Wall clock time and date at job start Mon Mar 30 2020 07:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38287 * 119.97294 * 2 1 4 4 C 1.38248 * 120.10977 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05563 * 359.67412 * 4 3 2 6 6 C 1.38707 * 119.94282 * 0.62153 * 5 4 3 7 7 O 1.35899 * 120.05767 * 179.68069 * 6 5 4 8 8 C 1.42903 * 116.99722 * 359.72394 * 7 6 5 9 9 C 1.50702 * 109.47327 * 180.02562 * 8 7 6 10 10 O 1.21291 * 119.99680 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00409 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00120 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47495 * 34.99656 * 12 11 9 14 14 C 1.53002 * 109.47130 * 274.99902 * 12 11 9 15 15 C 1.50697 * 109.47265 * 154.99988 * 12 11 9 16 16 H 1.07999 * 119.99662 * 5.37284 * 15 12 11 17 17 C 1.37875 * 120.00120 * 185.37269 * 15 12 11 18 18 N 1.31515 * 119.99748 * 184.89036 * 17 15 12 19 19 Si 1.86794 * 120.00196 * 5.16703 * 17 15 12 20 20 H 1.48500 * 109.47373 * 269.72603 * 19 17 15 21 21 H 1.48505 * 109.47126 * 29.72474 * 19 17 15 22 22 H 1.48499 * 109.47207 * 149.72425 * 19 17 15 23 23 C 1.38129 * 119.96983 * 180.02562 * 2 1 3 24 24 C 1.50697 * 120.02592 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.46643 * 269.97799 * 1 2 3 26 26 H 1.09005 * 109.46631 * 29.97973 * 1 2 3 27 27 H 1.08994 * 109.47440 * 149.97877 * 1 2 3 28 28 H 1.07995 * 119.94431 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.97130 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.02846 * 180.30454 * 5 4 3 31 31 H 1.09002 * 109.47486 * 60.00450 * 8 7 6 32 32 H 1.09003 * 109.47118 * 299.99968 * 8 7 6 33 33 H 0.96997 * 119.99372 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47026 * 54.97693 * 14 12 11 35 35 H 1.09000 * 109.47127 * 174.97700 * 14 12 11 36 36 H 1.08997 * 109.46920 * 294.97726 * 14 12 11 37 37 H 0.97000 * 120.00553 * 355.27176 * 18 17 15 38 38 H 1.09002 * 109.46702 * 269.97338 * 24 23 2 39 39 H 1.08997 * 109.47315 * 29.98090 * 24 23 2 40 40 H 1.09000 * 109.46595 * 149.98493 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.2752 0.0070 0.0057 6 6 3.5846 -1.1959 -0.0005 7 8 4.2657 -2.3718 -0.0009 8 6 5.6927 -2.2950 -0.0009 9 6 6.2707 -3.6867 -0.0020 10 8 5.5332 -4.6497 -0.0023 11 7 7.6071 -3.8614 -0.0016 12 6 8.1690 -5.2144 -0.0033 13 1 7.5312 -5.8720 -0.5939 14 6 8.2479 -5.7356 1.4330 15 6 9.5511 -5.1836 -0.6031 16 1 10.0036 -4.2396 -0.8685 17 6 10.2379 -6.3605 -0.8130 18 7 11.4793 -6.3292 -1.2460 19 14 9.4026 -7.9998 -0.4898 20 1 9.6416 -8.4081 0.9178 21 1 7.9425 -7.8663 -0.7253 22 1 9.9597 -9.0281 -1.4049 23 6 2.1970 -1.1966 -0.0005 24 6 1.4435 -2.5016 -0.0017 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6566 2.1324 -0.0004 29 1 4.1177 2.1381 -0.0010 30 1 5.3552 0.0101 0.0103 31 1 6.0279 -1.7627 0.8893 32 1 6.0279 -1.7620 -0.8907 33 1 8.1968 -3.0913 -0.0003 34 1 7.2632 -5.6741 1.8964 35 1 8.5816 -6.7732 1.4252 36 1 8.9550 -5.1308 2.0007 37 1 11.8892 -5.4825 -1.4830 38 1 1.2618 -2.8171 1.0257 39 1 0.4911 -2.3708 -0.5155 40 1 2.0326 -3.2608 -0.5161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701288788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:46 Heat of formation + Delta-G solvation = -61.321202 kcal Electronic energy + Delta-G solvation = -20924.339416 eV Core-core repulsion = 17704.061988 eV Total energy + Delta-G solvation = -3220.277428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51594 -39.09930 -37.53902 -35.01111 -33.51743 -32.53637 -31.56860 -30.23737 -27.86470 -27.53696 -26.29040 -24.85484 -22.05900 -21.60444 -20.52764 -19.67232 -18.03656 -17.74150 -16.69547 -16.27827 -15.85170 -15.76453 -15.17658 -14.56453 -14.28707 -13.96311 -13.69482 -13.29198 -13.16799 -12.87341 -12.73433 -12.69179 -12.46735 -12.28942 -12.00919 -11.95314 -11.75516 -11.47620 -11.39768 -10.99057 -10.86517 -10.58010 -10.12249 -9.80700 -9.30004 -8.91029 -8.76842 -8.60961 -8.28870 -8.19768 -6.59893 -4.28747 1.15555 1.31649 2.81630 3.05491 3.33908 3.44030 3.57435 3.57873 4.06584 4.38245 4.61187 4.65027 4.83128 4.90551 5.01114 5.07917 5.11038 5.17316 5.21588 5.27559 5.33175 5.50453 5.58307 5.66388 5.74953 5.81676 6.18029 6.24038 6.31002 6.32268 6.39555 6.46276 6.56068 6.66322 6.83882 7.17157 7.24961 7.35181 7.56444 8.17299 8.33565 8.62619 8.84571 9.42163 10.80915 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.003318 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.488111 B = 8438.024171 C = 8938.784654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.160 4.160 4 C -0.083 4.083 5 C -0.215 4.215 6 C 0.135 3.865 7 O -0.284 6.284 8 C 0.040 3.960 9 C 0.504 3.496 10 O -0.533 6.533 11 N -0.698 5.698 12 C 0.237 3.763 13 H 0.050 0.950 14 C -0.160 4.160 15 C -0.610 4.610 16 H 0.063 0.937 17 C 0.036 3.964 18 N -0.904 5.904 19 Si 1.050 2.950 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.287 1.287 23 C -0.116 4.116 24 C -0.110 4.110 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.394 0.606 34 H 0.034 0.966 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.269 0.731 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.837 15.051 3.430 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.178 4.178 4 C -0.101 4.101 5 C -0.233 4.233 6 C 0.089 3.911 7 O -0.196 6.196 8 C -0.039 4.039 9 C 0.287 3.713 10 O -0.410 6.410 11 N -0.348 5.348 12 C 0.134 3.866 13 H 0.068 0.932 14 C -0.218 4.218 15 C -0.649 4.649 16 H 0.081 0.919 17 C -0.170 4.170 18 N -0.538 5.538 19 Si 0.879 3.121 20 H -0.207 1.207 21 H -0.199 1.199 22 H -0.213 1.213 23 C -0.117 4.117 24 C -0.166 4.166 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.227 0.773 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.158 12.482 3.430 22.300 hybrid contribution 0.553 2.466 0.026 2.528 sum -17.605 14.949 3.456 23.353 Atomic orbital electron populations 1.20865 0.90925 1.02998 1.02518 1.19574 0.95936 0.91804 0.98010 1.20881 0.94140 0.97326 1.05433 1.20874 0.94145 0.97284 0.97763 1.21260 1.00333 0.92209 1.09524 1.18906 0.91417 0.84745 0.96001 1.86173 1.18209 1.27155 1.88025 1.22606 0.80132 0.97842 1.03324 1.19921 0.83622 0.89529 0.78179 1.90700 1.59171 1.41695 1.49386 1.46152 1.04540 1.11360 1.72736 1.19252 0.94955 0.79119 0.93264 0.93230 1.22409 0.99266 1.00729 0.99399 1.22151 1.00134 0.95933 1.46647 0.91921 1.25713 0.94981 1.02730 0.93561 1.70835 1.11682 1.30023 1.41212 0.83922 0.76011 0.75360 0.76788 1.20743 1.19922 1.21343 1.19102 0.90251 0.96114 1.06190 1.20698 0.99435 0.94034 1.02462 0.90939 0.91500 0.90866 0.86114 0.85887 0.85397 0.89428 0.89364 0.77306 0.94716 0.92997 0.93021 0.92128 0.91343 0.91500 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.60 36.01 0.35 -0.54 16 2 C -0.05 -0.56 5.88 -104.64 -0.62 -1.18 16 3 C -0.16 -1.57 9.70 -39.56 -0.38 -1.95 16 4 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 5 C -0.21 -2.49 9.04 -39.43 -0.36 -2.85 16 6 C 0.14 1.87 6.66 -39.22 -0.26 1.61 16 7 O -0.28 -4.56 8.72 -39.33 -0.34 -4.91 16 8 C 0.04 0.57 5.22 36.01 0.19 0.76 16 9 C 0.50 9.70 7.87 -10.98 -0.09 9.62 16 10 O -0.53 -12.52 16.16 -14.36 -0.23 -12.75 16 11 N -0.70 -13.78 5.07 -54.93 -0.28 -14.06 16 12 C 0.24 5.66 2.14 -69.09 -0.15 5.51 16 13 H 0.05 1.31 6.08 -51.93 -0.32 0.99 16 14 C -0.16 -3.55 9.07 37.16 0.34 -3.21 16 15 C -0.61 -16.36 9.10 -34.44 -0.31 -16.67 16 16 H 0.06 1.74 7.95 -52.49 -0.42 1.32 16 17 C 0.04 1.01 5.43 -17.82 -0.10 0.91 16 18 N -0.90 -26.92 13.70 55.43 0.76 -26.16 16 19 Si 1.05 25.36 25.28 -169.99 -4.30 21.06 16 20 H -0.28 -6.40 6.82 56.52 0.39 -6.02 16 21 H -0.27 -6.43 6.35 56.52 0.36 -6.07 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.12 -1.47 5.89 -104.47 -0.62 -2.09 16 24 C -0.11 -1.29 9.38 36.00 0.34 -0.95 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 31 H 0.09 1.01 7.65 -51.93 -0.40 0.62 16 32 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16 33 H 0.39 6.64 8.53 -40.82 -0.35 6.29 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 1.16 4.41 -51.93 -0.23 0.93 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.27 7.89 8.72 -40.82 -0.36 7.53 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.62 5.94 -51.93 -0.31 0.31 16 40 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -32.77 327.72 -7.13 -39.90 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.61 Total: 4.23 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.06 Total: -12.24 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.48 Total: -40.22 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.57 Total: -17.66 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.30 Total: 21.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.77 -7.13 -39.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701288788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.417 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds