Wall clock time and date at job start Mon Mar 30 2020 07:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.97378 * 2 1 4 4 C 1.38239 * 120.11572 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05201 * 0.04215 * 4 3 2 6 6 C 1.38705 * 119.94752 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.06154 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99694 * 359.97438 * 7 6 5 9 9 C 1.50703 * 109.47357 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99733 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00010 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00122 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47636 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47521 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99433 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99942 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00280 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99744 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46905 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47025 * 120.00259 * 18 16 14 21 21 H 1.48498 * 109.47016 * 240.00432 * 18 16 14 22 22 C 1.38121 * 119.97413 * 180.02562 * 2 1 3 23 23 C 1.50705 * 120.02769 * 0.27127 * 22 2 1 24 24 H 1.09001 * 109.47297 * 269.98097 * 1 2 3 25 25 H 1.09004 * 109.47353 * 29.98231 * 1 2 3 26 26 H 1.09000 * 109.47209 * 149.97656 * 1 2 3 27 27 H 1.08000 * 119.94132 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.98060 * 180.02562 * 4 3 2 29 29 H 1.08005 * 120.02538 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47292 * 300.00273 * 8 7 6 31 31 H 1.08998 * 109.47042 * 60.00021 * 8 7 6 32 32 H 0.96998 * 120.00276 * 359.97438 * 11 9 8 33 33 H 1.09008 * 109.46577 * 299.99747 * 12 11 9 34 34 H 1.09001 * 109.47055 * 59.99159 * 12 11 9 35 35 H 1.08999 * 109.47186 * 299.99869 * 13 12 11 36 36 H 1.09006 * 109.46827 * 59.99798 * 13 12 11 37 37 H 0.97002 * 120.00063 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47390 * 269.73245 * 23 22 2 39 39 H 1.09008 * 109.46550 * 29.72586 * 23 22 2 40 40 H 1.08995 * 109.47476 * 149.72521 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0071 0.0002 6 6 3.5846 -1.1958 -0.0002 7 8 4.2657 -2.3718 0.0000 8 6 5.6927 -2.2949 0.0000 9 6 6.2707 -3.6867 -0.0004 10 8 5.5333 -4.6496 -0.0002 11 7 7.6071 -3.8613 0.0000 12 6 8.1691 -5.2142 -0.0009 13 6 9.6968 -5.1320 -0.0008 14 6 10.2749 -6.5237 -0.0012 15 1 9.6182 -7.3811 -0.0019 16 6 11.6420 -6.7023 -0.0017 17 7 12.4416 -5.6582 -0.0013 18 14 12.3585 -8.4275 -0.0028 19 1 11.2554 -9.4216 -0.0037 20 1 13.1945 -8.6154 -1.2156 21 1 13.1951 -8.6168 1.2093 22 6 2.1970 -1.1965 -0.0005 23 6 1.4435 -2.5016 -0.0073 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8902 -0.5136 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1382 0.0010 29 1 5.3552 0.0103 0.0010 30 1 6.0279 -1.7624 -0.8900 31 1 6.0278 -1.7622 0.8899 32 1 8.1969 -3.0912 0.0003 33 1 7.8335 -5.7476 0.8885 34 1 7.8342 -5.7461 -0.8915 35 1 10.0320 -4.5987 -0.8904 36 1 10.0319 -4.5999 0.8896 37 1 13.4034 -5.7839 -0.0013 38 1 1.2618 -2.8216 1.0187 39 1 0.4911 -2.3686 -0.5205 40 1 2.0326 -3.2586 -0.5251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706326271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:41 Heat of formation + Delta-G solvation = -88.130538 kcal Electronic energy + Delta-G solvation = -20279.146686 eV Core-core repulsion = 17057.706717 eV Total energy + Delta-G solvation = -3221.439969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53122 -40.50561 -38.56717 -36.62213 -34.87024 -34.28546 -32.51519 -31.79585 -29.43117 -28.28973 -27.21684 -26.42365 -23.17893 -22.66692 -22.24943 -21.21807 -18.99989 -18.48487 -18.16305 -17.49017 -17.00335 -16.76624 -16.45985 -16.18825 -16.14973 -15.19152 -15.05611 -14.81747 -14.55116 -14.31402 -14.00472 -13.63577 -13.62369 -13.34656 -13.23847 -13.00914 -12.86043 -12.64399 -12.53692 -12.27514 -12.21073 -11.92221 -11.73317 -11.62810 -11.45032 -10.91335 -10.62274 -10.11458 -9.54438 -9.08742 -8.25585 -6.35608 0.36967 0.48302 1.40240 1.41360 1.47839 1.53093 1.58272 2.39113 2.71749 2.78094 3.09491 3.58493 3.84642 3.92267 4.00697 4.07446 4.16181 4.26966 4.34520 4.46607 4.47081 4.50184 4.69150 4.76268 4.82905 4.86624 4.89884 4.97768 5.14637 5.20910 5.38148 5.43401 5.45636 5.53336 5.56839 5.68048 5.76853 5.88741 6.14590 6.36316 6.54712 6.77610 7.15844 7.33788 8.86318 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.002545 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.645828 B =10998.725638 C =11544.016844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.059 4.059 3 C -0.160 4.160 4 C -0.085 4.085 5 C -0.220 4.220 6 C 0.105 3.895 7 O -0.316 6.316 8 C 0.048 3.952 9 C 0.507 3.493 10 O -0.578 6.578 11 N -0.709 5.709 12 C 0.141 3.859 13 C 0.023 3.977 14 C -0.547 4.547 15 H 0.057 0.943 16 C 0.008 3.992 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.140 4.140 23 C -0.106 4.106 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.416 0.584 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.012 0.988 36 H 0.012 0.988 37 H 0.266 0.734 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.151 17.513 0.003 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.178 4.178 4 C -0.103 4.103 5 C -0.239 4.239 6 C 0.060 3.940 7 O -0.229 6.229 8 C -0.030 4.030 9 C 0.293 3.707 10 O -0.457 6.457 11 N -0.361 5.361 12 C 0.018 3.982 13 C -0.015 4.015 14 C -0.585 4.585 15 H 0.076 0.924 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.141 4.141 23 C -0.163 4.163 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.252 0.748 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.568 16.663 0.001 26.471 hybrid contribution 1.349 -0.616 0.019 1.484 sum -19.218 16.047 0.019 25.037 Atomic orbital electron populations 1.20931 0.89007 1.03970 1.03375 1.19935 0.97461 0.91370 0.97103 1.21295 0.94476 0.98098 1.03896 1.21272 0.94528 0.97924 0.96550 1.21522 1.01376 0.91832 1.09146 1.19177 0.91871 0.84692 0.98234 1.86103 1.18801 1.29002 1.89000 1.22559 0.79907 0.94011 1.06489 1.20705 0.82538 0.91332 0.76095 1.90701 1.60189 1.43977 1.50842 1.45937 1.05935 1.10380 1.73897 1.21269 0.94867 0.82111 0.99981 1.19145 0.88879 0.96791 0.96664 1.21491 0.92256 0.93297 1.51482 0.92431 1.25846 0.97574 1.01263 0.94442 1.70049 1.04039 1.31362 1.51023 0.85411 0.78350 0.79455 0.77921 1.19111 1.20203 1.20192 1.19378 0.90411 0.97008 1.07293 1.20658 0.99985 0.93351 1.02281 0.90036 0.89753 0.90703 0.83502 0.83144 0.83578 0.86098 0.86074 0.74769 0.93456 0.93465 0.96965 0.96969 0.92507 0.91512 0.89379 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.61 71.23 0.68 -0.68 16 2 C -0.06 -1.05 5.88 -19.88 -0.12 -1.17 16 3 C -0.16 -2.46 9.70 22.28 0.22 -2.24 16 4 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 5 C -0.22 -4.22 9.04 22.37 0.20 -4.01 16 6 C 0.11 2.62 6.66 22.51 0.15 2.77 16 7 O -0.32 -9.29 8.72 -73.37 -0.64 -9.93 16 8 C 0.05 1.14 5.22 71.24 0.37 1.52 16 9 C 0.51 17.09 7.91 87.66 0.69 17.78 16 10 O -0.58 -25.39 16.50 16.00 0.26 -25.13 16 11 N -0.71 -23.53 5.56 -463.06 -2.57 -26.10 16 12 C 0.14 5.99 5.61 86.38 0.48 6.48 16 13 C 0.02 1.12 5.09 29.85 0.15 1.27 16 14 C -0.55 -30.33 9.11 25.60 0.23 -30.09 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 16 C 0.01 0.42 5.46 84.65 0.46 0.89 16 17 N -0.93 -53.58 13.29 21.44 0.28 -53.30 16 18 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 C -0.14 -3.25 5.89 -19.77 -0.12 -3.37 16 23 C -0.11 -2.37 9.38 71.24 0.67 -1.70 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.70 8.09 -2.38 -0.02 0.68 16 26 H 0.07 0.84 5.94 -2.39 -0.01 0.83 16 27 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 28 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.15 2.11 6.30 -2.91 -0.02 2.09 16 30 H 0.12 2.12 7.66 -2.39 -0.02 2.10 16 31 H 0.12 2.12 7.66 -2.39 -0.02 2.10 16 32 H 0.42 11.01 8.47 -92.71 -0.79 10.23 16 33 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.01 0.61 8.14 -2.38 -0.02 0.60 16 37 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.48 5.94 -2.38 -0.01 1.47 16 40 H 0.05 1.30 7.54 -2.39 -0.02 1.28 16 Total: -1.00 -72.33 338.12 3.93 -68.41 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.26 Total: 14.24 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.31 Total: -13.67 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.29 Total: -79.40 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.38 Total: -35.06 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.33 3.93 -68.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706326271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.725 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds