Wall clock time and date at job start Mon Mar 30 2020 08:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47450 * 2 1 4 4 H 1.09005 * 110.56577 * 56.22195 * 3 2 1 5 5 C 1.54477 * 110.51191 * 293.54319 * 3 2 1 6 6 O 1.44421 * 104.90219 * 217.43045 * 5 3 2 7 7 C 1.44431 * 105.27693 * 40.45617 * 6 5 3 8 8 C 1.54482 * 104.79991 * 319.48946 * 7 6 5 9 9 H 1.08994 * 110.51160 * 142.62253 * 8 7 6 10 10 N 1.46501 * 110.50825 * 265.19583 * 8 7 6 11 11 C 1.39676 * 119.99699 * 273.54350 * 10 8 7 12 12 C 1.39003 * 120.04155 * 359.73171 * 11 10 8 13 13 C 1.38147 * 120.06049 * 179.73925 * 12 11 10 14 14 C 1.38169 * 120.14406 * 0.51010 * 13 12 11 15 15 C 1.38921 * 120.08025 * 359.76854 * 14 13 12 16 16 O 1.35745 * 120.03283 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99853 * 174.48008 * 16 15 14 18 18 H 1.07995 * 119.99791 * 5.05880 * 17 16 15 19 19 C 1.38652 * 119.99873 * 185.05702 * 17 16 15 20 20 N 1.31563 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00133 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46919 * 90.00083 * 21 19 17 23 23 H 1.48495 * 109.47305 * 209.99865 * 21 19 17 24 24 H 1.48502 * 109.47163 * 330.00289 * 21 19 17 25 25 C 1.38748 * 120.03838 * 180.02562 * 11 10 8 26 26 H 1.09007 * 109.46607 * 59.99672 * 1 2 3 27 27 H 1.08992 * 109.47323 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47342 * 300.00493 * 1 2 3 29 29 H 1.08996 * 109.47342 * 239.99507 * 2 1 3 30 30 H 1.09004 * 109.47105 * 119.99758 * 2 1 3 31 31 H 1.09002 * 110.37090 * 98.54227 * 5 3 2 32 32 H 1.09003 * 110.36953 * 336.31729 * 5 3 2 33 33 H 1.09001 * 110.37122 * 78.31421 * 7 6 5 34 34 H 1.08994 * 110.37774 * 200.54789 * 7 6 5 35 35 H 0.96994 * 120.00279 * 93.55264 * 10 8 7 36 36 H 1.08004 * 119.96755 * 359.97012 * 12 11 10 37 37 H 1.08000 * 119.92820 * 180.22966 * 13 12 11 38 38 H 1.08001 * 119.96109 * 179.73899 * 14 13 12 39 39 H 0.97002 * 119.99832 * 179.97438 * 20 19 17 40 40 H 1.07999 * 120.07020 * 0.02601 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6327 1.9926 0.8483 5 6 1.6756 2.1454 -1.3264 6 8 2.8135 2.9821 -1.6281 7 6 3.9708 2.1878 -1.2879 8 6 3.5864 1.4733 0.0267 9 1 3.9868 0.4597 0.0417 10 7 4.0692 2.2318 1.1833 11 6 5.3671 2.0300 1.6584 12 6 6.1994 1.1056 1.0378 13 6 7.4850 0.9096 1.5040 14 6 7.9441 1.6234 2.5943 15 6 7.1154 2.5445 3.2226 16 8 7.5673 3.2449 4.2940 17 6 6.7557 4.2028 4.7856 18 1 5.7624 4.3289 4.3809 19 6 7.1963 5.0258 5.8107 20 7 8.4065 4.8724 6.3034 21 14 6.0722 6.3534 6.4914 22 1 5.2745 5.7986 7.6144 23 1 6.8905 7.4920 6.9805 24 1 5.1580 6.8249 5.4204 25 6 5.8251 2.7475 2.7540 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.7801 2.7539 -1.1998 32 1 1.5252 1.4100 -2.1167 33 1 4.1735 1.4575 -2.0713 34 1 4.8389 2.8286 -1.1336 35 1 3.4876 2.8740 1.6193 36 1 5.8419 0.5429 0.1881 37 1 8.1311 0.1935 1.0179 38 1 8.9482 1.4647 2.9589 39 1 8.7149 5.4484 7.0203 40 1 5.1788 3.4626 3.2412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699437439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:46 Heat of formation + Delta-G solvation = -72.345440 kcal Electronic energy + Delta-G solvation = -21265.102430 eV Core-core repulsion = 18044.346954 eV Total energy + Delta-G solvation = -3220.755475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16763 -40.43951 -38.44578 -35.98986 -35.19483 -34.18460 -31.57061 -30.29983 -29.16721 -28.68204 -27.24430 -24.85799 -23.57250 -23.41747 -21.75911 -21.31927 -19.73227 -18.96287 -17.66084 -17.05989 -16.98205 -16.58766 -16.49497 -15.99088 -15.80725 -15.48995 -15.27568 -14.77350 -14.48837 -14.32253 -14.13388 -13.79267 -13.50953 -13.40023 -12.94276 -12.82616 -12.68690 -12.48679 -12.41908 -12.16414 -12.05051 -11.92994 -11.66198 -11.48963 -11.28875 -11.10229 -10.77770 -10.49342 -9.11307 -8.46056 -8.25308 -6.14405 0.75984 0.90655 1.33327 1.43563 1.50990 2.17792 2.45640 2.88185 3.01932 3.25290 3.44938 3.59441 3.81171 3.92510 4.05376 4.18808 4.28869 4.34385 4.43975 4.50018 4.52651 4.61154 4.62168 4.74328 4.81381 4.87954 4.88056 5.00979 5.08146 5.14006 5.15555 5.19126 5.29728 5.43062 5.46007 5.74262 5.79426 5.81981 6.04299 6.11649 6.59119 6.79583 6.99301 7.82570 8.77580 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.004179 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.431403 B = 6698.052492 C = 7447.875003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.122 4.122 4 H 0.082 0.918 5 C 0.048 3.952 6 O -0.400 6.400 7 C 0.028 3.972 8 C 0.125 3.875 9 H 0.106 0.894 10 N -0.735 5.735 11 C 0.256 3.744 12 C -0.263 4.263 13 C -0.025 4.025 14 C -0.261 4.261 15 C 0.153 3.847 16 O -0.232 6.232 17 C -0.411 4.411 18 H 0.098 0.902 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.256 1.256 25 C -0.317 4.317 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.397 0.603 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.272 0.728 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.975 -9.547 -15.791 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.141 4.141 4 H 0.101 0.899 5 C -0.029 4.029 6 O -0.319 6.319 7 C -0.050 4.050 8 C 0.019 3.981 9 H 0.124 0.876 10 N -0.364 5.364 11 C 0.152 3.848 12 C -0.285 4.285 13 C -0.043 4.043 14 C -0.282 4.282 15 C 0.101 3.899 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.115 0.885 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.187 1.187 23 H -0.194 1.194 24 H -0.180 1.180 25 C -0.341 4.341 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.685 -9.380 -15.763 24.135 hybrid contribution -0.167 0.965 1.094 1.469 sum -15.853 -8.415 -14.669 23.180 Atomic orbital electron populations 1.21788 0.94605 1.02442 1.02167 1.21515 0.96846 0.93346 1.02990 1.22855 0.92946 0.98848 0.99460 0.89922 1.23683 0.89764 0.94233 0.95187 1.89140 1.16124 1.39850 1.86794 1.24070 0.89341 0.95413 0.96160 1.22473 0.94444 0.96147 0.85040 0.87642 1.44741 1.11420 1.46373 1.33859 1.17546 0.85327 0.91678 0.90200 1.20568 0.95279 1.06009 1.06686 1.20842 0.95241 0.95727 0.92512 1.20283 1.00350 1.04756 1.02804 1.19647 0.92715 0.91112 0.86388 1.83944 1.44869 1.45213 1.39840 1.21774 0.97589 1.10760 1.18643 0.88498 1.26564 0.98564 1.00512 0.96370 1.70190 1.18969 1.40045 1.26784 0.84608 0.76948 0.76010 0.78750 1.18693 1.19445 1.17974 1.20508 0.97679 1.11049 1.04837 0.91738 0.91770 0.93112 0.90163 0.91955 0.88299 0.90076 0.89377 0.90528 0.76825 0.83808 0.82839 0.87551 0.91868 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.76 71.98 0.70 -0.86 16 2 C -0.11 -1.32 5.15 30.59 0.16 -1.16 16 3 C -0.12 -1.93 2.93 -9.72 -0.03 -1.96 16 4 H 0.08 1.45 7.67 -2.38 -0.02 1.43 16 5 C 0.05 0.74 6.31 72.48 0.46 1.20 16 6 O -0.40 -9.33 11.65 -148.98 -1.74 -11.07 16 7 C 0.03 0.59 7.35 72.49 0.53 1.13 16 8 C 0.12 2.53 2.72 46.07 0.13 2.65 16 9 H 0.11 1.92 6.19 -2.39 -0.01 1.91 16 10 N -0.73 -20.48 5.30 -313.93 -1.66 -22.14 16 11 C 0.26 9.14 6.65 38.20 0.25 9.39 16 12 C -0.26 -8.28 9.22 22.43 0.21 -8.08 16 13 C -0.02 -0.84 10.03 22.23 0.22 -0.62 16 14 C -0.26 -11.59 9.99 22.42 0.22 -11.37 16 15 C 0.15 7.94 6.64 22.56 0.15 8.09 16 16 O -0.23 -14.52 9.76 -22.69 -0.22 -14.74 16 17 C -0.41 -24.81 9.49 67.92 0.64 -24.17 16 18 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 20 N -0.92 -57.88 13.67 21.61 0.30 -57.59 16 21 Si 1.02 44.10 29.55 68.60 2.03 46.13 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 25 C -0.32 -14.45 9.01 22.52 0.20 -14.25 16 26 H 0.06 0.55 7.49 -2.38 -0.02 0.53 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.77 8.06 -2.39 -0.02 0.75 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 0.94 7.81 -2.39 -0.02 0.92 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.97 8.06 -2.39 -0.02 1.95 16 35 H 0.40 11.01 8.34 -92.71 -0.77 10.24 16 36 H 0.14 3.41 6.27 -2.91 -0.02 3.39 16 37 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 40 H 0.11 5.21 5.64 -2.91 -0.02 5.19 16 Total: -1.00 -73.98 327.86 3.30 -70.68 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.27 Total: 29.60 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.32 Total: -40.87 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -1.37 Total: -79.73 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.96 Total: -25.81 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -73.98 3.30 -70.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699437439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.663 kcal (2) G-P(sol) polarization free energy of solvation -73.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds