Wall clock time and date at job start Mon Mar 30 2020 07:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29414 * 120.00114 * 2 1 4 4 O 1.41595 * 119.99761 * 0.02562 * 3 2 1 5 5 C 1.47480 * 120.00083 * 180.02562 * 2 1 3 6 6 C 1.39645 * 120.18382 * 0.25363 * 5 2 1 7 7 C 1.37878 * 119.90027 * 180.32082 * 6 5 2 8 8 C 1.50697 * 119.85778 * 179.72159 * 7 6 5 9 9 C 1.38474 * 120.28201 * 359.69910 * 7 6 5 10 10 C 1.38151 * 120.37483 * 359.97438 * 9 7 6 11 11 C 1.38591 * 120.09262 * 0.03047 * 10 9 7 12 12 O 1.35761 * 120.13925 * 179.97438 * 11 10 9 13 13 C 1.42901 * 117.00344 * 354.50838 * 12 11 10 14 14 H 1.08997 * 109.46876 * 324.95437 * 13 12 11 15 15 C 1.53004 * 109.46719 * 84.95352 * 13 12 11 16 16 C 1.52993 * 109.47154 * 204.95487 * 13 12 11 17 17 C 1.50696 * 109.47391 * 65.00175 * 16 13 12 18 18 H 1.08005 * 120.00196 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00219 * 179.72512 * 17 16 13 20 20 N 1.31517 * 119.99909 * 0.27108 * 19 17 16 21 21 Si 1.86801 * 120.00213 * 180.27618 * 19 17 16 22 22 H 1.48501 * 109.47438 * 89.99807 * 21 19 17 23 23 H 1.48501 * 109.47160 * 209.99876 * 21 19 17 24 24 H 1.48495 * 109.46998 * 329.99709 * 21 19 17 25 25 H 1.09004 * 109.47182 * 270.00402 * 1 2 3 26 26 H 1.08997 * 109.47264 * 29.99656 * 1 2 3 27 27 H 1.08996 * 109.47256 * 150.00006 * 1 2 3 28 28 H 0.96702 * 113.99960 * 180.02562 * 4 3 2 29 29 H 1.07997 * 120.05088 * 0.04227 * 6 5 2 30 30 H 1.08992 * 109.47462 * 269.97849 * 8 7 6 31 31 H 1.09011 * 109.47105 * 29.97914 * 8 7 6 32 32 H 1.08997 * 109.47086 * 149.97272 * 8 7 6 33 33 H 1.08003 * 119.80779 * 179.97438 * 9 7 6 34 34 H 1.08001 * 119.95223 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46831 * 300.00268 * 15 13 12 36 36 H 1.09004 * 109.47105 * 60.00117 * 15 13 12 37 37 H 1.08999 * 109.46848 * 180.02562 * 15 13 12 38 38 H 1.09004 * 109.47639 * 304.99797 * 16 13 12 39 39 H 1.09002 * 109.47130 * 185.00327 * 16 13 12 40 40 H 0.97002 * 119.99944 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1541 1.1207 0.0000 4 8 1.4461 2.3470 0.0005 5 6 2.2444 -1.2772 -0.0006 6 6 1.5501 -2.4888 -0.0065 7 6 2.2453 -3.6794 -0.0003 8 6 1.4951 -4.9864 -0.0003 9 6 3.6301 -3.6794 0.0055 10 6 4.3286 -2.4875 0.0046 11 6 3.6455 -1.2817 -0.0015 12 8 4.3310 -0.1099 -0.0019 13 6 5.7520 -0.1894 0.1260 14 1 6.0117 -1.0185 0.7842 15 6 6.3760 -0.4177 -1.2523 16 6 6.2849 1.1173 0.7170 17 6 5.7667 1.2810 2.1226 18 1 5.1215 0.5285 2.5514 19 6 6.1205 2.3889 2.8631 20 7 6.9058 3.3055 2.3409 21 14 5.4844 2.5880 4.6082 22 1 6.4369 1.9576 5.5572 23 1 5.3530 4.0328 4.9253 24 1 4.1577 1.9320 4.7293 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 2.0144 3.1293 0.0001 29 1 0.4701 -2.4932 -0.0113 30 1 1.3099 -5.2990 1.0273 31 1 0.5444 -4.8596 -0.5184 32 1 2.0881 -5.7457 -0.5099 33 1 4.1669 -4.6165 0.0107 34 1 5.4086 -2.4955 0.0095 35 1 5.9963 -1.3487 -1.6733 36 1 6.1163 0.4114 -1.9106 37 1 7.4599 -0.4788 -1.1547 38 1 5.9498 1.9557 0.1063 39 1 7.3745 1.0916 0.7321 40 1 7.1550 4.0848 2.8620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695895588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:36 Heat of formation + Delta-G solvation = -16.237655 kcal Electronic energy + Delta-G solvation = -21853.952478 eV Core-core repulsion = 18635.630019 eV Total energy + Delta-G solvation = -3218.322459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.98997 -37.61120 -36.70724 -34.09814 -33.38419 -31.80065 -31.15826 -29.99991 -28.01535 -27.44804 -26.04713 -23.38198 -23.28375 -21.76493 -19.80449 -19.16243 -17.55020 -16.53283 -16.30992 -15.69734 -15.07334 -14.75495 -14.55271 -14.41393 -14.13815 -13.85956 -13.51967 -13.47459 -13.17461 -12.63948 -12.26337 -12.21189 -11.96473 -11.95753 -11.79165 -11.63400 -11.42171 -11.26396 -11.00500 -10.71901 -10.68722 -10.35141 -9.97150 -9.74208 -9.36179 -9.25841 -9.06756 -8.40079 -8.34770 -7.48894 -5.97941 -3.97737 1.12802 1.68960 2.76345 3.33814 3.40143 3.46252 3.51411 3.91465 4.06633 4.49392 4.70013 4.98875 5.01475 5.25184 5.33095 5.39232 5.41799 5.53986 5.61259 5.65226 5.66570 5.72226 5.78713 5.84899 5.91017 6.02120 6.09101 6.21875 6.29273 6.40969 6.56377 6.64934 6.73771 6.81016 6.99745 7.24262 7.52317 7.64273 7.98887 8.16993 8.24855 8.41498 9.04967 9.64761 11.13597 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.006065 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.200710 B = 4615.515223 C = 5249.104694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.144 3.856 3 N -0.274 5.274 4 O -0.422 6.422 5 C -0.092 4.092 6 C -0.056 4.056 7 C -0.148 4.148 8 C -0.102 4.102 9 C -0.064 4.064 10 C -0.218 4.218 11 C 0.179 3.821 12 O -0.256 6.256 13 C 0.080 3.920 14 H 0.061 0.939 15 C -0.177 4.177 16 C 0.030 3.970 17 C -0.504 4.504 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.898 5.898 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.406 0.594 29 H 0.130 0.870 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.720 -12.953 -6.713 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 N -0.015 5.015 4 O -0.332 6.332 5 C -0.094 4.094 6 C -0.076 4.076 7 C -0.149 4.149 8 C -0.159 4.159 9 C -0.083 4.083 10 C -0.237 4.237 11 C 0.128 3.872 12 O -0.165 6.165 13 C 0.024 3.976 14 H 0.079 0.921 15 C -0.234 4.234 16 C -0.007 4.007 17 C -0.542 4.542 18 H 0.072 0.928 19 C -0.142 4.142 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.255 0.745 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.152 0.848 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.335 -12.440 -6.691 16.931 hybrid contribution -0.452 0.428 1.078 1.245 sum -9.787 -12.012 -5.613 16.480 Atomic orbital electron populations 1.21179 0.92211 1.03312 1.03137 1.22954 0.93663 0.91101 0.96788 1.77283 1.21622 0.91030 1.11614 1.88224 1.35792 1.13987 1.95159 1.17531 0.89631 0.90677 1.11608 1.20819 0.99308 0.89947 0.97506 1.19530 0.93709 0.94872 1.06770 1.20637 0.99489 0.93957 1.01827 1.20888 0.93402 0.97356 0.96659 1.21344 1.00861 0.91927 1.09587 1.19368 0.91000 0.86550 0.90321 1.86507 1.21064 1.25122 1.83803 1.22948 0.76969 1.02837 0.94803 0.92114 1.22412 1.01194 1.01385 0.98416 1.19216 0.95850 0.89717 0.95935 1.21064 1.29046 1.06116 0.98007 0.92848 1.24928 0.95260 0.95886 0.98148 1.69950 1.36121 1.10690 1.37037 0.86634 0.79363 0.77190 0.85108 1.20763 1.21237 1.19965 0.90550 0.90615 0.90945 0.74492 0.85269 0.91783 0.91997 0.91999 0.86119 0.84795 0.93356 0.91929 0.91457 0.95225 0.94610 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.28 36.00 0.33 -1.55 16 2 C 0.14 2.57 7.11 -79.85 -0.57 2.00 16 3 N -0.27 -5.63 9.97 35.07 0.35 -5.28 16 4 O -0.42 -7.68 13.73 -11.47 -0.16 -7.84 16 5 C -0.09 -1.58 5.88 -104.90 -0.62 -2.19 16 6 C -0.06 -0.75 9.00 -39.19 -0.35 -1.10 16 7 C -0.15 -1.83 5.87 -104.67 -0.61 -2.44 16 8 C -0.10 -0.90 10.00 36.00 0.36 -0.54 16 9 C -0.06 -0.84 9.68 -39.53 -0.38 -1.22 16 10 C -0.22 -3.47 8.24 -39.48 -0.33 -3.79 16 11 C 0.18 3.34 6.61 -38.75 -0.26 3.09 16 12 O -0.26 -5.54 7.43 -18.99 -0.14 -5.68 16 13 C 0.08 1.68 2.17 -26.73 -0.06 1.62 16 14 H 0.06 1.23 6.31 -51.93 -0.33 0.91 16 15 C -0.18 -3.03 9.17 37.16 0.34 -2.69 16 16 C 0.03 0.76 4.68 -27.89 -0.13 0.63 16 17 C -0.50 -14.38 8.88 -34.44 -0.31 -14.69 16 18 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.04 7.35 -51.93 -0.38 0.66 16 27 H 0.07 0.76 6.46 -51.93 -0.34 0.43 16 28 H 0.41 6.19 9.28 45.56 0.42 6.62 16 29 H 0.13 1.36 6.35 -52.49 -0.33 1.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.08 -51.92 -0.42 0.05 16 32 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.13 2.02 5.42 -52.49 -0.28 1.74 16 35 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -33.12 334.56 -6.80 -39.93 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.94 Total: 4.01 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.67 Total: -21.31 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 1.09 Total: -31.46 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.30 Total: -13.52 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.12 -6.80 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695895588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.690 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds