Wall clock time and date at job start Mon Mar 30 2020 07:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38302 * 119.92493 * 2 1 4 4 C 1.38093 * 120.06703 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.03550 * 180.02562 * 4 3 2 6 6 C 1.38892 * 119.92864 * 0.02562 * 4 3 2 7 7 N 1.39925 * 120.06783 * 180.02562 * 6 4 3 8 8 C 1.34781 * 120.00020 * 204.76704 * 7 6 4 9 9 O 1.21285 * 120.00095 * 5.51224 * 8 7 6 10 10 C 1.50696 * 119.99824 * 185.52050 * 8 7 6 11 11 H 1.09000 * 109.47837 * 59.99903 * 10 8 7 12 12 C 1.53004 * 109.47326 * 299.99416 * 10 8 7 13 13 C 1.50713 * 109.46930 * 179.97438 * 10 8 7 14 14 H 1.07997 * 119.99880 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99558 * 180.02562 * 13 10 8 16 16 N 1.31504 * 120.00596 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99369 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47034 * 59.99951 * 17 15 13 19 19 H 1.48500 * 109.47104 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47186 * 299.99942 * 17 15 13 21 21 C 1.38850 * 119.86369 * 359.95555 * 6 4 3 22 22 C 1.38138 * 119.92568 * 0.04264 * 21 6 4 23 23 C 1.50691 * 119.96429 * 179.97438 * 22 21 6 24 24 O 1.42898 * 109.47425 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47007 * 270.01738 * 1 2 3 26 26 H 1.08992 * 109.47430 * 30.02007 * 1 2 3 27 27 H 1.08998 * 109.46733 * 150.02305 * 1 2 3 28 28 H 1.07995 * 119.96833 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.46546 * 89.99841 * 5 4 3 30 30 H 1.08998 * 109.47336 * 210.00186 * 5 4 3 31 31 H 1.08999 * 109.47121 * 330.00563 * 5 4 3 32 32 H 0.97003 * 120.00619 * 24.76506 * 7 6 4 33 33 H 1.08998 * 109.46894 * 300.00207 * 12 10 8 34 34 H 1.08997 * 109.46839 * 60.00307 * 12 10 8 35 35 H 1.08993 * 109.46963 * 180.02562 * 12 10 8 36 36 H 0.97002 * 120.00365 * 180.02562 * 16 15 13 37 37 H 1.07995 * 120.03856 * 180.31901 * 21 6 4 38 38 H 1.08999 * 109.47041 * 120.00085 * 23 22 21 39 39 H 1.09006 * 109.47381 * 240.00184 * 23 22 21 40 40 H 0.96701 * 114.00784 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.3290 2.5086 0.0011 6 6 4.2739 0.0001 0.0005 7 7 5.6731 0.0002 0.0016 8 6 6.3475 -1.0595 -0.4873 9 8 5.7457 -1.9685 -1.0188 10 6 7.8491 -1.1147 -0.3734 11 1 8.1353 -1.0828 0.6778 12 6 8.4605 0.0819 -1.1050 13 6 8.3531 -2.3933 -0.9921 14 1 7.6557 -3.0957 -1.4241 15 6 9.7044 -2.6666 -1.0056 16 7 10.5536 -1.8116 -0.4791 17 14 10.3290 -4.2517 -1.7718 18 1 9.9395 -4.2961 -3.2042 19 1 11.8086 -4.3068 -1.6586 20 1 9.7351 -5.4126 -1.0612 21 6 3.5783 -1.2016 0.0009 22 6 2.1969 -1.1982 0.0004 23 6 1.4410 -2.5019 0.0003 24 8 2.3676 -3.5897 0.0013 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6553 2.1329 -0.0004 29 1 4.5096 2.8233 1.0290 30 1 5.2818 2.3802 -0.5124 31 1 3.7387 3.2673 -0.5127 32 1 6.1579 0.7628 0.3542 33 1 8.1744 0.0499 -2.1563 34 1 8.0960 1.0064 -0.6572 35 1 9.5466 0.0417 -1.0230 36 1 11.5043 -2.0038 -0.4890 37 1 4.1165 -2.1378 0.0061 38 1 0.8140 -2.5584 0.8900 39 1 0.8146 -2.5586 -0.8900 40 1 1.9502 -4.4620 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597551922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:01 Heat of formation + Delta-G solvation = -97.054244 kcal Electronic energy + Delta-G solvation = -21628.067215 eV Core-core repulsion = 18406.240286 eV Total energy + Delta-G solvation = -3221.826929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67043 -39.94392 -37.80113 -36.09463 -35.85826 -33.80383 -32.91074 -31.76439 -29.33745 -27.56031 -27.21780 -25.60451 -24.43759 -23.20095 -21.16860 -20.98552 -18.61577 -18.50267 -18.15231 -17.39325 -16.65702 -16.26035 -15.94736 -15.90538 -15.60662 -15.14699 -14.79993 -14.67538 -14.45505 -14.30355 -13.90941 -13.52172 -13.39945 -13.02536 -12.95026 -12.84761 -12.80357 -12.63582 -12.58193 -12.25703 -12.14401 -12.02513 -11.79693 -11.36960 -11.10655 -10.94088 -10.61013 -10.27918 -9.45487 -8.74434 -8.18113 -6.28794 0.31234 0.49102 1.39461 1.41283 1.49886 1.82436 2.23135 2.46354 2.82699 3.11643 3.37953 3.82902 3.97413 4.09232 4.16128 4.33293 4.35118 4.48921 4.54362 4.61429 4.68228 4.77653 4.82412 4.87143 4.91520 4.92925 5.03318 5.09490 5.15370 5.27616 5.42204 5.46670 5.57192 5.63406 5.71138 5.76219 5.90847 6.15777 6.19845 6.62504 6.79384 6.94797 7.32380 7.42817 8.87819 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.004834 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.733782 B = 5791.349001 C = 6929.093807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C -0.100 4.100 4 C -0.123 4.123 5 C -0.112 4.112 6 C 0.121 3.879 7 N -0.667 5.667 8 C 0.516 3.484 9 O -0.555 6.555 10 C 0.028 3.972 11 H 0.044 0.956 12 C -0.121 4.121 13 C -0.532 4.532 14 H 0.047 0.953 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.272 1.272 20 H -0.277 1.277 21 C -0.141 4.141 22 C -0.101 4.101 23 C 0.119 3.881 24 O -0.595 6.595 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.418 0.582 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.266 0.734 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.495 8.497 3.287 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.107 4.107 3 C -0.118 4.118 4 C -0.126 4.126 5 C -0.168 4.168 6 C 0.026 3.974 7 N -0.312 5.312 8 C 0.306 3.694 9 O -0.432 6.432 10 C 0.007 3.993 11 H 0.062 0.938 12 C -0.179 4.179 13 C -0.570 4.570 14 H 0.066 0.934 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.782 3.218 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.203 1.203 21 C -0.162 4.162 22 C -0.102 4.102 23 C 0.043 3.957 24 O -0.403 6.403 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.178 0.822 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.257 0.743 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -19.201 8.338 2.951 21.140 hybrid contribution 0.757 -1.336 -0.236 1.553 sum -18.445 7.002 2.715 19.915 Atomic orbital electron populations 1.20817 0.88258 1.03902 1.03370 1.19938 0.97848 0.91293 1.01594 1.21025 0.92029 0.98631 1.00131 1.19983 0.94937 0.93675 1.03968 1.20785 0.99763 0.92797 1.03480 1.18092 0.83041 0.94612 1.01651 1.43709 1.04580 1.21251 1.61666 1.21899 0.91875 0.80389 0.75213 1.90526 1.70842 1.38681 1.43173 1.18834 0.85055 0.97274 0.98182 0.93807 1.21582 1.03757 0.94780 0.97740 1.21208 0.92532 1.04332 1.38931 0.93444 1.25575 0.96574 0.99966 0.95612 1.69924 1.02841 1.36547 1.45513 0.85639 0.77312 0.79956 0.78891 1.20191 1.19618 1.20286 1.21177 0.95157 0.97780 1.02057 1.19824 0.92682 0.95702 1.01944 1.21031 0.89775 0.83341 1.01596 1.86612 1.37611 1.18301 1.97825 0.89822 0.89809 0.90999 0.82197 0.89543 0.92467 0.88932 0.74325 0.95763 0.92843 0.90604 0.92438 0.86661 0.89949 0.90584 0.75323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.60 71.24 0.68 -0.85 16 2 C -0.11 -2.54 5.88 -19.84 -0.12 -2.65 16 3 C -0.10 -2.30 9.35 22.25 0.21 -2.09 16 4 C -0.12 -3.42 5.90 -19.74 -0.12 -3.54 16 5 C -0.11 -2.28 9.45 71.24 0.67 -1.60 16 6 C 0.12 4.49 6.41 38.15 0.24 4.74 16 7 N -0.67 -26.07 4.90 -303.51 -1.49 -27.56 16 8 C 0.52 25.54 6.95 87.66 0.61 26.15 16 9 O -0.56 -31.67 12.63 -3.05 -0.04 -31.71 16 10 C 0.03 1.45 2.65 -12.28 -0.03 1.42 16 11 H 0.04 2.37 8.14 -2.39 -0.02 2.35 16 12 C -0.12 -5.61 8.87 71.98 0.64 -4.97 16 13 C -0.53 -31.71 8.38 25.60 0.21 -31.50 16 14 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 15 C 0.02 1.27 5.30 84.66 0.45 1.72 16 16 N -0.91 -51.60 11.32 21.45 0.24 -51.36 16 17 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 C -0.14 -5.75 8.04 22.39 0.18 -5.57 16 22 C -0.10 -3.16 5.88 -19.89 -0.12 -3.27 16 23 C 0.12 2.96 6.15 71.23 0.44 3.40 16 24 O -0.59 -18.34 12.14 -148.98 -1.81 -20.14 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 27 H 0.07 0.92 6.63 -2.39 -0.02 0.91 16 28 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.06 1.28 6.99 -2.39 -0.02 1.26 16 31 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 32 H 0.42 13.50 6.67 -92.71 -0.62 12.88 16 33 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.98 7.45 -2.39 -0.02 1.96 16 35 H 0.08 3.85 6.07 -2.39 -0.01 3.84 16 36 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.12 5.75 4.75 -2.91 -0.01 5.74 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.53 7.49 -2.38 -0.02 1.51 16 40 H 0.40 7.51 9.12 -74.06 -0.68 6.84 16 Total: -1.00 -77.22 325.79 2.67 -74.55 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.22 Total: 26.98 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 3.96 Total: -18.64 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.25 Total: -78.92 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -1.85 Total: -51.85 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.22 2.67 -74.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597551922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.503 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds