Wall clock time and date at job start Mon Mar 30 2020 08:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 H 1.09001 * 110.33385 * 55.79562 * 3 2 1 5 5 C 1.54477 * 110.37455 * 178.16380 * 3 2 1 6 6 C 1.54508 * 104.06369 * 142.80977 * 5 3 2 7 7 H 1.09005 * 110.62851 * 241.29952 * 6 5 3 8 8 N 1.46502 * 110.51025 * 118.64768 * 6 5 3 9 9 C 1.39671 * 119.99986 * 158.90797 * 8 6 5 10 10 C 1.39008 * 120.03938 * 359.71720 * 9 8 6 11 11 C 1.38149 * 120.05894 * 179.76957 * 10 9 8 12 12 C 1.38176 * 120.14518 * 0.51285 * 11 10 9 13 13 C 1.38908 * 120.07832 * 359.74396 * 12 11 10 14 14 O 1.35751 * 120.03587 * 180.02562 * 13 12 11 15 15 C 1.34824 * 117.00330 * 174.43775 * 14 13 12 16 16 H 1.07997 * 120.00306 * 5.05379 * 15 14 13 17 17 C 1.38659 * 119.99947 * 185.05453 * 15 14 13 18 18 N 1.31557 * 119.99733 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47210 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47183 * 119.99930 * 19 17 15 22 22 H 1.48500 * 109.47172 * 240.00324 * 19 17 15 23 23 C 1.38757 * 120.04155 * 179.97438 * 9 8 6 24 24 C 1.54474 * 104.06469 * 0.02562 * 6 5 3 25 25 O 1.44428 * 110.37235 * 293.54698 * 3 2 1 26 26 H 1.09002 * 109.46526 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47082 * 300.00119 * 1 2 3 28 28 H 1.09001 * 109.46758 * 60.00272 * 1 2 3 29 29 H 1.09004 * 109.47537 * 240.00155 * 2 1 3 30 30 H 1.08998 * 109.47460 * 119.99910 * 2 1 3 31 31 H 1.09005 * 110.51651 * 261.45458 * 5 3 2 32 32 H 1.09001 * 110.51380 * 24.16886 * 5 3 2 33 33 H 0.96999 * 120.00117 * 338.89934 * 8 6 5 34 34 H 1.07999 * 119.96797 * 0.02562 * 10 9 8 35 35 H 1.08007 * 119.92852 * 180.27717 * 11 10 9 36 36 H 1.07997 * 119.95694 * 179.76644 * 12 11 10 37 37 H 0.96999 * 119.99621 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.06687 * 359.97438 * 23 9 8 39 39 H 1.09003 * 110.37819 * 217.18985 * 24 6 5 40 40 H 1.09004 * 110.47017 * 94.89613 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6246 1.9911 0.8453 5 6 3.5839 1.4671 0.0464 6 6 3.9679 2.6571 -0.8611 7 1 4.5676 2.3180 -1.7059 8 7 4.6920 3.6744 -0.0948 9 6 5.5047 4.5988 -0.7548 10 6 5.6318 4.5508 -2.1382 11 6 6.4318 5.4680 -2.7919 12 6 7.1162 6.4289 -2.0725 13 6 6.9977 6.4789 -0.6894 14 8 7.6701 7.4236 0.0165 15 6 7.4224 7.4906 1.3401 16 1 6.7788 6.7596 1.8067 17 6 7.9940 8.4981 2.1023 18 7 8.7783 9.3884 1.5339 19 14 7.6514 8.5906 3.9362 20 1 6.7464 7.4800 4.3273 21 1 8.9286 8.4747 4.6848 22 1 7.0071 9.8901 4.2545 23 6 6.1904 5.5630 -0.0299 24 6 2.6106 3.2112 -1.3480 25 8 1.6977 2.0968 -1.2412 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9329 1.6356 1.0652 32 1 3.9928 0.5375 -0.3495 33 1 4.6068 3.7059 0.8709 34 1 5.1013 3.7984 -2.7029 35 1 6.5255 5.4315 -3.8672 36 1 7.7438 7.1420 -2.5862 37 1 9.1778 10.0934 2.0670 38 1 6.0964 5.6001 1.0454 39 1 2.6853 3.5421 -2.3839 40 1 2.2835 4.0328 -0.7107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688511190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:33 Heat of formation + Delta-G solvation = -51.523463 kcal Electronic energy + Delta-G solvation = -20995.410237 eV Core-core repulsion = 17775.557670 eV Total energy + Delta-G solvation = -3219.852567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.00085 -38.87894 -36.89425 -34.68302 -33.73433 -32.21675 -31.10384 -29.08762 -28.17859 -27.21019 -25.26308 -23.87869 -22.12008 -21.57701 -21.18763 -20.23458 -17.93426 -17.50296 -16.52946 -15.93682 -15.70357 -15.50308 -14.89930 -14.49387 -14.21562 -13.95464 -13.75889 -13.58553 -13.35286 -13.24608 -12.85873 -12.53611 -12.33689 -11.99620 -11.79706 -11.63848 -11.43267 -11.22232 -11.12271 -10.91426 -10.86866 -10.74232 -10.52885 -10.38591 -9.94379 -9.42112 -9.37982 -8.77079 -7.37956 -6.81758 -6.41928 -4.01126 2.36286 2.53708 3.13126 3.14085 3.19335 3.50807 3.94423 3.98947 4.34285 4.42630 4.67535 4.80451 4.87071 4.97798 5.06464 5.12260 5.15386 5.30887 5.36150 5.49326 5.57252 5.66559 5.68409 5.70993 5.76446 5.79493 5.90785 5.99229 6.04901 6.26384 6.33772 6.55955 6.62895 6.72903 7.01654 7.14707 7.37583 7.47316 7.64167 7.97640 8.04100 8.15313 9.04277 9.76805 10.76530 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021455 B = 0.003755 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.758623 B = 7454.217053 C = 8510.371122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.068 0.932 5 C -0.158 4.158 6 C 0.128 3.872 7 H 0.092 0.908 8 N -0.745 5.745 9 C 0.246 3.754 10 C -0.280 4.280 11 C -0.040 4.040 12 C -0.235 4.235 13 C 0.189 3.811 14 O -0.178 6.178 15 C -0.389 4.389 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.300 4.300 24 C 0.029 3.971 25 O -0.371 6.371 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.395 0.605 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.269 0.731 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 -15.942 -2.159 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.086 0.914 5 C -0.197 4.197 6 C 0.021 3.979 7 H 0.110 0.890 8 N -0.378 5.378 9 C 0.146 3.854 10 C -0.303 4.303 11 C -0.059 4.059 12 C -0.256 4.256 13 C 0.135 3.865 14 O -0.081 6.081 15 C -0.465 4.465 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.324 4.324 24 C -0.049 4.049 25 O -0.289 6.289 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.171 -15.739 -2.439 20.045 hybrid contribution -0.037 0.173 1.494 1.504 sum -12.207 -15.566 -0.946 19.804 Atomic orbital electron populations 1.21721 0.95272 1.01457 1.02354 1.21594 0.96773 0.94443 1.02684 1.23019 0.93247 0.94154 0.87989 0.91404 1.23248 0.96201 0.99110 1.01107 1.22084 0.92961 0.87788 0.95083 0.88996 1.44590 1.51517 1.33664 1.07979 1.17471 0.88742 0.87846 0.91362 1.20097 1.11642 1.06348 0.92176 1.20385 0.94290 0.93141 0.98043 1.20056 1.09282 1.04823 0.91388 1.19069 0.88533 0.87788 0.91135 1.83988 1.55720 1.46867 1.21537 1.21341 1.31088 1.13705 0.80388 0.89155 1.25278 0.96158 0.94865 1.00293 1.70051 1.29196 1.14355 1.36319 0.85665 0.78419 0.78570 0.80836 1.19252 1.20200 1.20179 1.20503 1.09568 1.02215 1.00097 1.24052 0.88519 0.89617 1.02745 1.89137 1.56887 1.43115 1.39785 0.92810 0.92882 0.91960 0.91060 0.90766 0.89884 0.89726 0.77004 0.87821 0.87147 0.86872 0.92146 0.85799 0.88735 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.83 37.16 0.37 -0.81 16 2 C -0.12 -0.94 5.57 -26.73 -0.15 -1.09 16 3 C 0.07 0.72 3.27 -25.96 -0.08 0.63 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.16 -1.51 6.39 -25.16 -0.16 -1.67 16 6 C 0.13 1.52 3.07 -66.36 -0.20 1.32 16 7 H 0.09 1.12 6.60 -51.93 -0.34 0.78 16 8 N -0.74 -10.70 5.29 -50.67 -0.27 -10.96 16 9 C 0.25 4.51 6.65 -83.81 -0.56 3.95 16 10 C -0.28 -4.90 9.22 -39.33 -0.36 -5.26 16 11 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 12 C -0.23 -5.10 9.99 -39.36 -0.39 -5.49 16 13 C 0.19 4.66 6.64 -39.14 -0.26 4.39 16 14 O -0.18 -5.15 9.76 0.06 0.00 -5.15 16 15 C -0.39 -10.95 9.49 30.89 0.29 -10.65 16 16 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 17 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 18 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 19 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.30 -6.56 9.01 -39.19 -0.35 -6.91 16 24 C 0.03 0.35 7.35 37.93 0.28 0.63 16 25 O -0.37 -4.48 11.00 -35.23 -0.39 -4.87 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.56 7.91 -51.93 -0.41 0.15 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.74 7.65 -51.93 -0.40 0.34 16 32 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 33 H 0.40 5.26 8.32 -40.82 -0.34 4.92 16 34 H 0.10 1.56 6.27 -52.49 -0.33 1.23 16 35 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.12 2.73 5.64 -52.49 -0.30 2.43 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -31.00 329.42 -7.77 -38.77 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.73 Total: 7.56 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.08 Total: -21.13 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.49 Total: -35.76 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.39 Total: -10.02 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.00 -7.77 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688511190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.751 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds