Wall clock time and date at job start Mon Mar 30 2020 08:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 H 1.09001 * 110.33385 * 55.79562 * 3 2 1 5 5 C 1.54477 * 110.37455 * 178.16380 * 3 2 1 6 6 C 1.54508 * 104.06369 * 142.80977 * 5 3 2 7 7 H 1.09005 * 110.62851 * 241.29952 * 6 5 3 8 8 N 1.46502 * 110.51025 * 118.64768 * 6 5 3 9 9 C 1.39671 * 119.99986 * 158.90797 * 8 6 5 10 10 C 1.39008 * 120.03938 * 359.71720 * 9 8 6 11 11 C 1.38149 * 120.05894 * 179.76957 * 10 9 8 12 12 C 1.38176 * 120.14518 * 0.51285 * 11 10 9 13 13 C 1.38908 * 120.07832 * 359.74396 * 12 11 10 14 14 O 1.35751 * 120.03587 * 180.02562 * 13 12 11 15 15 C 1.34824 * 117.00330 * 174.43775 * 14 13 12 16 16 H 1.07997 * 120.00306 * 5.05379 * 15 14 13 17 17 C 1.38659 * 119.99947 * 185.05453 * 15 14 13 18 18 N 1.31557 * 119.99733 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47210 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47183 * 119.99930 * 19 17 15 22 22 H 1.48500 * 109.47172 * 240.00324 * 19 17 15 23 23 C 1.38757 * 120.04155 * 179.97438 * 9 8 6 24 24 C 1.54474 * 104.06469 * 0.02562 * 6 5 3 25 25 O 1.44428 * 110.37235 * 293.54698 * 3 2 1 26 26 H 1.09002 * 109.46526 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47082 * 300.00119 * 1 2 3 28 28 H 1.09001 * 109.46758 * 60.00272 * 1 2 3 29 29 H 1.09004 * 109.47537 * 240.00155 * 2 1 3 30 30 H 1.08998 * 109.47460 * 119.99910 * 2 1 3 31 31 H 1.09005 * 110.51651 * 261.45458 * 5 3 2 32 32 H 1.09001 * 110.51380 * 24.16886 * 5 3 2 33 33 H 0.96999 * 120.00117 * 338.89934 * 8 6 5 34 34 H 1.07999 * 119.96797 * 0.02562 * 10 9 8 35 35 H 1.08007 * 119.92852 * 180.27717 * 11 10 9 36 36 H 1.07997 * 119.95694 * 179.76644 * 12 11 10 37 37 H 0.96999 * 119.99621 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.06687 * 359.97438 * 23 9 8 39 39 H 1.09003 * 110.37819 * 217.18985 * 24 6 5 40 40 H 1.09004 * 110.47017 * 94.89613 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6246 1.9911 0.8453 5 6 3.5839 1.4671 0.0464 6 6 3.9679 2.6571 -0.8611 7 1 4.5676 2.3180 -1.7059 8 7 4.6920 3.6744 -0.0948 9 6 5.5047 4.5988 -0.7548 10 6 5.6318 4.5508 -2.1382 11 6 6.4318 5.4680 -2.7919 12 6 7.1162 6.4289 -2.0725 13 6 6.9977 6.4789 -0.6894 14 8 7.6701 7.4236 0.0165 15 6 7.4224 7.4906 1.3401 16 1 6.7788 6.7596 1.8067 17 6 7.9940 8.4981 2.1023 18 7 8.7783 9.3884 1.5339 19 14 7.6514 8.5906 3.9362 20 1 6.7464 7.4800 4.3273 21 1 8.9286 8.4747 4.6848 22 1 7.0071 9.8901 4.2545 23 6 6.1904 5.5630 -0.0299 24 6 2.6106 3.2112 -1.3480 25 8 1.6977 2.0968 -1.2412 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9329 1.6356 1.0652 32 1 3.9928 0.5375 -0.3495 33 1 4.6068 3.7059 0.8709 34 1 5.1013 3.7984 -2.7029 35 1 6.5255 5.4315 -3.8672 36 1 7.7438 7.1420 -2.5862 37 1 9.1778 10.0934 2.0670 38 1 6.0964 5.6001 1.0454 39 1 2.6853 3.5421 -2.3839 40 1 2.2835 4.0328 -0.7107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688511190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:32 Heat of formation + Delta-G solvation = -71.490713 kcal Electronic energy + Delta-G solvation = -20996.276082 eV Core-core repulsion = 17775.557670 eV Total energy + Delta-G solvation = -3220.718412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09193 -40.42575 -38.51562 -36.00811 -34.46299 -34.21127 -32.27856 -30.57051 -29.42263 -28.39684 -27.23934 -24.66225 -23.55826 -22.97464 -21.97973 -21.55988 -19.72179 -19.14313 -17.54108 -17.20209 -16.90861 -16.64668 -16.37919 -16.01844 -15.56142 -15.50865 -15.26884 -14.66132 -14.49075 -14.26900 -14.10683 -13.92144 -13.57586 -13.48340 -13.04396 -12.80702 -12.60818 -12.50871 -12.35582 -12.20750 -12.08192 -11.82471 -11.77274 -11.57840 -11.27986 -11.00085 -10.77723 -10.58351 -9.11706 -8.45515 -8.27676 -6.13731 0.75588 0.89926 1.34413 1.43895 1.52734 2.18186 2.38146 2.88804 3.03875 3.25148 3.51257 3.59950 3.67607 3.95132 4.09587 4.16663 4.23707 4.27291 4.41053 4.45118 4.56298 4.60760 4.67934 4.75448 4.83110 4.85175 4.94129 5.04395 5.09949 5.10813 5.13348 5.16426 5.24447 5.43111 5.44445 5.74729 5.80174 5.83116 6.03394 6.11069 6.56639 6.81550 6.99949 7.83411 8.78440 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021455 B = 0.003755 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.758623 B = 7454.217053 C = 8510.371122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.068 0.932 5 C -0.151 4.151 6 C 0.124 3.876 7 H 0.098 0.902 8 N -0.733 5.733 9 C 0.255 3.745 10 C -0.264 4.264 11 C -0.026 4.026 12 C -0.260 4.260 13 C 0.152 3.848 14 O -0.233 6.233 15 C -0.409 4.409 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.019 2.981 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.313 4.313 24 C 0.031 3.969 25 O -0.383 6.383 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.401 0.599 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.272 0.728 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.116 -18.944 -2.108 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C 0.012 3.988 4 H 0.085 0.915 5 C -0.189 4.189 6 C 0.018 3.982 7 H 0.116 0.884 8 N -0.365 5.365 9 C 0.152 3.848 10 C -0.286 4.286 11 C -0.045 4.045 12 C -0.281 4.281 13 C 0.101 3.899 14 O -0.139 6.139 15 C -0.485 4.485 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.337 4.337 24 C -0.048 4.048 25 O -0.302 6.302 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.237 0.763 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.101 -18.817 -2.408 23.637 hybrid contribution 0.360 0.849 1.257 1.559 sum -13.741 -17.968 -1.151 22.649 Atomic orbital electron populations 1.21719 0.95367 1.02106 1.01633 1.21621 0.96688 0.93321 1.03626 1.23190 0.93462 0.95052 0.87101 0.91450 1.23239 0.95958 0.98549 1.01148 1.22282 0.92543 0.87759 0.95579 0.88401 1.44697 1.50253 1.32974 1.08540 1.17528 0.88057 0.87305 0.91897 1.20573 1.10124 1.06020 0.91889 1.20832 0.92348 0.91314 0.99960 1.20279 1.10758 1.06453 0.90630 1.19640 0.89781 0.88154 0.92328 1.83950 1.58409 1.49441 1.22089 1.21829 1.31510 1.14366 0.80842 0.88261 1.26593 0.95678 0.94109 1.05821 1.70199 1.31478 1.15793 1.38651 0.84527 0.78761 0.79156 0.73722 1.17484 1.19335 1.19410 1.20508 1.10257 1.03087 0.99875 1.23972 0.88531 0.89505 1.02742 1.89143 1.57040 1.43094 1.40924 0.91528 0.92751 0.93531 0.90976 0.88913 0.89037 0.88145 0.76339 0.84085 0.83040 0.87588 0.91909 0.86791 0.88331 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.83 71.98 0.71 -1.30 16 2 C -0.12 -1.47 5.57 30.59 0.17 -1.30 16 3 C 0.07 1.14 3.27 31.10 0.10 1.24 16 4 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.15 -2.32 6.39 31.61 0.20 -2.12 16 6 C 0.12 2.51 3.07 46.00 0.14 2.65 16 7 H 0.10 1.93 6.60 -2.38 -0.02 1.92 16 8 N -0.73 -19.10 5.29 -314.22 -1.66 -20.76 16 9 C 0.26 8.85 6.65 38.20 0.25 9.11 16 10 C -0.26 -8.31 9.22 22.43 0.21 -8.10 16 11 C -0.03 -0.88 10.03 22.23 0.22 -0.66 16 12 C -0.26 -11.48 9.99 22.42 0.22 -11.25 16 13 C 0.15 7.79 6.64 22.56 0.15 7.94 16 14 O -0.23 -14.33 9.76 -22.70 -0.22 -14.55 16 15 C -0.41 -24.21 9.49 67.92 0.64 -23.56 16 16 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 17 C -0.03 -1.44 5.49 84.83 0.47 -0.97 16 18 N -0.92 -57.47 13.67 21.61 0.30 -57.17 16 19 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 20 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 C -0.31 -13.86 9.01 22.52 0.20 -13.66 16 24 C 0.03 0.66 7.35 72.48 0.53 1.19 16 25 O -0.38 -8.27 11.00 -148.98 -1.64 -9.91 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.76 7.91 -2.39 -0.02 0.74 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.29 7.65 -2.38 -0.02 1.27 16 32 H 0.10 1.29 7.87 -2.39 -0.02 1.27 16 33 H 0.40 9.76 8.32 -92.71 -0.77 8.99 16 34 H 0.14 3.46 6.27 -2.91 -0.02 3.44 16 35 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.27 8.06 -2.39 -0.02 1.25 16 Total: -1.00 -71.91 329.42 3.30 -68.61 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.27 Total: 29.27 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 4.23 Total: -40.79 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -1.37 Total: -77.94 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -1.86 Total: -24.46 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -71.91 3.30 -68.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688511190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.879 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds