Wall clock time and date at job start Mon Mar 30 2020 07:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.97378 * 2 1 4 4 C 1.38239 * 120.11572 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05201 * 0.04215 * 4 3 2 6 6 C 1.38705 * 119.94752 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.06154 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99694 * 359.97438 * 7 6 5 9 9 C 1.50703 * 109.47357 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99733 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00010 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00122 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47636 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47521 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99433 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99942 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00280 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99744 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46905 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47025 * 120.00259 * 18 16 14 21 21 H 1.48498 * 109.47016 * 240.00432 * 18 16 14 22 22 C 1.38121 * 119.97413 * 180.02562 * 2 1 3 23 23 C 1.50705 * 120.02769 * 0.27127 * 22 2 1 24 24 H 1.09001 * 109.47297 * 269.98097 * 1 2 3 25 25 H 1.09004 * 109.47353 * 29.98231 * 1 2 3 26 26 H 1.09000 * 109.47209 * 149.97656 * 1 2 3 27 27 H 1.08000 * 119.94132 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.98060 * 180.02562 * 4 3 2 29 29 H 1.08005 * 120.02538 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47292 * 300.00273 * 8 7 6 31 31 H 1.08998 * 109.47042 * 60.00021 * 8 7 6 32 32 H 0.96998 * 120.00276 * 359.97438 * 11 9 8 33 33 H 1.09008 * 109.46577 * 299.99747 * 12 11 9 34 34 H 1.09001 * 109.47055 * 59.99159 * 12 11 9 35 35 H 1.08999 * 109.47186 * 299.99869 * 13 12 11 36 36 H 1.09006 * 109.46827 * 59.99798 * 13 12 11 37 37 H 0.97002 * 120.00063 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47390 * 269.73245 * 23 22 2 39 39 H 1.09008 * 109.46550 * 29.72586 * 23 22 2 40 40 H 1.08995 * 109.47476 * 149.72521 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0071 0.0002 6 6 3.5846 -1.1958 -0.0002 7 8 4.2657 -2.3718 0.0000 8 6 5.6927 -2.2949 0.0000 9 6 6.2707 -3.6867 -0.0004 10 8 5.5333 -4.6496 -0.0002 11 7 7.6071 -3.8613 0.0000 12 6 8.1691 -5.2142 -0.0009 13 6 9.6968 -5.1320 -0.0008 14 6 10.2749 -6.5237 -0.0012 15 1 9.6182 -7.3811 -0.0019 16 6 11.6420 -6.7023 -0.0017 17 7 12.4416 -5.6582 -0.0013 18 14 12.3585 -8.4275 -0.0028 19 1 11.2554 -9.4216 -0.0037 20 1 13.1945 -8.6154 -1.2156 21 1 13.1951 -8.6168 1.2093 22 6 2.1970 -1.1965 -0.0005 23 6 1.4435 -2.5016 -0.0073 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8902 -0.5136 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1382 0.0010 29 1 5.3552 0.0103 0.0010 30 1 6.0279 -1.7624 -0.8900 31 1 6.0278 -1.7622 0.8899 32 1 8.1969 -3.0912 0.0003 33 1 7.8335 -5.7476 0.8885 34 1 7.8342 -5.7461 -0.8915 35 1 10.0320 -4.5987 -0.8904 36 1 10.0319 -4.5999 0.8896 37 1 13.4034 -5.7839 -0.0013 38 1 1.2618 -2.8216 1.0187 39 1 0.4911 -2.3686 -0.5205 40 1 2.0326 -3.2586 -0.5251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706326271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:41 Heat of formation + Delta-G solvation = -68.214442 kcal Electronic energy + Delta-G solvation = -20278.283059 eV Core-core repulsion = 17057.706717 eV Total energy + Delta-G solvation = -3220.576342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60205 -39.24230 -37.61358 -34.91930 -33.56962 -32.91805 -31.63939 -30.16394 -28.15224 -27.59126 -26.39551 -24.61053 -21.98976 -21.50313 -20.92696 -20.05298 -18.01371 -17.05777 -16.47231 -16.42733 -15.93879 -15.81527 -15.00011 -14.80083 -14.49180 -14.32217 -14.14541 -13.52573 -13.23452 -13.15054 -12.85254 -12.74618 -12.55223 -12.33968 -12.04274 -11.99924 -11.45632 -11.25027 -11.13659 -11.04781 -10.92943 -10.65806 -10.39489 -9.85175 -9.52615 -9.23807 -8.81907 -8.63516 -8.42339 -8.26803 -6.13126 -4.16050 1.10395 1.25929 2.66102 2.82141 3.26438 3.34205 3.39360 3.52482 3.84917 4.38908 4.55583 4.58221 4.77033 4.80222 4.94913 4.98152 4.98459 5.05493 5.21206 5.24258 5.29307 5.45966 5.52760 5.61270 5.69736 5.77051 6.12567 6.18215 6.24636 6.27021 6.28269 6.41172 6.60429 6.66777 6.78741 7.22934 7.46628 7.55845 7.84421 7.87223 8.22669 8.50516 8.90050 9.49192 10.98486 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.002545 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.645828 B =10998.725638 C =11544.016844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.158 4.158 4 C -0.082 4.082 5 C -0.214 4.214 6 C 0.134 3.866 7 O -0.285 6.285 8 C 0.040 3.960 9 C 0.508 3.492 10 O -0.527 6.527 11 N -0.718 5.718 12 C 0.123 3.877 13 C 0.012 3.988 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.115 4.115 23 C -0.110 4.110 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.600 15.758 0.001 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.176 4.176 4 C -0.100 4.100 5 C -0.233 4.233 6 C 0.088 3.912 7 O -0.197 6.197 8 C -0.039 4.039 9 C 0.291 3.709 10 O -0.403 6.403 11 N -0.370 5.370 12 C 0.001 3.999 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.116 4.116 23 C -0.167 4.167 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.020 14.865 -0.001 24.935 hybrid contribution 1.233 -0.158 0.019 1.243 sum -18.787 14.707 0.017 23.859 Atomic orbital electron populations 1.20869 0.90893 1.03023 1.02561 1.19579 0.95967 0.91801 0.97961 1.20895 0.94158 0.97357 1.05238 1.20882 0.94146 0.97323 0.97689 1.21259 1.00337 0.92188 1.09485 1.18881 0.91389 0.84639 0.96282 1.86161 1.18026 1.27304 1.88184 1.22566 0.80373 0.97322 1.03644 1.19935 0.83248 0.89809 0.77896 1.90724 1.59132 1.41813 1.48665 1.46196 1.05310 1.11391 1.74084 1.21784 0.96996 0.80014 1.01061 1.19341 0.86898 0.98360 0.97933 1.21080 0.91647 0.91975 1.51327 0.92136 1.24999 0.97165 0.97214 0.94941 1.69959 1.03611 1.29317 1.50402 0.86447 0.79139 0.84299 0.77636 1.19555 1.20914 1.20907 1.19096 0.90222 0.96116 1.06121 1.20704 0.99458 0.93992 1.02506 0.90900 0.91470 0.90860 0.86071 0.85820 0.85343 0.89136 0.89119 0.76749 0.92318 0.92329 0.95850 0.95852 0.92861 0.91309 0.91465 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.61 36.00 0.35 -0.47 16 2 C -0.05 -0.52 5.88 -104.65 -0.62 -1.14 16 3 C -0.16 -1.44 9.70 -39.56 -0.38 -1.82 16 4 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 5 C -0.21 -2.27 9.04 -39.43 -0.36 -2.63 16 6 C 0.13 1.71 6.66 -39.22 -0.26 1.45 16 7 O -0.28 -4.18 8.72 -39.33 -0.34 -4.52 16 8 C 0.04 0.50 5.22 36.01 0.19 0.69 16 9 C 0.51 8.57 7.91 -10.99 -0.09 8.48 16 10 O -0.53 -11.25 16.50 -14.35 -0.24 -11.49 16 11 N -0.72 -12.01 5.56 -60.29 -0.33 -12.35 16 12 C 0.12 2.57 5.61 -4.04 -0.02 2.54 16 13 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 14 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 15 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 18 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.11 -1.35 5.89 -104.47 -0.62 -1.97 16 23 C -0.11 -1.19 9.38 36.01 0.34 -0.86 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 27 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.13 1.12 6.30 -52.48 -0.33 0.78 16 30 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 31 H 0.09 0.90 7.66 -51.93 -0.40 0.51 16 32 H 0.40 5.50 8.47 -40.82 -0.35 5.15 16 33 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.57 5.94 -51.92 -0.31 0.27 16 40 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -32.90 338.12 -8.35 -41.25 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.82 Total: 0.72 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.42 Total: -9.82 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.40 Total: -37.44 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.58 Total: -16.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.90 -8.35 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706326271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.966 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds