Wall clock time and date at job start Mon Mar 30 2020 07:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47022 * 2 1 4 4 C 1.35131 * 125.61425 * 90.00191 * 3 2 1 5 5 C 1.40369 * 107.11381 * 180.02562 * 4 3 2 6 6 C 1.36545 * 106.70829 * 359.97438 * 5 4 3 7 7 C 1.46659 * 125.98870 * 179.73859 * 6 5 4 8 8 O 1.21688 * 119.99828 * 353.06221 * 7 6 5 9 9 N 1.34777 * 119.99787 * 173.06124 * 7 6 5 10 10 C 1.46921 * 120.63397 * 4.07783 * 9 7 6 11 11 C 1.53189 * 108.77676 * 233.58597 * 10 9 7 12 12 C 1.53043 * 109.31373 * 305.36697 * 11 10 9 13 13 C 1.53035 * 109.53669 * 61.36274 * 12 11 10 14 14 H 1.09001 * 109.49729 * 58.58944 * 13 12 11 15 15 C 1.50699 * 109.49620 * 178.65089 * 13 12 11 16 16 H 1.08005 * 120.00045 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00202 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99989 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00127 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47234 * 60.00008 * 19 17 15 21 21 H 1.48501 * 109.46928 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47123 * 299.99590 * 19 17 15 23 23 C 1.46931 * 120.62460 * 183.79921 * 9 7 6 24 24 O 1.33926 * 125.61809 * 270.04163 * 3 2 1 25 25 H 1.08992 * 109.47113 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46616 * 300.00138 * 1 2 3 27 27 H 1.08998 * 109.46915 * 59.99830 * 1 2 3 28 28 H 1.09001 * 109.47288 * 240.00192 * 2 1 3 29 29 H 1.08994 * 109.47149 * 119.99722 * 2 1 3 30 30 H 1.08001 * 126.44529 * 0.05054 * 4 3 2 31 31 H 1.07999 * 126.64697 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.58801 * 353.37378 * 10 9 7 33 33 H 1.09008 * 109.58372 * 113.79878 * 10 9 7 34 34 H 1.08999 * 109.49609 * 65.31901 * 11 10 9 35 35 H 1.08996 * 109.49543 * 185.41294 * 11 10 9 36 36 H 1.08998 * 109.45779 * 181.38374 * 12 11 10 37 37 H 1.09001 * 109.45628 * 301.34328 * 12 11 10 38 38 H 0.96999 * 120.00090 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.58724 * 246.19855 * 23 9 7 40 40 H 1.08997 * 109.58864 * 6.63280 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1627 1.0986 5 6 2.7378 3.4180 0.6532 6 6 2.7238 3.3776 -0.7116 7 6 3.1046 4.4724 -1.6101 8 8 3.3529 5.5738 -1.1560 9 7 3.1795 4.2587 -2.9387 10 6 2.7971 2.9606 -3.5109 11 6 3.9547 2.4393 -4.3681 12 6 4.3317 3.4977 -5.4073 13 6 4.7929 4.7718 -4.6960 14 1 5.6450 4.5429 -4.0559 15 6 5.1953 5.8018 -5.7198 16 1 5.1292 5.5710 -6.7728 17 6 5.6488 7.0384 -5.3122 18 7 5.7297 7.3193 -4.0299 19 14 6.1469 8.3154 -6.5813 20 1 4.9847 8.6284 -7.4512 21 1 6.5944 9.5514 -5.8905 22 1 7.2568 7.7820 -7.4110 23 6 3.6395 5.3214 -3.8431 24 8 2.2916 2.1565 -1.0887 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.1846 1.8488 2.1261 31 1 3.0327 4.2537 1.2703 32 1 2.5902 2.2537 -2.7073 33 1 1.9089 3.0821 -4.1311 34 1 4.8146 2.2324 -3.7311 35 1 3.6485 1.5243 -4.8752 36 1 5.1389 3.1194 -6.0345 37 1 3.4643 3.7221 -6.0281 38 1 6.0484 8.1894 -3.7432 39 1 2.8187 5.6315 -4.4898 40 1 3.9887 6.1727 -3.2588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397721118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:47 Heat of formation + Delta-G solvation = -44.114259 kcal Electronic energy + Delta-G solvation = -22003.636107 eV Core-core repulsion = 18784.104827 eV Total energy + Delta-G solvation = -3219.531279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.80323 -40.83044 -38.47275 -35.53107 -34.99191 -33.90854 -33.50671 -31.70953 -29.96405 -27.16072 -26.58680 -24.71468 -23.62928 -22.98377 -22.07568 -21.43657 -20.44201 -18.81318 -18.03820 -17.47711 -17.28089 -16.68963 -16.41053 -15.84929 -15.31282 -15.23626 -15.14771 -14.60450 -14.52546 -14.11620 -14.10664 -14.01540 -13.73667 -13.43402 -13.21836 -12.86277 -12.66321 -12.41039 -12.33065 -12.25369 -11.90202 -11.76579 -11.63693 -11.38894 -11.04857 -11.01366 -10.84144 -10.54602 -9.72875 -9.34701 -8.12642 -6.30207 0.02632 1.37181 1.40846 1.42677 1.50699 1.51625 2.07371 2.22865 2.41832 3.15634 3.44319 3.77025 3.90333 4.07083 4.11018 4.27275 4.29614 4.39283 4.47235 4.55866 4.57858 4.70338 4.76510 4.81656 4.88087 5.02486 5.06978 5.08616 5.09200 5.20076 5.25267 5.29663 5.38358 5.46772 5.52357 5.59036 5.83739 5.91145 5.96249 6.28842 6.48877 6.81666 7.05324 7.40249 8.91319 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032086 B = 0.004507 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.438707 B = 6211.313257 C = 6865.590334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C 0.017 3.983 4 C -0.220 4.220 5 C -0.124 4.124 6 C -0.100 4.100 7 C 0.578 3.422 8 O -0.574 6.574 9 N -0.599 5.599 10 C 0.088 3.912 11 C -0.123 4.123 12 C -0.105 4.105 13 C 0.038 3.962 14 H -0.013 1.013 15 C -0.537 4.537 16 H 0.065 0.935 17 C 0.009 3.991 18 N -0.917 5.917 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.125 3.875 24 O -0.157 6.157 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.187 0.813 31 H 0.154 0.846 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.261 0.739 39 H 0.042 0.958 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -18.336 7.396 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.035 4.035 4 C -0.238 4.238 5 C -0.145 4.145 6 C -0.151 4.151 7 C 0.368 3.632 8 O -0.457 6.457 9 N -0.329 5.329 10 C -0.033 4.033 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.019 3.981 14 H 0.005 0.995 15 C -0.576 4.576 16 H 0.083 0.917 17 C -0.190 4.190 18 N -0.556 5.556 19 Si 0.786 3.214 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.192 1.192 23 C 0.003 3.997 24 O -0.054 6.054 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.204 0.796 31 H 0.172 0.828 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.420 -17.710 7.391 21.837 hybrid contribution 0.703 1.627 -0.344 1.805 sum -9.717 -16.083 7.047 20.068 Atomic orbital electron populations 1.21800 0.92938 1.03697 1.02237 1.20458 0.96967 0.84448 1.06317 1.23933 0.99078 0.96417 0.84049 1.21855 1.07948 0.92692 1.01331 1.22167 0.99806 1.00145 0.92376 1.21743 1.13069 0.85695 0.94631 1.17300 0.77833 0.86016 0.82085 1.90825 1.53470 1.24887 1.76496 1.48491 1.62877 1.15918 1.05629 1.22526 0.98045 0.83542 0.99153 1.21892 0.97522 0.99180 0.97485 1.21533 1.00435 0.94850 0.97456 1.18990 0.91933 0.93580 0.93578 0.99465 1.21482 1.43805 0.98896 0.93389 0.91671 1.25933 0.95287 1.00762 0.97022 1.70082 1.46830 1.22791 1.15863 0.85565 0.79006 0.77908 0.78928 1.19128 1.21469 1.19201 1.21947 0.96014 0.90304 0.91418 1.84111 1.65207 1.21558 1.34553 0.89244 0.92118 0.93444 0.88655 0.85920 0.79591 0.82810 0.86392 0.90140 0.93374 0.87501 0.92462 0.92177 0.93037 0.93921 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.90 71.98 0.71 -0.77 16 2 C -0.05 -0.50 6.47 29.85 0.19 -0.31 16 3 C 0.02 0.35 6.57 24.97 0.16 0.51 16 4 C -0.22 -4.79 10.77 22.07 0.24 -4.55 16 5 C -0.12 -3.82 10.63 22.39 0.24 -3.58 16 6 C -0.10 -3.60 6.86 24.07 0.17 -3.44 16 7 C 0.58 26.59 7.66 86.44 0.66 27.26 16 8 O -0.57 -31.43 16.30 -4.31 -0.07 -31.50 16 9 N -0.60 -26.57 2.97 -822.80 -2.44 -29.01 16 10 C 0.09 2.92 6.31 86.36 0.55 3.47 16 11 C -0.12 -3.95 6.08 30.67 0.19 -3.76 16 12 C -0.11 -4.19 5.10 30.62 0.16 -4.04 16 13 C 0.04 2.00 2.26 -11.32 -0.03 1.98 16 14 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 15 C -0.54 -30.06 8.56 25.60 0.22 -29.84 16 16 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 17 C 0.01 0.54 5.31 84.65 0.45 0.98 16 18 N -0.92 -56.76 11.41 21.45 0.24 -56.52 16 19 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C 0.12 6.53 5.42 86.51 0.47 7.00 16 24 O -0.16 -4.45 7.07 -5.01 -0.04 -4.49 16 25 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.15 4.71 8.06 -2.91 -0.02 4.69 16 32 H 0.12 3.49 3.76 -57.26 -0.22 3.28 16 33 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.08 4.88 5.17 -2.39 -0.01 4.87 16 Total: -1.00 -74.54 325.29 4.92 -69.63 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.82 Total: 14.23 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.37 Total: -9.08 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.20 Total: -85.53 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.11 Total: -35.99 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -74.54 4.92 -69.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397721118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.512 kcal (2) G-P(sol) polarization free energy of solvation -74.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds