Wall clock time and date at job start Mon Mar 30 2020 08:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34677 * 117.00419 * 270.00359 * 13 3 2 15 15 O 1.21426 * 119.99888 * 0.02562 * 14 13 3 16 16 C 1.48069 * 120.00011 * 179.97438 * 14 13 3 17 17 C 1.39354 * 119.72397 * 179.72423 * 16 14 13 18 18 C 1.38592 * 119.05175 * 179.77336 * 17 16 14 19 19 C 1.38623 * 118.49255 * 0.49685 * 18 17 16 20 20 C 1.50702 * 120.32126 * 179.76906 * 19 18 17 21 21 C 1.53004 * 109.46801 * 119.97478 * 20 19 18 22 22 C 1.52992 * 109.46951 * 239.97778 * 20 19 18 23 23 C 1.38585 * 119.35741 * 359.74695 * 19 18 17 24 24 N 1.31501 * 120.90785 * 0.02562 * 23 19 18 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 1.08002 * 120.47093 * 359.97438 * 17 16 14 32 32 H 1.08000 * 120.75115 * 180.24397 * 18 17 16 33 33 H 1.08999 * 109.46726 * 359.97438 * 20 19 18 34 34 H 1.09003 * 109.46723 * 60.00335 * 21 20 19 35 35 H 1.09002 * 109.46403 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.47100 * 300.00155 * 21 20 19 37 37 H 1.08997 * 109.47576 * 60.00128 * 22 20 19 38 38 H 1.09003 * 109.46952 * 180.02562 * 22 20 19 39 39 H 1.08999 * 109.47230 * 299.99472 * 22 20 19 40 40 H 1.08002 * 119.54632 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6559 2.0916 1.2407 14 6 0.4688 2.7275 1.2561 15 8 -0.2267 2.7391 0.2608 16 6 0.0112 3.4115 2.4870 17 6 -1.2156 4.0725 2.4948 18 6 -1.6324 4.7041 3.6559 19 6 -0.8032 4.6615 4.7660 20 6 -1.2134 5.3387 6.0484 21 6 -1.2967 4.3006 7.1692 22 6 -0.1788 6.4042 6.4158 23 6 0.4062 3.9898 4.6853 24 7 0.7756 3.3950 3.5722 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 -1.8341 4.0897 1.6096 32 1 -2.5798 5.2211 3.6937 33 1 -2.1877 5.8090 5.9153 34 1 -0.3223 3.8304 7.3021 35 1 -1.5929 4.7906 8.0968 36 1 -2.0338 3.5415 6.9073 37 1 -0.1194 7.1437 5.6173 38 1 -0.4751 6.8937 7.3436 39 1 0.7956 5.9340 6.5489 40 1 1.0548 3.9551 5.5483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810710655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:33 Heat of formation + Delta-G solvation = -71.267234 kcal Electronic energy + Delta-G solvation = -21304.481093 eV Core-core repulsion = 18083.772373 eV Total energy + Delta-G solvation = -3220.708721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61384 -39.19021 -36.18399 -35.64757 -33.45565 -32.33026 -31.35285 -30.38201 -27.44852 -27.29159 -24.99245 -23.86229 -23.11979 -21.42739 -20.44360 -19.60741 -17.71985 -17.05185 -16.43694 -15.71103 -15.47714 -15.33098 -14.65795 -14.49011 -14.25974 -14.12630 -13.48371 -13.23807 -13.08733 -12.83655 -12.75685 -12.48588 -12.02688 -11.52305 -11.43153 -11.38431 -11.32580 -11.14127 -11.12177 -10.93427 -10.60455 -10.23964 -9.98105 -9.90785 -9.71475 -9.36220 -9.32365 -9.02112 -8.75122 -8.41442 -6.14273 -4.20358 0.65014 1.21990 2.95235 3.27095 3.33091 3.37592 3.50245 3.98015 4.22977 4.36455 4.46910 4.54189 4.76739 4.85833 4.99714 5.08963 5.17113 5.21467 5.32454 5.50089 5.51345 5.52733 5.69687 5.73618 5.85479 5.92549 6.05660 6.15285 6.26022 6.33150 6.47378 6.55823 6.90240 6.98159 7.19921 7.24984 7.64594 7.76715 7.82541 7.98657 8.19757 8.65488 8.93726 9.44379 10.92783 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025939 B = 0.003969 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.176382 B = 7052.158523 C = 7664.871466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.048 0.952 5 C -0.517 4.517 6 H 0.070 0.930 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.328 6.328 14 C 0.508 3.492 15 O -0.508 6.508 16 C 0.100 3.900 17 C -0.110 4.110 18 C -0.085 4.085 19 C -0.113 4.113 20 C -0.053 4.053 21 C -0.147 4.147 22 C -0.147 4.147 23 C 0.098 3.902 24 N -0.426 5.426 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.110 0.890 30 H 0.265 0.735 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 9.101 15.816 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.065 0.935 5 C -0.555 4.555 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.242 6.242 14 C 0.351 3.649 15 O -0.398 6.398 16 C -0.037 4.037 17 C -0.130 4.130 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.072 4.072 21 C -0.204 4.204 22 C -0.204 4.204 23 C -0.062 4.062 24 N -0.137 5.137 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.075 0.925 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.641 8.509 15.222 19.926 hybrid contribution 0.036 0.324 -0.269 0.423 sum -9.605 8.832 14.952 19.846 Atomic orbital electron populations 1.21863 0.98454 0.99052 1.00647 1.22021 0.92582 0.99299 1.03461 1.20776 0.95243 0.88863 0.78601 0.93454 1.21094 0.89611 1.38657 1.06184 0.91134 1.24881 0.99243 0.94804 0.95054 1.69898 1.35260 1.38074 1.09499 0.86226 0.83940 0.77850 0.78189 1.19435 1.20731 1.20800 1.86659 1.32676 1.61321 1.43580 1.20594 0.81472 0.76877 0.85988 1.90784 1.55848 1.58890 1.34272 1.20540 0.92320 0.98434 0.92361 1.22139 0.95864 0.95406 0.99578 1.21455 0.99726 0.98156 0.91775 1.21166 0.95771 0.98279 0.96266 1.20110 0.99863 0.95755 0.91445 1.21885 1.02590 0.98542 0.97377 1.21882 0.98831 0.98189 1.01506 1.22717 0.94193 0.93612 0.95690 1.67787 1.32437 1.14826 0.98621 0.95099 0.94740 0.92770 0.93848 0.87236 0.92493 0.83273 0.84187 0.90105 0.92054 0.92050 0.92386 0.92365 0.92051 0.92047 0.82362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.56 37.16 0.32 -2.91 16 2 C -0.14 -3.48 5.49 -26.73 -0.15 -3.63 16 3 C 0.22 5.99 2.25 -27.89 -0.06 5.93 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.93 8.90 -34.44 -0.31 -15.23 16 6 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.45 11.29 55.43 0.63 -24.82 16 9 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 O -0.33 -8.40 9.62 -40.43 -0.39 -8.79 16 14 C 0.51 11.49 6.40 34.76 0.22 11.71 16 15 O -0.51 -12.01 13.50 -19.21 -0.26 -12.27 16 16 C 0.10 1.84 6.75 -83.02 -0.56 1.27 16 17 C -0.11 -1.57 9.63 -39.04 -0.38 -1.95 16 18 C -0.09 -0.93 9.79 -39.31 -0.39 -1.31 16 19 C -0.11 -1.19 4.80 -104.35 -0.50 -1.69 16 20 C -0.05 -0.38 3.11 -91.77 -0.29 -0.67 16 21 C -0.15 -0.97 9.01 37.16 0.33 -0.64 16 22 C -0.15 -0.98 9.01 37.15 0.33 -0.65 16 23 C 0.10 1.27 9.90 -17.56 -0.17 1.10 16 24 N -0.43 -7.52 10.12 -9.81 -0.10 -7.61 16 25 H 0.03 0.68 6.06 -51.93 -0.31 0.36 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.26 7.79 -51.93 -0.40 0.86 16 28 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.11 3.01 5.95 -51.93 -0.31 2.70 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.15 2.01 7.64 -52.49 -0.40 1.61 16 32 H 0.14 1.05 8.00 -52.49 -0.42 0.63 16 33 H 0.08 0.50 7.92 -51.93 -0.41 0.09 16 34 H 0.06 0.42 7.41 -51.93 -0.38 0.03 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.42 7.41 -51.93 -0.38 0.04 16 40 H 0.16 1.63 7.12 -52.49 -0.37 1.26 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -31.80 331.71 -7.68 -39.48 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.86 Total: -0.42 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.68 Total: -7.03 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.53 Total: -32.44 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.65 Total: -21.05 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.80 -7.68 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810710655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.787 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds