Wall clock time and date at job start Mon Mar 30 2020 07:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38287 * 119.97294 * 2 1 4 4 C 1.38248 * 120.10977 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05563 * 359.67412 * 4 3 2 6 6 C 1.38707 * 119.94282 * 0.62153 * 5 4 3 7 7 O 1.35899 * 120.05767 * 179.68069 * 6 5 4 8 8 C 1.42903 * 116.99722 * 359.72394 * 7 6 5 9 9 C 1.50702 * 109.47327 * 180.02562 * 8 7 6 10 10 O 1.21291 * 119.99680 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00409 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00120 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47495 * 34.99656 * 12 11 9 14 14 C 1.53002 * 109.47130 * 274.99902 * 12 11 9 15 15 C 1.50697 * 109.47265 * 154.99988 * 12 11 9 16 16 H 1.07999 * 119.99662 * 5.37284 * 15 12 11 17 17 C 1.37875 * 120.00120 * 185.37269 * 15 12 11 18 18 N 1.31515 * 119.99748 * 184.89036 * 17 15 12 19 19 Si 1.86794 * 120.00196 * 5.16703 * 17 15 12 20 20 H 1.48500 * 109.47373 * 269.72603 * 19 17 15 21 21 H 1.48505 * 109.47126 * 29.72474 * 19 17 15 22 22 H 1.48499 * 109.47207 * 149.72425 * 19 17 15 23 23 C 1.38129 * 119.96983 * 180.02562 * 2 1 3 24 24 C 1.50697 * 120.02592 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.46643 * 269.97799 * 1 2 3 26 26 H 1.09005 * 109.46631 * 29.97973 * 1 2 3 27 27 H 1.08994 * 109.47440 * 149.97877 * 1 2 3 28 28 H 1.07995 * 119.94431 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.97130 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.02846 * 180.30454 * 5 4 3 31 31 H 1.09002 * 109.47486 * 60.00450 * 8 7 6 32 32 H 1.09003 * 109.47118 * 299.99968 * 8 7 6 33 33 H 0.96997 * 119.99372 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47026 * 54.97693 * 14 12 11 35 35 H 1.09000 * 109.47127 * 174.97700 * 14 12 11 36 36 H 1.08997 * 109.46920 * 294.97726 * 14 12 11 37 37 H 0.97000 * 120.00553 * 355.27176 * 18 17 15 38 38 H 1.09002 * 109.46702 * 269.97338 * 24 23 2 39 39 H 1.08997 * 109.47315 * 29.98090 * 24 23 2 40 40 H 1.09000 * 109.46595 * 149.98493 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.2752 0.0070 0.0057 6 6 3.5846 -1.1959 -0.0005 7 8 4.2657 -2.3718 -0.0009 8 6 5.6927 -2.2950 -0.0009 9 6 6.2707 -3.6867 -0.0020 10 8 5.5332 -4.6497 -0.0023 11 7 7.6071 -3.8614 -0.0016 12 6 8.1690 -5.2144 -0.0033 13 1 7.5312 -5.8720 -0.5939 14 6 8.2479 -5.7356 1.4330 15 6 9.5511 -5.1836 -0.6031 16 1 10.0036 -4.2396 -0.8685 17 6 10.2379 -6.3605 -0.8130 18 7 11.4793 -6.3292 -1.2460 19 14 9.4026 -7.9998 -0.4898 20 1 9.6416 -8.4081 0.9178 21 1 7.9425 -7.8663 -0.7253 22 1 9.9597 -9.0281 -1.4049 23 6 2.1970 -1.1966 -0.0005 24 6 1.4435 -2.5016 -0.0017 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6566 2.1324 -0.0004 29 1 4.1177 2.1381 -0.0010 30 1 5.3552 0.0101 0.0103 31 1 6.0279 -1.7627 0.8893 32 1 6.0279 -1.7620 -0.8907 33 1 8.1968 -3.0913 -0.0003 34 1 7.2632 -5.6741 1.8964 35 1 8.5816 -6.7732 1.4252 36 1 8.9550 -5.1308 2.0007 37 1 11.8892 -5.4825 -1.4830 38 1 1.2618 -2.8171 1.0257 39 1 0.4911 -2.3708 -0.5155 40 1 2.0326 -3.2608 -0.5161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701288788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:46 Heat of formation + Delta-G solvation = -82.424835 kcal Electronic energy + Delta-G solvation = -20925.254538 eV Core-core repulsion = 17704.061988 eV Total energy + Delta-G solvation = -3221.192551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53480 -40.52050 -38.60338 -36.84995 -34.54363 -34.29543 -32.56362 -31.84844 -29.13117 -28.29870 -27.13964 -26.86112 -23.38539 -22.63488 -21.79995 -21.25720 -19.84922 -18.89277 -18.04798 -17.45843 -17.17181 -16.83222 -16.49159 -15.76749 -15.55016 -15.15280 -14.85800 -14.83686 -14.62228 -14.28864 -14.01371 -13.67747 -13.62596 -13.56636 -13.42198 -13.34801 -12.87597 -12.64537 -12.49973 -12.22256 -12.00878 -11.93480 -11.71980 -11.65638 -11.00266 -10.88128 -10.73116 -10.03615 -9.55835 -9.09971 -8.81423 -6.50797 0.35441 0.46994 1.40139 1.50374 1.54646 1.62848 1.67564 2.38144 2.76071 2.76876 3.01225 3.62211 3.83406 3.91459 3.98201 4.05881 4.14697 4.25898 4.34084 4.45124 4.48715 4.61304 4.68428 4.70526 4.75114 4.85763 4.88526 4.96844 4.98979 5.13974 5.36660 5.37382 5.42501 5.50249 5.51909 5.57188 5.66881 5.88171 5.96746 6.37451 6.47507 6.70568 7.21469 7.31292 8.58899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.003318 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.488111 B = 8438.024171 C = 8938.784654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.159 4.159 4 C -0.085 4.085 5 C -0.222 4.222 6 C 0.105 3.895 7 O -0.315 6.315 8 C 0.051 3.949 9 C 0.502 3.498 10 O -0.580 6.580 11 N -0.695 5.695 12 C 0.239 3.761 13 H 0.025 0.975 14 C -0.154 4.154 15 C -0.604 4.604 16 H 0.046 0.954 17 C -0.009 4.009 18 N -0.934 5.934 19 Si 1.080 2.920 20 H -0.256 1.256 21 H -0.269 1.269 22 H -0.286 1.286 23 C -0.141 4.141 24 C -0.106 4.106 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.409 0.591 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.368 17.185 4.245 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.177 4.177 4 C -0.102 4.102 5 C -0.240 4.240 6 C 0.060 3.940 7 O -0.228 6.228 8 C -0.027 4.027 9 C 0.289 3.711 10 O -0.460 6.460 11 N -0.346 5.346 12 C 0.134 3.866 13 H 0.042 0.958 14 C -0.212 4.212 15 C -0.642 4.642 16 H 0.064 0.936 17 C -0.209 4.209 18 N -0.570 5.570 19 Si 0.904 3.096 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.213 1.213 23 C -0.142 4.142 24 C -0.162 4.162 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.161 0.839 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.245 0.755 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.684 14.671 4.257 24.916 hybrid contribution 0.958 1.954 -0.260 2.191 sum -18.726 16.624 3.996 25.357 Atomic orbital electron populations 1.20933 0.88901 1.03989 1.03423 1.19945 0.97508 0.91305 0.97011 1.21299 0.94403 0.98136 1.03896 1.21270 0.94579 0.97828 0.96561 1.21506 1.01268 0.91935 1.09299 1.19210 0.91944 0.84702 0.98173 1.86111 1.18728 1.29025 1.88943 1.22527 0.79910 0.94242 1.06064 1.20715 0.82805 0.91244 0.76383 1.90675 1.60124 1.43871 1.51345 1.45930 1.05387 1.10414 1.72838 1.18939 0.92809 0.81033 0.93795 0.95753 1.22297 1.00076 1.00690 0.98124 1.22325 1.01243 0.95085 1.45564 0.93575 1.26821 0.94905 1.05926 0.93250 1.70930 1.12954 1.29506 1.43585 0.83533 0.75442 0.72534 0.78121 1.18152 1.19410 1.21263 1.19394 0.90344 0.97104 1.07329 1.20652 0.99956 0.93294 1.02315 0.89951 0.89698 0.90714 0.83362 0.83122 0.83861 0.86180 0.86764 0.75535 0.93814 0.93194 0.92025 0.93186 0.91411 0.89312 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.60 71.24 0.68 -0.76 16 2 C -0.06 -1.09 5.88 -19.88 -0.12 -1.21 16 3 C -0.16 -2.61 9.70 22.28 0.22 -2.40 16 4 C -0.08 -1.43 10.04 22.25 0.22 -1.21 16 5 C -0.22 -4.65 9.04 22.36 0.20 -4.45 16 6 C 0.10 2.81 6.66 22.51 0.15 2.96 16 7 O -0.31 -10.08 8.72 -73.37 -0.64 -10.72 16 8 C 0.05 1.37 5.22 71.24 0.37 1.75 16 9 C 0.50 19.10 7.87 87.66 0.69 19.79 16 10 O -0.58 -27.66 16.16 15.97 0.26 -27.40 16 11 N -0.69 -26.92 5.07 -446.09 -2.26 -29.18 16 12 C 0.24 11.33 2.14 44.25 0.09 11.43 16 13 H 0.02 1.30 6.08 -2.39 -0.01 1.29 16 14 C -0.15 -6.64 9.07 71.98 0.65 -5.99 16 15 C -0.60 -32.49 9.10 25.60 0.23 -32.26 16 16 H 0.05 2.58 7.95 -2.91 -0.02 2.56 16 17 C -0.01 -0.51 5.43 84.65 0.46 -0.05 16 18 N -0.93 -56.35 13.70 21.45 0.29 -56.06 16 19 Si 1.08 50.87 25.28 68.60 1.73 52.60 16 20 H -0.26 -11.02 6.82 99.48 0.68 -10.34 16 21 H -0.27 -12.37 6.35 99.48 0.63 -11.74 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 C -0.14 -3.48 5.89 -19.77 -0.12 -3.59 16 24 C -0.11 -2.50 9.38 71.23 0.67 -1.83 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.75 8.09 -2.38 -0.02 0.74 16 27 H 0.07 0.90 5.94 -2.39 -0.01 0.89 16 28 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 29 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.14 2.40 6.30 -2.91 -0.02 2.38 16 31 H 0.12 2.46 7.65 -2.39 -0.02 2.44 16 32 H 0.11 2.49 7.67 -2.39 -0.02 2.47 16 33 H 0.41 13.27 8.53 -92.71 -0.79 12.48 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 2.16 4.41 -2.39 -0.01 2.15 16 36 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.26 15.57 8.72 -92.71 -0.81 14.76 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.60 5.94 -2.39 -0.01 1.58 16 40 H 0.05 1.34 7.53 -2.39 -0.02 1.32 16 Total: -1.00 -72.39 327.72 3.92 -68.47 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.13 Total: 20.12 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 4.41 Total: -17.84 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -1.97 Total: -85.23 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.38 Total: -38.12 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.73 Total: 52.60 kcal Total: -72.39 3.92 -68.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701288788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.957 kcal (2) G-P(sol) polarization free energy of solvation -72.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds