.29 21.45 0.28 -58.40 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -32.21 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -4.11 5.15 30.59 0.16 -3.96 16 11 C -0.10 -3.67 5.47 30.59 0.17 -3.50 16 12 C 0.07 2.06 5.38 86.30 0.46 2.52 16 13 N -0.68 -17.07 5.23 -499.35 -2.61 -19.68 16 14 C 0.14 3.02 2.73 43.43 0.12 3.14 16 15 H 0.11 1.84 7.66 -2.39 -0.02 1.83 16 16 C 0.48 11.67 7.49 71.24 0.53 12.20 16 17 O -0.53 -17.31 16.68 21.98 0.37 -16.94 16 18 O -0.51 -8.66 13.34 -51.45 -0.69 -9.35 16 19 C -0.11 -1.98 4.64 -19.87 -0.09 -2.07 16 20 C -0.10 -1.46 9.67 22.27 0.22 -1.24 16 21 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 22 C -0.11 -1.44 10.05 22.27 0.22 -1.21 16 23 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 24 C -0.11 -2.18 9.00 22.27 0.20 -1.98 16 25 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 26 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.26 8.05 -2.38 -0.02 1.24 16 33 H 0.06 1.89 7.62 -2.39 -0.02 1.87 16 34 H 0.36 8.20 7.99 -89.69 -0.72 7.48 16 35 H 0.43 3.91 9.10 -74.06 -0.67 3.24 16 36 H 0.14 1.52 8.04 -2.91 -0.02 1.50 16 37 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.12 2.61 7.72 -2.91 -0.02 2.59 16 Total: -1.00 -75.06 343.86 2.31 -72.75 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -0.35 Total: 13.73 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 3.28 Total: -29.48 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -2.33 Total: -78.08 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.32 Total: -26.29 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -75.06 2.31 -72.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385849094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.591 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds