Wall clock time and date at job start Mon Mar 30 2020 07:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47022 * 2 1 4 4 C 1.35131 * 125.61425 * 90.00191 * 3 2 1 5 5 C 1.40369 * 107.11381 * 180.02562 * 4 3 2 6 6 C 1.36545 * 106.70829 * 359.97438 * 5 4 3 7 7 C 1.46659 * 125.98870 * 179.73859 * 6 5 4 8 8 O 1.21688 * 119.99828 * 353.06221 * 7 6 5 9 9 N 1.34777 * 119.99787 * 173.06124 * 7 6 5 10 10 C 1.46921 * 120.63397 * 4.07783 * 9 7 6 11 11 C 1.53189 * 108.77676 * 233.58597 * 10 9 7 12 12 C 1.53043 * 109.31373 * 305.36697 * 11 10 9 13 13 C 1.53035 * 109.53669 * 61.36274 * 12 11 10 14 14 H 1.09001 * 109.49729 * 58.58944 * 13 12 11 15 15 C 1.50699 * 109.49620 * 178.65089 * 13 12 11 16 16 H 1.08005 * 120.00045 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00202 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99989 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00127 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47234 * 60.00008 * 19 17 15 21 21 H 1.48501 * 109.46928 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47123 * 299.99590 * 19 17 15 23 23 C 1.46931 * 120.62460 * 183.79921 * 9 7 6 24 24 O 1.33926 * 125.61809 * 270.04163 * 3 2 1 25 25 H 1.08992 * 109.47113 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46616 * 300.00138 * 1 2 3 27 27 H 1.08998 * 109.46915 * 59.99830 * 1 2 3 28 28 H 1.09001 * 109.47288 * 240.00192 * 2 1 3 29 29 H 1.08994 * 109.47149 * 119.99722 * 2 1 3 30 30 H 1.08001 * 126.44529 * 0.05054 * 4 3 2 31 31 H 1.07999 * 126.64697 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.58801 * 353.37378 * 10 9 7 33 33 H 1.09008 * 109.58372 * 113.79878 * 10 9 7 34 34 H 1.08999 * 109.49609 * 65.31901 * 11 10 9 35 35 H 1.08996 * 109.49543 * 185.41294 * 11 10 9 36 36 H 1.08998 * 109.45779 * 181.38374 * 12 11 10 37 37 H 1.09001 * 109.45628 * 301.34328 * 12 11 10 38 38 H 0.96999 * 120.00090 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.58724 * 246.19855 * 23 9 7 40 40 H 1.08997 * 109.58864 * 6.63280 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1627 1.0986 5 6 2.7378 3.4180 0.6532 6 6 2.7238 3.3776 -0.7116 7 6 3.1046 4.4724 -1.6101 8 8 3.3529 5.5738 -1.1560 9 7 3.1795 4.2587 -2.9387 10 6 2.7971 2.9606 -3.5109 11 6 3.9547 2.4393 -4.3681 12 6 4.3317 3.4977 -5.4073 13 6 4.7929 4.7718 -4.6960 14 1 5.6450 4.5429 -4.0559 15 6 5.1953 5.8018 -5.7198 16 1 5.1292 5.5710 -6.7728 17 6 5.6488 7.0384 -5.3122 18 7 5.7297 7.3193 -4.0299 19 14 6.1469 8.3154 -6.5813 20 1 4.9847 8.6284 -7.4512 21 1 6.5944 9.5514 -5.8905 22 1 7.2568 7.7820 -7.4110 23 6 3.6395 5.3214 -3.8431 24 8 2.2916 2.1565 -1.0887 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.1846 1.8488 2.1261 31 1 3.0327 4.2537 1.2703 32 1 2.5902 2.2537 -2.7073 33 1 1.9089 3.0821 -4.1311 34 1 4.8146 2.2324 -3.7311 35 1 3.6485 1.5243 -4.8752 36 1 5.1389 3.1194 -6.0345 37 1 3.4643 3.7221 -6.0281 38 1 6.0484 8.1894 -3.7432 39 1 2.8187 5.6315 -4.4898 40 1 3.9887 6.1727 -3.2588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397721118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:47 Heat of formation + Delta-G solvation = -25.285237 kcal Electronic energy + Delta-G solvation = -22002.819619 eV Core-core repulsion = 18784.104827 eV Total energy + Delta-G solvation = -3218.714792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.64463 -39.15797 -36.74522 -34.44267 -33.37595 -32.75440 -31.76973 -29.94117 -28.76538 -25.36810 -24.99836 -23.66496 -22.05467 -21.64390 -20.90579 -20.04506 -18.79959 -17.12296 -16.34805 -16.10006 -15.85093 -15.21843 -14.62155 -14.44779 -14.20670 -13.87061 -13.71781 -13.23469 -12.96936 -12.90469 -12.73850 -12.56113 -12.38126 -12.10146 -11.80700 -11.78336 -11.29545 -10.97073 -10.82863 -10.52287 -10.28886 -10.20146 -9.91700 -9.87241 -9.61093 -9.13001 -8.95818 -8.45020 -8.39952 -7.76297 -5.99921 -4.08819 1.30382 2.46102 2.71982 3.32366 3.38497 3.39735 3.62623 3.76383 4.42995 4.50137 4.76336 4.92135 4.96983 5.08026 5.23643 5.30154 5.44025 5.52765 5.54142 5.58647 5.69440 5.79652 5.86943 5.92992 5.96522 6.14008 6.30728 6.41132 6.49260 6.63502 6.65963 6.84485 6.96223 7.02689 7.17696 7.22809 7.61583 7.84975 7.97393 8.18112 8.36854 8.71430 8.95070 9.56844 11.05700 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032086 B = 0.004507 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.438707 B = 6211.313257 C = 6865.590334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.005 4.005 4 C -0.217 4.217 5 C -0.132 4.132 6 C -0.059 4.059 7 C 0.586 3.414 8 O -0.519 6.519 9 N -0.593 5.593 10 C 0.092 3.908 11 C -0.132 4.132 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.030 0.970 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.112 3.888 24 O -0.152 6.152 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.265 0.735 39 H 0.046 0.954 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 -15.021 7.497 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C -0.056 4.056 4 C -0.236 4.236 5 C -0.153 4.153 6 C -0.111 4.111 7 C 0.372 3.628 8 O -0.397 6.397 9 N -0.324 5.324 10 C -0.031 4.031 11 C -0.170 4.170 12 C -0.149 4.149 13 C 0.021 3.979 14 H 0.048 0.952 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.007 4.007 24 O -0.049 6.049 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.168 0.832 31 H 0.175 0.825 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.027 -14.343 7.520 18.541 hybrid contribution 0.329 0.732 -0.476 0.934 sum -8.698 -13.610 7.043 17.621 Atomic orbital electron populations 1.21792 0.93839 1.02292 1.02857 1.20133 0.96426 0.87446 1.04237 1.22929 1.02299 0.95297 0.85108 1.21490 1.08303 0.94430 0.99383 1.21890 1.01527 0.98783 0.93103 1.22600 1.08516 0.84996 0.94976 1.16800 0.78800 0.85444 0.81732 1.90880 1.50952 1.22368 1.75501 1.48473 1.63072 1.15112 1.05763 1.22217 0.97384 0.85270 0.98213 1.21932 0.98013 0.98585 0.98461 1.21644 1.00062 0.96327 0.96860 1.19052 0.93275 0.91371 0.94187 0.95190 1.21040 1.44178 0.98199 0.92642 0.92334 1.25059 0.95212 0.98464 0.95267 1.69874 1.45707 1.22596 1.13674 0.86632 0.78956 0.80826 0.81438 1.20229 1.21235 1.20276 1.22491 0.96312 0.90262 0.91667 1.84234 1.64998 1.22442 1.33217 0.91620 0.92132 0.92101 0.89848 0.88860 0.83205 0.82495 0.88428 0.91902 0.92198 0.92155 0.92918 0.93127 0.92532 0.93551 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.69 16 2 C -0.05 -0.36 6.47 -27.88 -0.18 -0.54 16 3 C -0.01 -0.06 6.57 -35.41 -0.23 -0.29 16 4 C -0.22 -2.69 10.77 -39.89 -0.43 -3.12 16 5 C -0.13 -2.06 10.63 -39.39 -0.42 -2.48 16 6 C -0.06 -1.05 6.86 -36.80 -0.25 -1.30 16 7 C 0.59 12.76 7.66 -12.86 -0.10 12.66 16 8 O -0.52 -13.12 16.30 5.20 0.08 -13.03 16 9 N -0.59 -12.66 2.97 -174.05 -0.52 -13.18 16 10 C 0.09 1.57 6.31 -3.71 -0.02 1.55 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.11 -2.25 5.10 -26.69 -0.14 -2.39 16 13 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 14 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 15 C -0.52 -14.21 8.56 -34.44 -0.29 -14.51 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 18 N -0.88 -25.81 11.41 55.43 0.63 -25.18 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.11 2.78 5.42 -3.48 -0.02 2.76 16 24 O -0.15 -2.29 7.07 5.00 0.04 -2.26 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.10 1.54 3.76 -55.39 -0.21 1.33 16 33 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.12 3.52 5.17 -51.93 -0.27 3.25 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -31.37 325.29 -8.00 -39.37 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.94 Total: 1.38 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.18 Total: -8.30 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.12 Total: -38.36 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.12 Total: -15.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.37 -8.00 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397721118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.085 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds