Wall clock time and date at job start Mon Mar 30 2020 08:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 H 1.09003 * 109.46788 * 55.40476 * 3 2 1 5 5 C 1.50697 * 109.47141 * 175.40107 * 3 2 1 6 6 O 1.20822 * 119.99758 * 110.37488 * 5 3 2 7 7 O 1.34230 * 120.00197 * 290.37369 * 5 3 2 8 8 N 1.46900 * 109.47144 * 295.40454 * 3 2 1 9 9 C 1.46902 * 110.99990 * 177.47798 * 8 3 2 10 10 C 1.46902 * 111.00092 * 301.43009 * 8 3 2 11 11 C 1.50694 * 109.47003 * 163.42770 * 10 8 3 12 12 C 1.38638 * 119.74992 * 90.00274 * 11 10 8 13 13 C 1.37611 * 120.24908 * 180.22989 * 12 11 10 14 14 C 1.40709 * 119.74689 * 359.52153 * 13 12 11 15 15 C 1.41395 * 120.24807 * 180.23282 * 14 13 12 16 16 H 1.08007 * 120.00496 * 205.24101 * 15 14 13 17 17 C 1.39949 * 120.00112 * 25.23111 * 15 14 13 18 18 N 1.30825 * 119.99383 * 18.55621 * 17 15 14 19 19 Si 1.86796 * 120.00367 * 198.55640 * 17 15 14 20 20 H 1.48500 * 109.47023 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47491 * 120.00351 * 19 17 15 22 22 H 1.48501 * 109.47098 * 240.00125 * 19 17 15 23 23 C 1.40714 * 119.51160 * 0.47543 * 14 13 12 24 24 C 1.37619 * 119.74620 * 359.75030 * 23 14 13 25 25 H 1.09001 * 109.47002 * 305.19828 * 1 2 3 26 26 H 1.09003 * 109.46906 * 65.20361 * 1 2 3 27 27 H 1.09002 * 109.46929 * 185.19878 * 1 2 3 28 28 H 1.09000 * 109.46791 * 240.00142 * 2 1 3 29 29 H 1.09001 * 109.47060 * 120.00294 * 2 1 3 30 30 H 0.96700 * 116.99880 * 180.02562 * 7 5 3 31 31 H 1.08993 * 109.47124 * 183.95210 * 9 8 3 32 32 H 1.09007 * 109.46786 * 303.95443 * 9 8 3 33 33 H 1.09004 * 109.46866 * 63.94808 * 9 8 3 34 34 H 1.09001 * 109.46497 * 43.42908 * 10 8 3 35 35 H 1.09000 * 109.46756 * 283.43404 * 10 8 3 36 36 H 1.08005 * 119.87329 * 359.95609 * 12 11 10 37 37 H 1.08000 * 120.12608 * 179.72334 * 13 12 11 38 38 H 0.97008 * 119.99504 * 179.97438 * 18 17 15 39 39 H 1.08006 * 120.12933 * 179.73075 * 23 14 13 40 40 H 1.07998 * 119.88085 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6110 1.9795 0.8460 5 6 3.5427 1.4440 0.1139 6 8 4.2196 1.7826 -0.8279 7 8 4.1292 1.0692 1.2617 8 7 1.6431 2.1022 -1.2511 9 6 2.0647 3.5094 -1.2610 10 6 2.1762 1.3847 -2.4168 11 6 1.4394 1.8225 -3.6562 12 6 1.9103 2.8988 -4.3924 13 6 1.2428 3.3103 -5.5233 14 6 0.0840 2.6279 -5.9372 15 6 -0.6073 3.0386 -7.1002 16 1 -1.6604 2.8235 -7.2069 17 6 0.0729 3.7239 -8.1132 18 7 1.3788 3.6739 -8.1738 19 14 -0.8837 4.7101 -9.3788 20 1 -2.3370 4.6060 -9.0919 21 1 -0.4668 6.1339 -9.3151 22 1 -0.6079 4.1739 -10.7358 23 6 -0.3848 1.5368 -5.1823 24 6 0.2961 1.1456 -4.0521 25 1 -0.3633 0.5924 0.8398 26 1 -0.3633 0.4310 -0.9330 27 1 -0.3633 -1.0235 0.0931 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.0957 1.0869 1.2870 31 1 1.6977 3.9923 -2.1665 32 1 1.6563 4.0172 -0.3872 33 1 3.1532 3.5626 -1.2363 34 1 2.0436 0.3121 -2.2750 35 1 3.2374 1.6082 -2.5268 36 1 2.8018 3.4190 -4.0746 37 1 1.6089 4.1518 -6.0927 38 1 1.8502 4.1486 -8.8762 39 1 -1.2757 1.0086 -5.4884 40 1 -0.0616 0.3083 -3.4713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399119285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:16:12 Heat of formation + Delta-G solvation = -69.584459 kcal Electronic energy + Delta-G solvation = -21726.379025 eV Core-core repulsion = 18505.743275 eV Total energy + Delta-G solvation = -3220.635750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77142 -38.09963 -36.89940 -35.89271 -33.83851 -32.81277 -30.35820 -29.24240 -27.76250 -27.16005 -24.71514 -22.83958 -22.53891 -20.88586 -20.33666 -19.52899 -18.16745 -17.24540 -16.75583 -15.92635 -15.69132 -15.18783 -14.74300 -14.34495 -13.89035 -13.59550 -13.47217 -13.17524 -12.83785 -12.49687 -12.33885 -11.97549 -11.89468 -11.72721 -11.50779 -11.42948 -11.19343 -11.08157 -10.96331 -10.92485 -10.61224 -10.44870 -10.43678 -10.31412 -9.50464 -9.32173 -9.07212 -8.04207 -7.36722 -7.22734 -6.72455 -4.29363 2.14060 2.77228 3.02176 3.09584 3.14193 3.15121 3.20012 3.96612 4.14099 4.66989 4.78925 4.97173 5.13391 5.35746 5.46436 5.61512 5.72634 5.76588 5.85512 5.95108 6.01150 6.10704 6.16831 6.34219 6.36126 6.40712 6.47064 6.52684 6.66161 6.99970 7.12161 7.18152 7.29111 7.38637 7.44232 7.68169 7.85847 7.95525 8.11305 8.21763 8.36215 8.69828 8.95090 9.03849 10.22927 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.004000 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.069087 B = 6998.581333 C = 7481.187963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.092 3.908 4 H 0.114 0.886 5 C 0.444 3.556 6 O -0.506 6.506 7 O -0.523 6.523 8 N -0.496 5.496 9 C 0.011 3.989 10 C 0.096 3.904 11 C -0.202 4.202 12 C -0.092 4.092 13 C -0.166 4.166 14 C 0.113 3.887 15 C -0.465 4.465 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.794 5.794 19 Si 0.905 3.095 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.228 4.228 24 C -0.072 4.072 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.401 0.599 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.279 0.721 39 H 0.090 0.910 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -3.421 14.704 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.020 4.020 4 H 0.131 0.869 5 C 0.284 3.716 6 O -0.394 6.394 7 O -0.334 6.334 8 N -0.219 5.219 9 C -0.137 4.137 10 C -0.029 4.029 11 C -0.203 4.203 12 C -0.111 4.111 13 C -0.185 4.185 14 C 0.110 3.890 15 C -0.495 4.495 16 H 0.095 0.905 17 C -0.140 4.140 18 N -0.419 5.419 19 Si 0.729 3.271 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.201 1.201 23 C -0.248 4.248 24 C -0.090 4.090 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.259 0.741 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.845 -3.270 14.249 14.736 hybrid contribution 1.321 0.576 -0.611 1.565 sum 3.166 -2.694 13.638 14.257 Atomic orbital electron populations 1.21650 0.93635 1.01156 1.03475 1.21620 0.98172 0.92578 1.02791 1.21974 0.84077 0.99075 0.96859 0.86852 1.25789 0.93997 0.72353 0.79430 1.90701 1.66196 1.43952 1.38541 1.84627 1.28205 1.80498 1.40082 1.62736 1.56415 1.02710 0.99995 1.22586 0.99155 0.88792 1.03177 1.21207 0.97513 0.96610 0.87586 1.18834 1.00376 1.02741 0.98393 1.20533 0.98150 0.96493 0.95885 1.21231 0.98856 1.01831 0.96599 1.17605 0.91204 0.88826 0.91328 1.19611 0.97070 1.31847 1.00968 0.90504 1.25893 0.94761 0.94858 0.98529 1.69853 1.08412 1.33276 1.30383 0.86325 0.81126 0.79821 0.79816 1.18410 1.19761 1.20077 1.20957 1.03072 1.00821 0.99914 1.20319 0.94715 0.98052 0.95945 0.92810 0.90669 0.92958 0.90780 0.90966 0.74101 0.89624 0.92486 0.94369 0.91685 0.92193 0.89866 0.86882 0.91029 0.89207 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.73 37.16 0.36 -1.18 16 2 C -0.11 -1.27 5.18 -26.73 -0.14 -1.41 16 3 C 0.09 1.15 2.31 -68.87 -0.16 0.99 16 4 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 5 C 0.44 5.79 6.92 36.00 0.25 6.04 16 6 O -0.51 -8.31 12.60 -18.75 -0.24 -8.54 16 7 O -0.52 -5.18 13.42 -39.26 -0.53 -5.71 16 8 N -0.50 -7.81 4.24 -237.73 -1.01 -8.82 16 9 C 0.01 0.17 8.90 60.07 0.53 0.70 16 10 C 0.10 1.76 4.25 -4.98 -0.02 1.74 16 11 C -0.20 -4.41 5.09 -104.33 -0.53 -4.94 16 12 C -0.09 -2.17 8.14 -39.66 -0.32 -2.49 16 13 C -0.17 -4.36 8.69 -38.88 -0.34 -4.70 16 14 C 0.11 3.04 5.56 -106.83 -0.59 2.45 16 15 C -0.47 -12.52 9.05 -37.74 -0.34 -12.87 16 16 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 17 C 0.08 1.97 5.12 -17.34 -0.09 1.88 16 18 N -0.79 -20.89 11.05 55.55 0.61 -20.28 16 19 Si 0.90 18.90 29.60 -169.99 -5.03 13.87 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 24 C -0.07 -1.60 9.67 -39.66 -0.38 -1.99 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.92 5.84 -51.93 -0.30 0.61 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.40 2.43 9.10 45.56 0.41 2.85 16 31 H 0.09 1.53 6.30 -51.93 -0.33 1.20 16 32 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 33 H 0.04 0.63 6.00 -51.93 -0.31 0.32 16 34 H 0.06 1.12 5.40 -51.93 -0.28 0.84 16 35 H 0.06 1.19 5.64 -51.93 -0.29 0.90 16 36 H 0.08 1.86 7.95 -52.48 -0.42 1.44 16 37 H 0.11 3.09 6.25 -52.49 -0.33 2.76 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 40 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -29.67 324.04 -8.22 -37.89 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.76 Total: 8.53 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.15 Total: -21.81 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: -0.39 Total: -29.10 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.76 Total: -14.25 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.67 -8.22 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399119285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.695 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds