Wall clock time and date at job start Mon Mar 30 2020 07:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29414 * 120.00114 * 2 1 4 4 O 1.41595 * 119.99761 * 0.02562 * 3 2 1 5 5 C 1.47480 * 120.00083 * 180.02562 * 2 1 3 6 6 C 1.39645 * 120.18382 * 0.25363 * 5 2 1 7 7 C 1.37878 * 119.90027 * 180.32082 * 6 5 2 8 8 C 1.50697 * 119.85778 * 179.72159 * 7 6 5 9 9 C 1.38474 * 120.28201 * 359.69910 * 7 6 5 10 10 C 1.38151 * 120.37483 * 359.97438 * 9 7 6 11 11 C 1.38591 * 120.09262 * 0.03047 * 10 9 7 12 12 O 1.35761 * 120.13925 * 179.97438 * 11 10 9 13 13 C 1.42901 * 117.00344 * 354.50838 * 12 11 10 14 14 H 1.08997 * 109.46876 * 324.95437 * 13 12 11 15 15 C 1.53004 * 109.46719 * 84.95352 * 13 12 11 16 16 C 1.52993 * 109.47154 * 204.95487 * 13 12 11 17 17 C 1.50696 * 109.47391 * 65.00175 * 16 13 12 18 18 H 1.08005 * 120.00196 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00219 * 179.72512 * 17 16 13 20 20 N 1.31517 * 119.99909 * 0.27108 * 19 17 16 21 21 Si 1.86801 * 120.00213 * 180.27618 * 19 17 16 22 22 H 1.48501 * 109.47438 * 89.99807 * 21 19 17 23 23 H 1.48501 * 109.47160 * 209.99876 * 21 19 17 24 24 H 1.48495 * 109.46998 * 329.99709 * 21 19 17 25 25 H 1.09004 * 109.47182 * 270.00402 * 1 2 3 26 26 H 1.08997 * 109.47264 * 29.99656 * 1 2 3 27 27 H 1.08996 * 109.47256 * 150.00006 * 1 2 3 28 28 H 0.96702 * 113.99960 * 180.02562 * 4 3 2 29 29 H 1.07997 * 120.05088 * 0.04227 * 6 5 2 30 30 H 1.08992 * 109.47462 * 269.97849 * 8 7 6 31 31 H 1.09011 * 109.47105 * 29.97914 * 8 7 6 32 32 H 1.08997 * 109.47086 * 149.97272 * 8 7 6 33 33 H 1.08003 * 119.80779 * 179.97438 * 9 7 6 34 34 H 1.08001 * 119.95223 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46831 * 300.00268 * 15 13 12 36 36 H 1.09004 * 109.47105 * 60.00117 * 15 13 12 37 37 H 1.08999 * 109.46848 * 180.02562 * 15 13 12 38 38 H 1.09004 * 109.47639 * 304.99797 * 16 13 12 39 39 H 1.09002 * 109.47130 * 185.00327 * 16 13 12 40 40 H 0.97002 * 119.99944 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1541 1.1207 0.0000 4 8 1.4461 2.3470 0.0005 5 6 2.2444 -1.2772 -0.0006 6 6 1.5501 -2.4888 -0.0065 7 6 2.2453 -3.6794 -0.0003 8 6 1.4951 -4.9864 -0.0003 9 6 3.6301 -3.6794 0.0055 10 6 4.3286 -2.4875 0.0046 11 6 3.6455 -1.2817 -0.0015 12 8 4.3310 -0.1099 -0.0019 13 6 5.7520 -0.1894 0.1260 14 1 6.0117 -1.0185 0.7842 15 6 6.3760 -0.4177 -1.2523 16 6 6.2849 1.1173 0.7170 17 6 5.7667 1.2810 2.1226 18 1 5.1215 0.5285 2.5514 19 6 6.1205 2.3889 2.8631 20 7 6.9058 3.3055 2.3409 21 14 5.4844 2.5880 4.6082 22 1 6.4369 1.9576 5.5572 23 1 5.3530 4.0328 4.9253 24 1 4.1577 1.9320 4.7293 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 2.0144 3.1293 0.0001 29 1 0.4701 -2.4932 -0.0113 30 1 1.3099 -5.2990 1.0273 31 1 0.5444 -4.8596 -0.5184 32 1 2.0881 -5.7457 -0.5099 33 1 4.1669 -4.6165 0.0107 34 1 5.4086 -2.4955 0.0095 35 1 5.9963 -1.3487 -1.6733 36 1 6.1163 0.4114 -1.9106 37 1 7.4599 -0.4788 -1.1547 38 1 5.9498 1.9557 0.1063 39 1 7.3745 1.0916 0.7321 40 1 7.1550 4.0848 2.8620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695895588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:35 Heat of formation + Delta-G solvation = -37.550529 kcal Electronic energy + Delta-G solvation = -21854.876674 eV Core-core repulsion = 18635.630019 eV Total energy + Delta-G solvation = -3219.246655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26802 -38.96729 -38.00654 -35.58196 -35.16662 -33.46566 -32.37521 -31.20474 -29.42546 -29.12831 -27.05036 -25.23602 -24.55827 -23.16192 -21.27062 -20.43599 -18.93675 -18.52093 -17.85418 -17.07291 -16.55164 -16.25368 -16.07885 -15.65419 -15.43213 -15.18430 -14.73322 -14.54964 -14.40579 -14.09350 -13.78733 -13.51528 -13.48082 -13.40120 -13.12644 -12.95045 -12.69250 -12.68496 -12.55719 -12.38491 -12.26895 -11.86317 -11.64225 -11.28716 -11.02660 -10.98161 -10.62831 -10.56082 -9.59182 -8.74652 -8.21330 -6.28245 -0.05179 0.54684 1.32769 1.34593 1.45473 1.51957 2.24170 2.37711 2.51867 2.90383 3.13391 3.52422 3.94779 4.01058 4.08186 4.20294 4.23587 4.35356 4.43343 4.44361 4.56042 4.63621 4.66266 4.80685 4.86380 5.01404 5.02112 5.10092 5.16229 5.18629 5.22015 5.35226 5.39899 5.51158 5.51951 5.70501 5.76283 5.95721 5.99927 6.20026 6.74876 6.82347 6.94743 7.37848 8.90515 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.006065 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.200710 B = 4615.515223 C = 5249.104694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.144 3.856 3 N -0.334 5.334 4 O -0.427 6.427 5 C -0.118 4.118 6 C -0.048 4.048 7 C -0.138 4.138 8 C -0.101 4.101 9 C -0.059 4.059 10 C -0.229 4.229 11 C 0.137 3.863 12 O -0.286 6.286 13 C 0.088 3.912 14 H 0.064 0.936 15 C -0.165 4.165 16 C 0.036 3.964 17 C -0.517 4.517 18 H 0.042 0.958 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.954 3.046 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.411 0.589 29 H 0.163 0.837 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.080 0.920 38 H -0.005 1.005 39 H 0.022 0.978 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 -16.242 -6.389 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.044 4.044 3 N -0.078 5.078 4 O -0.337 6.337 5 C -0.120 4.120 6 C -0.068 4.068 7 C -0.138 4.138 8 C -0.158 4.158 9 C -0.078 4.078 10 C -0.247 4.247 11 C 0.088 3.912 12 O -0.197 6.197 13 C 0.032 3.968 14 H 0.081 0.919 15 C -0.222 4.222 16 C -0.001 4.001 17 C -0.555 4.555 18 H 0.061 0.939 19 C -0.190 4.190 20 N -0.570 5.570 21 Si 0.779 3.221 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.204 1.204 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.261 0.739 29 H 0.180 0.820 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.172 0.828 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.014 0.986 39 H 0.041 0.959 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.097 -15.743 -6.372 20.288 hybrid contribution 0.013 1.294 0.951 1.606 sum -11.085 -14.449 -5.421 19.001 Atomic orbital electron populations 1.21235 0.89211 1.04734 1.04099 1.23585 0.95977 0.90706 0.94125 1.77282 1.23336 0.92181 1.14961 1.88163 1.35964 1.14057 1.95481 1.17934 0.89336 0.91737 1.13033 1.21229 1.00925 0.88801 0.95851 1.20055 0.93668 0.96221 1.03874 1.20733 1.00056 0.91935 1.03059 1.21320 0.94158 0.97492 0.94788 1.21469 1.01121 0.92057 1.10099 1.19793 0.91905 0.86470 0.93057 1.86434 1.20709 1.27398 1.85158 1.22619 0.77859 0.99762 0.96579 0.91852 1.22290 1.01791 1.02057 0.96045 1.19024 0.95020 0.91438 0.94652 1.21306 1.28768 1.06035 0.99377 0.93945 1.25736 0.95454 0.95567 1.02250 1.70059 1.37152 1.11195 1.38635 0.85624 0.78616 0.77427 0.80427 1.19206 1.20426 1.20389 0.89587 0.91297 0.87385 0.73891 0.81961 0.90639 0.90232 0.90416 0.82846 0.84737 0.90976 0.93038 0.90077 0.98630 0.95950 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.28 71.23 0.66 -2.75 16 2 C 0.14 5.15 7.11 45.35 0.32 5.48 16 3 N -0.33 -14.38 9.97 -42.97 -0.43 -14.81 16 4 O -0.43 -16.40 13.73 -38.77 -0.53 -16.93 16 5 C -0.12 -3.95 5.88 -20.05 -0.12 -4.07 16 6 C -0.05 -1.14 9.00 22.52 0.20 -0.94 16 7 C -0.14 -2.82 5.87 -19.89 -0.12 -2.94 16 8 C -0.10 -1.23 10.00 71.23 0.71 -0.51 16 9 C -0.06 -1.35 9.68 22.31 0.22 -1.13 16 10 C -0.23 -7.00 8.24 22.33 0.18 -6.82 16 11 C 0.14 5.18 6.61 22.81 0.15 5.33 16 12 O -0.29 -12.97 7.43 -90.87 -0.68 -13.64 16 13 C 0.09 3.82 2.17 30.59 0.07 3.89 16 14 H 0.06 2.66 6.31 -2.39 -0.02 2.64 16 15 C -0.16 -5.75 9.17 71.98 0.66 -5.09 16 16 C 0.04 1.93 4.68 29.84 0.14 2.07 16 17 C -0.52 -30.71 8.88 25.60 0.23 -30.48 16 18 H 0.04 2.56 7.74 -2.91 -0.02 2.53 16 19 C 0.01 0.45 5.46 84.65 0.46 0.91 16 20 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 21 Si 0.95 46.71 29.54 68.60 2.03 48.74 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 24 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 25 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.07 1.85 7.35 -2.39 -0.02 1.83 16 27 H 0.11 1.90 6.46 -2.39 -0.02 1.88 16 28 H 0.41 13.72 9.28 -74.06 -0.69 13.03 16 29 H 0.16 2.62 6.35 -2.91 -0.02 2.60 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.74 8.08 -2.38 -0.02 0.72 16 32 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.13 3.97 5.42 -2.91 -0.02 3.95 16 35 H 0.07 2.15 6.91 -2.39 -0.02 2.13 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 39 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -75.67 334.56 4.81 -70.86 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.36 Total: 19.95 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.77 Total: -37.05 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -0.14 Total: -71.93 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.21 Total: -30.57 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -75.67 4.81 -70.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695895588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.314 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds