Wall clock time and date at job start Mon Mar 30 2020 08:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 H 1.09003 * 109.46788 * 55.40476 * 3 2 1 5 5 C 1.50697 * 109.47141 * 175.40107 * 3 2 1 6 6 O 1.20822 * 119.99758 * 110.37488 * 5 3 2 7 7 O 1.34230 * 120.00197 * 290.37369 * 5 3 2 8 8 N 1.46900 * 109.47144 * 295.40454 * 3 2 1 9 9 C 1.46902 * 110.99990 * 177.47798 * 8 3 2 10 10 C 1.46902 * 111.00092 * 301.43009 * 8 3 2 11 11 C 1.50694 * 109.47003 * 163.42770 * 10 8 3 12 12 C 1.38638 * 119.74992 * 90.00274 * 11 10 8 13 13 C 1.37611 * 120.24908 * 180.22989 * 12 11 10 14 14 C 1.40709 * 119.74689 * 359.52153 * 13 12 11 15 15 C 1.41395 * 120.24807 * 180.23282 * 14 13 12 16 16 H 1.08007 * 120.00496 * 205.24101 * 15 14 13 17 17 C 1.39949 * 120.00112 * 25.23111 * 15 14 13 18 18 N 1.30825 * 119.99383 * 18.55621 * 17 15 14 19 19 Si 1.86796 * 120.00367 * 198.55640 * 17 15 14 20 20 H 1.48500 * 109.47023 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47491 * 120.00351 * 19 17 15 22 22 H 1.48501 * 109.47098 * 240.00125 * 19 17 15 23 23 C 1.40714 * 119.51160 * 0.47543 * 14 13 12 24 24 C 1.37619 * 119.74620 * 359.75030 * 23 14 13 25 25 H 1.09001 * 109.47002 * 305.19828 * 1 2 3 26 26 H 1.09003 * 109.46906 * 65.20361 * 1 2 3 27 27 H 1.09002 * 109.46929 * 185.19878 * 1 2 3 28 28 H 1.09000 * 109.46791 * 240.00142 * 2 1 3 29 29 H 1.09001 * 109.47060 * 120.00294 * 2 1 3 30 30 H 0.96700 * 116.99880 * 180.02562 * 7 5 3 31 31 H 1.08993 * 109.47124 * 183.95210 * 9 8 3 32 32 H 1.09007 * 109.46786 * 303.95443 * 9 8 3 33 33 H 1.09004 * 109.46866 * 63.94808 * 9 8 3 34 34 H 1.09001 * 109.46497 * 43.42908 * 10 8 3 35 35 H 1.09000 * 109.46756 * 283.43404 * 10 8 3 36 36 H 1.08005 * 119.87329 * 359.95609 * 12 11 10 37 37 H 1.08000 * 120.12608 * 179.72334 * 13 12 11 38 38 H 0.97008 * 119.99504 * 179.97438 * 18 17 15 39 39 H 1.08006 * 120.12933 * 179.73075 * 23 14 13 40 40 H 1.07998 * 119.88085 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6110 1.9795 0.8460 5 6 3.5427 1.4440 0.1139 6 8 4.2196 1.7826 -0.8279 7 8 4.1292 1.0692 1.2617 8 7 1.6431 2.1022 -1.2511 9 6 2.0647 3.5094 -1.2610 10 6 2.1762 1.3847 -2.4168 11 6 1.4394 1.8225 -3.6562 12 6 1.9103 2.8988 -4.3924 13 6 1.2428 3.3103 -5.5233 14 6 0.0840 2.6279 -5.9372 15 6 -0.6073 3.0386 -7.1002 16 1 -1.6604 2.8235 -7.2069 17 6 0.0729 3.7239 -8.1132 18 7 1.3788 3.6739 -8.1738 19 14 -0.8837 4.7101 -9.3788 20 1 -2.3370 4.6060 -9.0919 21 1 -0.4668 6.1339 -9.3151 22 1 -0.6079 4.1739 -10.7358 23 6 -0.3848 1.5368 -5.1823 24 6 0.2961 1.1456 -4.0521 25 1 -0.3633 0.5924 0.8398 26 1 -0.3633 0.4310 -0.9330 27 1 -0.3633 -1.0235 0.0931 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.0957 1.0869 1.2870 31 1 1.6977 3.9923 -2.1665 32 1 1.6563 4.0172 -0.3872 33 1 3.1532 3.5626 -1.2363 34 1 2.0436 0.3121 -2.2750 35 1 3.2374 1.6082 -2.5268 36 1 2.8018 3.4190 -4.0746 37 1 1.6089 4.1518 -6.0927 38 1 1.8502 4.1486 -8.8762 39 1 -1.2757 1.0086 -5.4884 40 1 -0.0616 0.3083 -3.4713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399119285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:16:11 Heat of formation + Delta-G solvation = -88.039887 kcal Electronic energy + Delta-G solvation = -21727.179313 eV Core-core repulsion = 18505.743275 eV Total energy + Delta-G solvation = -3221.436038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83649 -39.66324 -38.28551 -36.92554 -35.61931 -34.00549 -32.07966 -31.15601 -29.05498 -28.56659 -26.34397 -24.26227 -23.46102 -22.77342 -21.89043 -20.84902 -19.19671 -19.14161 -17.84704 -17.27199 -16.90587 -16.71743 -15.99747 -15.91476 -15.58232 -15.16679 -14.66536 -14.53134 -14.13736 -13.99807 -13.79813 -13.40636 -13.35541 -13.00549 -12.88407 -12.82622 -12.63400 -12.56170 -12.44790 -12.13439 -12.03329 -11.90273 -11.69463 -11.54028 -11.31857 -11.20757 -10.96155 -9.41384 -9.25615 -9.10337 -8.62621 -6.30274 0.96275 1.14705 1.19146 1.37900 1.50003 1.53643 2.13246 2.21692 2.66144 3.03397 3.74914 3.86722 4.06282 4.11841 4.27009 4.39931 4.50023 4.53489 4.58894 4.68053 4.69246 4.72952 4.91527 4.98379 5.06072 5.09170 5.19034 5.20220 5.30539 5.38728 5.50606 5.61628 5.65163 5.74359 5.94566 5.95782 6.09303 6.14412 6.33455 6.42893 6.73706 6.97312 6.98509 7.07879 8.35456 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.004000 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.069087 B = 6998.581333 C = 7481.187963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.089 3.911 4 H 0.140 0.860 5 C 0.451 3.549 6 O -0.545 6.545 7 O -0.511 6.511 8 N -0.500 5.500 9 C 0.015 3.985 10 C 0.108 3.892 11 C -0.189 4.189 12 C -0.095 4.095 13 C -0.189 4.189 14 C 0.081 3.919 15 C -0.504 4.504 16 H 0.074 0.926 17 C 0.035 3.965 18 N -0.829 5.829 19 Si 0.981 3.019 20 H -0.257 1.257 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.242 4.242 24 C -0.070 4.070 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.421 0.579 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.286 0.714 39 H 0.096 0.904 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -4.179 16.841 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.021 4.021 4 H 0.157 0.843 5 C 0.293 3.707 6 O -0.436 6.436 7 O -0.323 6.323 8 N -0.223 5.223 9 C -0.133 4.133 10 C -0.018 4.018 11 C -0.191 4.191 12 C -0.113 4.113 13 C -0.209 4.209 14 C 0.078 3.922 15 C -0.534 4.534 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.456 5.456 19 Si 0.801 3.199 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.190 1.190 23 C -0.261 4.261 24 C -0.088 4.088 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.282 0.718 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.526 -4.048 16.432 16.992 hybrid contribution 1.526 0.716 -1.036 1.978 sum 3.052 -3.331 15.396 16.045 Atomic orbital electron populations 1.21615 0.93323 1.02093 1.02564 1.21632 0.98312 0.91448 1.03330 1.22123 0.84227 1.00095 0.95704 0.84255 1.25654 0.94096 0.71475 0.79442 1.90709 1.67009 1.45867 1.40034 1.84553 1.30023 1.79510 1.38170 1.62575 1.56629 1.02579 1.00533 1.22520 0.98654 0.89023 1.03091 1.20998 0.95975 0.97655 0.87184 1.19253 0.99753 1.00984 0.99109 1.20675 0.98194 0.97155 0.95326 1.21161 0.99830 1.02117 0.97793 1.17936 0.91956 0.89980 0.92283 1.19849 0.97212 1.34217 1.02086 0.90746 1.26754 0.95613 0.95195 1.00325 1.69910 1.09977 1.34114 1.31556 0.85186 0.79470 0.78130 0.77067 1.18063 1.18998 1.19035 1.21180 1.03704 1.00563 1.00683 1.20627 0.94334 0.98601 0.95262 0.91498 0.93337 0.91584 0.92107 0.88473 0.71827 0.92409 0.89662 0.95197 0.90164 0.93682 0.89187 0.88899 0.90319 0.88537 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.73 71.98 0.70 -1.86 16 2 C -0.11 -2.06 5.18 30.59 0.16 -1.90 16 3 C 0.09 1.96 2.31 44.17 0.10 2.06 16 4 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 5 C 0.45 10.55 6.92 71.24 0.49 11.04 16 6 O -0.55 -17.13 12.60 21.97 0.28 -16.85 16 7 O -0.51 -8.26 13.42 -51.42 -0.69 -8.95 16 8 N -0.50 -14.86 4.24 -906.04 -3.84 -18.70 16 9 C 0.02 0.46 8.90 127.69 1.14 1.60 16 10 C 0.11 3.83 4.25 85.55 0.36 4.19 16 11 C -0.19 -8.26 5.09 -19.67 -0.10 -8.36 16 12 C -0.09 -4.61 8.14 22.22 0.18 -4.43 16 13 C -0.19 -10.45 8.69 22.73 0.20 -10.25 16 14 C 0.08 4.52 5.56 -21.29 -0.12 4.41 16 15 C -0.50 -28.20 9.05 23.46 0.21 -27.99 16 16 H 0.07 4.02 7.91 -2.91 -0.02 4.00 16 17 C 0.04 1.85 5.12 85.26 0.44 2.29 16 18 N -0.83 -45.25 11.05 21.83 0.24 -45.01 16 19 Si 0.98 39.50 29.60 68.60 2.03 41.53 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 23 C -0.24 -12.19 9.80 22.73 0.22 -11.97 16 24 C -0.07 -3.09 9.67 22.22 0.21 -2.87 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.17 7.89 -2.39 -0.02 1.15 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.32 5.84 -2.39 -0.01 1.31 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.42 3.69 9.10 -74.06 -0.67 3.02 16 31 H 0.06 2.07 6.30 -2.39 -0.02 2.06 16 32 H 0.08 2.07 8.13 -2.38 -0.02 2.06 16 33 H 0.03 0.96 6.00 -2.38 -0.01 0.95 16 34 H 0.08 2.60 5.40 -2.39 -0.01 2.59 16 35 H 0.05 1.77 5.64 -2.39 -0.01 1.76 16 36 H 0.09 4.16 7.95 -2.91 -0.02 4.14 16 37 H 0.09 5.40 6.25 -2.91 -0.02 5.38 16 38 H 0.29 14.10 8.30 -92.70 -0.77 13.33 16 39 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -66.58 324.04 2.60 -63.99 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.38 Total: 28.06 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 4.20 Total: -44.05 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -3.60 Total: -63.72 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.41 Total: -25.81 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -66.58 2.60 -63.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399119285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.054 kcal (2) G-P(sol) polarization free energy of solvation -66.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds