Wall clock time and date at job start Mon Mar 30 2020 07:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38302 * 119.92493 * 2 1 4 4 C 1.38093 * 120.06703 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.03550 * 180.02562 * 4 3 2 6 6 C 1.38892 * 119.92864 * 0.02562 * 4 3 2 7 7 N 1.39925 * 120.06783 * 180.02562 * 6 4 3 8 8 C 1.34781 * 120.00020 * 204.76704 * 7 6 4 9 9 O 1.21285 * 120.00095 * 5.51224 * 8 7 6 10 10 C 1.50696 * 119.99824 * 185.52050 * 8 7 6 11 11 H 1.09000 * 109.47837 * 59.99903 * 10 8 7 12 12 C 1.53004 * 109.47326 * 299.99416 * 10 8 7 13 13 C 1.50713 * 109.46930 * 179.97438 * 10 8 7 14 14 H 1.07997 * 119.99880 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99558 * 180.02562 * 13 10 8 16 16 N 1.31504 * 120.00596 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99369 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47034 * 59.99951 * 17 15 13 19 19 H 1.48500 * 109.47104 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47186 * 299.99942 * 17 15 13 21 21 C 1.38850 * 119.86369 * 359.95555 * 6 4 3 22 22 C 1.38138 * 119.92568 * 0.04264 * 21 6 4 23 23 C 1.50691 * 119.96429 * 179.97438 * 22 21 6 24 24 O 1.42898 * 109.47425 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47007 * 270.01738 * 1 2 3 26 26 H 1.08992 * 109.47430 * 30.02007 * 1 2 3 27 27 H 1.08998 * 109.46733 * 150.02305 * 1 2 3 28 28 H 1.07995 * 119.96833 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.46546 * 89.99841 * 5 4 3 30 30 H 1.08998 * 109.47336 * 210.00186 * 5 4 3 31 31 H 1.08999 * 109.47121 * 330.00563 * 5 4 3 32 32 H 0.97003 * 120.00619 * 24.76506 * 7 6 4 33 33 H 1.08998 * 109.46894 * 300.00207 * 12 10 8 34 34 H 1.08997 * 109.46839 * 60.00307 * 12 10 8 35 35 H 1.08993 * 109.46963 * 180.02562 * 12 10 8 36 36 H 0.97002 * 120.00365 * 180.02562 * 16 15 13 37 37 H 1.07995 * 120.03856 * 180.31901 * 21 6 4 38 38 H 1.08999 * 109.47041 * 120.00085 * 23 22 21 39 39 H 1.09006 * 109.47381 * 240.00184 * 23 22 21 40 40 H 0.96701 * 114.00784 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.3290 2.5086 0.0011 6 6 4.2739 0.0001 0.0005 7 7 5.6731 0.0002 0.0016 8 6 6.3475 -1.0595 -0.4873 9 8 5.7457 -1.9685 -1.0188 10 6 7.8491 -1.1147 -0.3734 11 1 8.1353 -1.0828 0.6778 12 6 8.4605 0.0819 -1.1050 13 6 8.3531 -2.3933 -0.9921 14 1 7.6557 -3.0957 -1.4241 15 6 9.7044 -2.6666 -1.0056 16 7 10.5536 -1.8116 -0.4791 17 14 10.3290 -4.2517 -1.7718 18 1 9.9395 -4.2961 -3.2042 19 1 11.8086 -4.3068 -1.6586 20 1 9.7351 -5.4126 -1.0612 21 6 3.5783 -1.2016 0.0009 22 6 2.1969 -1.1982 0.0004 23 6 1.4410 -2.5019 0.0003 24 8 2.3676 -3.5897 0.0013 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6553 2.1329 -0.0004 29 1 4.5096 2.8233 1.0290 30 1 5.2818 2.3802 -0.5124 31 1 3.7387 3.2673 -0.5127 32 1 6.1579 0.7628 0.3542 33 1 8.1744 0.0499 -2.1563 34 1 8.0960 1.0064 -0.6572 35 1 9.5466 0.0417 -1.0230 36 1 11.5043 -2.0038 -0.4890 37 1 4.1165 -2.1378 0.0061 38 1 0.8140 -2.5584 0.8900 39 1 0.8146 -2.5586 -0.8900 40 1 1.9502 -4.4620 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597551922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:02 Heat of formation + Delta-G solvation = -73.624457 kcal Electronic energy + Delta-G solvation = -21627.051224 eV Core-core repulsion = 18406.240286 eV Total energy + Delta-G solvation = -3220.810938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25117 -38.47073 -36.66463 -34.70798 -33.81860 -32.55634 -31.35718 -30.15365 -28.32928 -26.44416 -25.16462 -24.40585 -22.83271 -21.85559 -19.86973 -19.39083 -17.33488 -17.08809 -16.22972 -15.73165 -15.11668 -14.87495 -14.76059 -14.41586 -14.06648 -13.83075 -13.59826 -13.30791 -13.13829 -12.98867 -12.64004 -12.44855 -12.03361 -11.83790 -11.68404 -11.43728 -11.12887 -10.97171 -10.76785 -10.72608 -10.64373 -10.32355 -10.20142 -9.97027 -9.67702 -9.01266 -8.63659 -8.36907 -8.22198 -7.44637 -6.03991 -4.07362 1.50232 1.70610 3.37261 3.39316 3.44938 3.51946 3.78781 4.09234 4.29403 4.47384 4.88151 4.94889 5.17710 5.22385 5.29498 5.30078 5.37966 5.43443 5.49856 5.59286 5.68618 5.76517 5.88189 5.95096 6.15621 6.19175 6.40558 6.54893 6.59916 6.75154 6.79159 6.85508 6.88836 7.01914 7.42392 7.51009 7.72474 7.74570 7.95654 8.08591 8.35754 9.01031 9.10033 9.58150 11.03705 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.004834 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.733782 B = 5791.349001 C = 6929.093807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.129 4.129 5 C -0.112 4.112 6 C 0.161 3.839 7 N -0.684 5.684 8 C 0.515 3.485 9 O -0.514 6.514 10 C 0.031 3.969 11 H 0.056 0.944 12 C -0.134 4.134 13 C -0.502 4.502 14 H 0.075 0.925 15 C 0.059 3.941 16 N -0.897 5.897 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.106 4.106 22 C -0.082 4.082 23 C 0.122 3.878 24 O -0.559 6.559 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.406 0.594 33 H 0.033 0.967 34 H 0.011 0.989 35 H 0.096 0.904 36 H 0.262 0.738 37 H 0.161 0.839 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.233 6.454 3.068 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.119 4.119 4 C -0.132 4.132 5 C -0.168 4.168 6 C 0.064 3.936 7 N -0.328 5.328 8 C 0.306 3.694 9 O -0.387 6.387 10 C 0.010 3.990 11 H 0.074 0.926 12 C -0.192 4.192 13 C -0.541 4.541 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.536 5.536 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.126 4.126 22 C -0.083 4.083 23 C 0.045 3.955 24 O -0.364 6.364 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.242 0.758 33 H 0.052 0.948 34 H 0.030 0.970 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.178 0.822 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.915 6.258 2.706 18.238 hybrid contribution 0.198 -0.742 -0.219 0.798 sum -16.717 5.516 2.487 17.779 Atomic orbital electron populations 1.20711 0.91685 1.02324 1.01773 1.19413 0.95460 0.92319 1.04601 1.20488 0.92596 0.96979 1.01826 1.19600 0.93922 0.93838 1.05819 1.20689 1.00164 0.93961 1.02024 1.17853 0.83872 0.93332 0.98503 1.44155 1.03721 1.22322 1.62634 1.22293 0.92403 0.79707 0.75028 1.90538 1.70345 1.36900 1.40958 1.18915 0.83457 0.97565 0.99071 0.92608 1.21774 1.05345 0.93823 0.98288 1.21086 0.92253 1.02966 1.37758 0.90697 1.24936 0.96672 0.97159 0.95366 1.69851 1.02593 1.35606 1.45558 0.86485 0.77136 0.83494 0.79912 1.20175 1.21371 1.20135 1.21364 0.93304 0.98957 0.99019 1.19387 0.93775 0.93056 1.02053 1.20817 0.90230 0.85058 0.99406 1.86636 1.35590 1.16498 1.97648 0.91647 0.91844 0.92001 0.86162 0.91421 0.91577 0.91498 0.75793 0.94822 0.96974 0.88579 0.92856 0.82161 0.92772 0.92678 0.77603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.60 36.01 0.35 -0.68 16 2 C -0.12 -1.57 5.88 -104.59 -0.62 -2.19 16 3 C -0.10 -1.33 9.35 -39.61 -0.37 -1.71 16 4 C -0.13 -1.92 5.90 -104.43 -0.62 -2.54 16 5 C -0.11 -1.31 9.45 36.01 0.34 -0.97 16 6 C 0.16 2.94 6.41 -83.69 -0.54 2.40 16 7 N -0.68 -12.98 4.90 -9.86 -0.05 -13.03 16 8 C 0.51 12.07 6.95 -10.99 -0.08 12.00 16 9 O -0.51 -13.62 12.63 5.55 0.07 -13.55 16 10 C 0.03 0.78 2.65 -92.92 -0.25 0.53 16 11 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 12 C -0.13 -3.08 8.87 37.16 0.33 -2.75 16 13 C -0.50 -14.30 8.38 -34.43 -0.29 -14.59 16 14 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.90 -25.13 11.32 55.43 0.63 -24.50 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 C -0.11 -2.07 8.04 -39.39 -0.32 -2.38 16 22 C -0.08 -1.30 5.88 -104.65 -0.62 -1.92 16 23 C 0.12 1.57 6.15 36.00 0.22 1.79 16 24 O -0.56 -8.26 12.14 -35.23 -0.43 -8.69 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.06 0.53 6.63 -51.93 -0.34 0.19 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.81 6.99 -51.93 -0.36 0.45 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.41 6.55 6.67 -40.82 -0.27 6.27 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.01 0.22 7.45 -51.93 -0.39 -0.17 16 35 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.16 3.66 4.75 -52.49 -0.25 3.41 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.61 7.49 -51.93 -0.39 0.22 16 40 H 0.38 3.43 9.12 45.56 0.42 3.85 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -33.25 325.79 -7.20 -40.44 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.77 Total: 8.92 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.54 Total: -11.43 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.58 Total: -37.53 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.36 Total: -22.24 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.25 -7.20 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597551922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.181 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds