Wall clock time and date at job start Mon Mar 30 2020 08:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47450 * 2 1 4 4 H 1.09005 * 110.56577 * 56.22195 * 3 2 1 5 5 C 1.54477 * 110.51191 * 293.54319 * 3 2 1 6 6 O 1.44421 * 104.90219 * 217.43045 * 5 3 2 7 7 C 1.44431 * 105.27693 * 40.45617 * 6 5 3 8 8 C 1.54482 * 104.79991 * 319.48946 * 7 6 5 9 9 H 1.08994 * 110.51160 * 142.62253 * 8 7 6 10 10 N 1.46501 * 110.50825 * 265.19583 * 8 7 6 11 11 C 1.39676 * 119.99699 * 273.54350 * 10 8 7 12 12 C 1.39003 * 120.04155 * 359.73171 * 11 10 8 13 13 C 1.38147 * 120.06049 * 179.73925 * 12 11 10 14 14 C 1.38169 * 120.14406 * 0.51010 * 13 12 11 15 15 C 1.38921 * 120.08025 * 359.76854 * 14 13 12 16 16 O 1.35745 * 120.03283 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99853 * 174.48008 * 16 15 14 18 18 H 1.07995 * 119.99791 * 5.05880 * 17 16 15 19 19 C 1.38652 * 119.99873 * 185.05702 * 17 16 15 20 20 N 1.31563 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00133 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46919 * 90.00083 * 21 19 17 23 23 H 1.48495 * 109.47305 * 209.99865 * 21 19 17 24 24 H 1.48502 * 109.47163 * 330.00289 * 21 19 17 25 25 C 1.38748 * 120.03838 * 180.02562 * 11 10 8 26 26 H 1.09007 * 109.46607 * 59.99672 * 1 2 3 27 27 H 1.08992 * 109.47323 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47342 * 300.00493 * 1 2 3 29 29 H 1.08996 * 109.47342 * 239.99507 * 2 1 3 30 30 H 1.09004 * 109.47105 * 119.99758 * 2 1 3 31 31 H 1.09002 * 110.37090 * 98.54227 * 5 3 2 32 32 H 1.09003 * 110.36953 * 336.31729 * 5 3 2 33 33 H 1.09001 * 110.37122 * 78.31421 * 7 6 5 34 34 H 1.08994 * 110.37774 * 200.54789 * 7 6 5 35 35 H 0.96994 * 120.00279 * 93.55264 * 10 8 7 36 36 H 1.08004 * 119.96755 * 359.97012 * 12 11 10 37 37 H 1.08000 * 119.92820 * 180.22966 * 13 12 11 38 38 H 1.08001 * 119.96109 * 179.73899 * 14 13 12 39 39 H 0.97002 * 119.99832 * 179.97438 * 20 19 17 40 40 H 1.07999 * 120.07020 * 0.02601 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6327 1.9926 0.8483 5 6 1.6756 2.1454 -1.3264 6 8 2.8135 2.9821 -1.6281 7 6 3.9708 2.1878 -1.2879 8 6 3.5864 1.4733 0.0267 9 1 3.9868 0.4597 0.0417 10 7 4.0692 2.2318 1.1833 11 6 5.3671 2.0300 1.6584 12 6 6.1994 1.1056 1.0378 13 6 7.4850 0.9096 1.5040 14 6 7.9441 1.6234 2.5943 15 6 7.1154 2.5445 3.2226 16 8 7.5673 3.2449 4.2940 17 6 6.7557 4.2028 4.7856 18 1 5.7624 4.3289 4.3809 19 6 7.1963 5.0258 5.8107 20 7 8.4065 4.8724 6.3034 21 14 6.0722 6.3534 6.4914 22 1 5.2745 5.7986 7.6144 23 1 6.8905 7.4920 6.9805 24 1 5.1580 6.8249 5.4204 25 6 5.8251 2.7475 2.7540 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.7801 2.7539 -1.1998 32 1 1.5252 1.4100 -2.1167 33 1 4.1735 1.4575 -2.0713 34 1 4.8389 2.8286 -1.1336 35 1 3.4876 2.8740 1.6193 36 1 5.8419 0.5429 0.1881 37 1 8.1311 0.1935 1.0179 38 1 8.9482 1.4647 2.9589 39 1 8.7149 5.4484 7.0203 40 1 5.1788 3.4626 3.2412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699437439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:47 Heat of formation + Delta-G solvation = -51.436976 kcal Electronic energy + Delta-G solvation = -21264.195771 eV Core-core repulsion = 18044.346954 eV Total energy + Delta-G solvation = -3219.848816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09858 -38.83796 -36.78429 -34.97265 -34.08562 -32.16746 -30.30696 -28.82299 -28.23891 -27.36551 -25.24090 -24.15599 -22.39215 -21.85411 -20.59088 -20.18259 -17.89866 -17.31267 -16.56488 -16.00747 -15.92007 -15.22341 -15.02438 -14.64288 -14.25247 -14.00277 -13.85617 -13.57508 -13.48158 -12.90873 -12.84885 -12.41397 -12.38724 -12.13637 -11.81085 -11.61521 -11.32896 -11.19437 -11.09844 -10.91508 -10.83609 -10.73064 -10.52770 -10.37804 -10.02151 -9.36772 -9.32569 -8.74584 -7.35048 -6.78134 -6.39758 -3.99007 2.38318 2.55915 3.15267 3.16510 3.20947 3.67245 3.84599 4.01013 4.27800 4.54613 4.65828 4.74079 4.90732 4.96194 5.11510 5.13941 5.16401 5.23971 5.36917 5.42186 5.50825 5.56067 5.66538 5.71433 5.74074 5.81781 5.91968 5.96946 6.01471 6.28280 6.37047 6.57522 6.65648 6.71654 7.03650 7.16799 7.39080 7.49772 7.67353 8.01191 8.06394 8.19289 9.06439 9.78700 10.78574 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.004179 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.431403 B = 6698.052492 C = 7447.875003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.130 4.130 4 H 0.089 0.911 5 C 0.049 3.951 6 O -0.373 6.373 7 C 0.027 3.973 8 C 0.131 3.869 9 H 0.093 0.907 10 N -0.742 5.742 11 C 0.248 3.752 12 C -0.282 4.282 13 C -0.040 4.040 14 C -0.236 4.236 15 C 0.190 3.810 16 O -0.178 6.178 17 C -0.389 4.389 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.300 4.300 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.396 0.604 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.269 0.731 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 -8.105 -13.194 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.149 4.149 4 H 0.108 0.892 5 C -0.028 4.028 6 O -0.292 6.292 7 C -0.051 4.051 8 C 0.024 3.976 9 H 0.111 0.889 10 N -0.373 5.373 11 C 0.147 3.853 12 C -0.304 4.304 13 C -0.059 4.059 14 C -0.256 4.256 15 C 0.135 3.865 16 O -0.081 6.081 17 C -0.466 4.466 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.764 3.236 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.324 4.324 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.230 0.770 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.101 -7.899 -13.100 20.141 hybrid contribution -0.835 0.730 0.590 1.257 sum -13.936 -7.169 -12.510 20.053 Atomic orbital electron populations 1.21793 0.95458 1.01849 1.01972 1.21531 0.96136 0.94780 1.02677 1.22894 0.94880 0.97601 0.99507 0.89237 1.23491 0.90528 0.93965 0.94825 1.89160 1.15012 1.38442 1.86574 1.24090 0.90116 0.95466 0.95465 1.22179 0.92685 0.96278 0.86500 0.88915 1.44567 1.12897 1.46514 1.33360 1.17467 0.83698 0.92561 0.91547 1.20069 0.96113 1.07509 1.06746 1.20370 0.94422 0.96601 0.94460 1.20047 1.00480 1.03969 1.01140 1.19069 0.90982 0.90225 0.86203 1.83985 1.43415 1.43484 1.37217 1.21301 0.97045 1.10199 1.18015 0.89187 1.25267 0.96772 0.98115 0.96368 1.70044 1.16494 1.38072 1.25358 0.85739 0.79075 0.79523 0.79238 1.19965 1.20278 1.19284 1.20502 0.98490 1.10179 1.03250 0.92648 0.92520 0.92528 0.91583 0.91175 0.89263 0.92172 0.92056 0.88240 0.76954 0.87943 0.87202 0.86908 0.92115 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.76 37.16 0.36 -0.67 16 2 C -0.11 -0.89 5.15 -26.74 -0.14 -1.03 16 3 C -0.13 -1.23 2.93 -88.96 -0.26 -1.49 16 4 H 0.09 0.89 7.67 -51.93 -0.40 0.49 16 5 C 0.05 0.47 6.31 37.93 0.24 0.70 16 6 O -0.37 -4.86 11.65 -35.23 -0.41 -5.27 16 7 C 0.03 0.33 7.35 37.94 0.28 0.61 16 8 C 0.13 1.55 2.72 -66.26 -0.18 1.37 16 9 H 0.09 1.07 6.19 -51.93 -0.32 0.75 16 10 N -0.74 -11.07 5.30 -50.58 -0.27 -11.33 16 11 C 0.25 4.61 6.65 -83.81 -0.56 4.05 16 12 C -0.28 -4.92 9.22 -39.33 -0.36 -5.29 16 13 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 14 C -0.24 -5.14 9.99 -39.35 -0.39 -5.53 16 15 C 0.19 4.71 6.64 -39.13 -0.26 4.45 16 16 O -0.18 -5.19 9.76 0.06 0.00 -5.19 16 17 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 18 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 21 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 25 C -0.30 -6.67 9.01 -39.20 -0.35 -7.02 16 26 H 0.05 0.34 7.49 -51.93 -0.39 -0.05 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.49 7.81 -51.93 -0.41 0.08 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.39 8.06 -51.93 -0.42 0.97 16 35 H 0.40 5.70 8.34 -40.82 -0.34 5.36 16 36 H 0.10 1.51 6.27 -52.48 -0.33 1.18 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.12 2.78 5.64 -52.49 -0.30 2.49 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -31.51 327.86 -7.51 -39.02 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.68 Total: 7.75 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.82 Total: -20.79 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.49 Total: -36.30 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.41 Total: -10.46 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.51 -7.51 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699437439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.419 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds