Wall clock time and date at job start Mon Mar 30 2020 07:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46970 * 2 1 4 4 O 1.42893 * 109.47280 * 240.00492 * 2 1 3 5 5 C 1.50702 * 109.47359 * 119.99881 * 2 1 3 6 6 C 1.38217 * 119.94833 * 94.98124 * 5 2 1 7 7 C 1.38111 * 120.12584 * 180.02562 * 6 5 2 8 8 C 1.38971 * 120.03695 * 0.02562 * 7 6 5 9 9 N 1.39671 * 120.04875 * 180.27349 * 8 7 6 10 10 C 1.46501 * 120.00354 * 179.72422 * 9 8 7 11 11 C 1.50697 * 109.47123 * 89.99613 * 10 9 8 12 12 H 1.08001 * 120.00285 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00052 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00124 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47067 * 89.99693 * 15 13 11 17 17 H 1.48495 * 109.47351 * 210.00347 * 15 13 11 18 18 H 1.48510 * 109.46855 * 330.00242 * 15 13 11 19 19 C 1.46504 * 119.99916 * 359.72265 * 9 8 7 20 20 C 1.52997 * 117.49926 * 188.62174 * 19 9 8 21 21 C 1.53004 * 60.00222 * 252.51274 * 20 19 9 22 22 C 1.38795 * 119.90679 * 0.02562 * 8 7 6 23 23 C 1.38614 * 119.86875 * 359.97438 * 22 8 7 24 24 O 1.35899 * 120.01160 * 179.97438 * 23 22 8 25 25 H 1.09005 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47211 * 299.99358 * 1 2 3 27 27 H 1.08996 * 109.47226 * 59.99950 * 1 2 3 28 28 H 0.96701 * 114.00186 * 59.99380 * 4 2 1 29 29 H 1.08001 * 119.93878 * 359.97438 * 6 5 2 30 30 H 1.08010 * 119.98574 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.47276 * 209.99995 * 10 9 8 32 32 H 1.09006 * 109.46619 * 330.00095 * 10 9 8 33 33 H 0.96998 * 119.99575 * 179.97438 * 14 13 11 34 34 H 1.09000 * 115.55127 * 334.33338 * 19 9 8 35 35 H 1.09003 * 117.49932 * 359.97438 * 20 19 9 36 36 H 1.09000 * 117.49825 * 145.02385 * 20 19 9 37 37 H 1.09002 * 117.50009 * 252.51234 * 21 20 19 38 38 H 1.08994 * 117.50004 * 107.48443 * 21 20 19 39 39 H 1.08005 * 120.06295 * 180.02562 * 22 8 7 40 40 H 0.96701 * 113.99693 * 90.00794 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0324 -0.7104 1.2305 6 6 2.3605 -2.0516 1.1673 7 6 2.8207 -2.7063 2.2929 8 6 2.9546 -2.0175 3.4924 9 7 3.4254 -2.6781 4.6294 10 6 3.5718 -1.9495 5.8920 11 6 2.2891 -2.0428 6.6774 12 1 1.4490 -2.5904 6.2765 13 6 2.1881 -1.4290 7.9079 14 7 1.0688 -1.5109 8.5937 15 14 3.6409 -0.4813 8.6011 16 1 3.5609 0.9359 8.1649 17 1 3.6114 -0.5452 10.0844 18 1 4.9055 -1.0813 8.1049 19 6 3.7729 -4.0996 4.5595 20 6 4.0882 -4.8153 5.8745 21 6 5.2143 -4.4916 4.8906 22 6 2.6245 -0.6710 3.5577 23 6 2.1630 -0.0177 2.4257 24 8 1.8385 1.3006 2.4865 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.7210 -0.2700 -1.9979 29 1 2.2559 -2.5888 0.2362 30 1 3.0761 -3.7546 2.2410 31 1 4.3852 -2.3863 6.4713 32 1 3.7951 -0.9031 5.6837 33 1 0.9979 -1.0794 9.4595 34 1 3.2611 -4.6711 3.7852 35 1 4.0375 -4.2284 6.7917 36 1 3.7837 -5.8579 5.9656 37 1 5.6507 -5.3213 4.3345 38 1 5.9040 -3.6919 5.1605 39 1 2.7279 -0.1331 4.4886 40 1 2.5743 1.8962 2.2892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093672421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:55 Heat of formation + Delta-G solvation = -29.781266 kcal Electronic energy + Delta-G solvation = -21763.987423 eV Core-core repulsion = 18545.077669 eV Total energy + Delta-G solvation = -3218.909754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.77018 -38.12864 -36.94384 -35.94402 -33.72494 -32.48094 -30.99872 -29.47925 -28.76756 -26.83657 -23.35095 -23.24305 -21.90397 -21.42149 -20.96078 -19.35998 -17.87585 -17.14874 -16.92453 -16.36596 -15.58656 -15.37232 -14.81899 -14.41699 -14.19058 -13.91509 -13.75376 -13.34998 -12.98560 -12.67877 -12.56172 -12.36143 -12.05832 -11.74352 -11.70467 -11.24083 -11.08341 -10.96946 -10.76714 -10.57334 -10.45371 -10.14522 -10.06994 -10.03745 -9.86635 -9.48603 -8.78855 -8.67389 -8.19199 -6.48058 -6.15787 -4.15717 1.82141 2.05311 3.19139 3.26190 3.27701 3.74096 4.11852 4.29888 4.32676 4.41900 4.67470 5.06468 5.13310 5.22398 5.27851 5.31346 5.38643 5.43745 5.52895 5.74123 5.82745 5.91821 5.94710 6.01711 6.18849 6.22844 6.30049 6.37777 6.43501 6.60224 6.61905 6.76007 6.84577 6.94421 7.05919 7.21176 7.49751 7.71293 7.93297 8.05079 8.25388 8.47835 8.93159 9.43462 10.97239 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.005707 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.803178 B = 4905.121623 C = 5950.581098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.163 3.837 3 H 0.054 0.946 4 O -0.567 6.567 5 C -0.191 4.191 6 C -0.035 4.035 7 C -0.221 4.221 8 C 0.258 3.742 9 N -0.575 5.575 10 C 0.218 3.782 11 C -0.530 4.530 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.892 5.892 15 Si 0.868 3.132 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.096 3.904 20 C -0.177 4.177 21 C -0.208 4.208 22 C -0.212 4.212 23 C 0.154 3.846 24 O -0.498 6.498 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.373 0.627 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 0.799 -14.943 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.104 3.896 3 H 0.072 0.928 4 O -0.372 6.372 5 C -0.193 4.193 6 C -0.054 4.054 7 C -0.244 4.244 8 C 0.151 3.849 9 N -0.278 5.278 10 C 0.098 3.902 11 C -0.569 4.569 12 H 0.096 0.904 13 C -0.129 4.129 14 N -0.530 5.530 15 Si 0.695 3.305 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.010 4.010 20 C -0.215 4.215 21 C -0.247 4.247 22 C -0.235 4.235 23 C 0.109 3.891 24 O -0.308 6.308 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.219 0.781 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.155 0.845 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.692 0.178 -13.948 14.717 hybrid contribution 0.727 1.106 0.201 1.338 sum 5.419 1.284 -13.746 14.831 Atomic orbital electron populations 1.22454 0.96119 1.02685 1.02141 1.20145 0.92361 0.93718 0.83353 0.92786 1.86525 1.77090 1.57846 1.15756 1.19360 1.11370 0.95537 0.93083 1.20409 0.94827 0.92977 0.97189 1.20637 1.11318 1.00055 0.92342 1.17627 0.90083 0.90716 0.86429 1.46259 1.66335 1.06912 1.08282 1.19693 0.97877 0.91594 0.81077 1.21411 0.98693 1.34386 1.02402 0.90411 1.24873 0.95556 0.95807 0.96615 1.69896 1.25517 1.43980 1.13638 0.86978 0.83532 0.81149 0.78852 1.19903 1.20878 1.19086 1.21316 0.96262 0.83475 0.99961 1.23333 1.01616 1.00980 0.95571 1.23440 0.93015 1.03337 1.04952 1.20941 1.08548 0.94483 0.99554 1.17807 0.96373 0.83485 0.91428 1.84817 1.38981 1.14073 1.92900 0.91994 0.91017 0.92999 0.78112 0.85916 0.86385 0.95147 0.95554 0.92489 0.86578 0.86850 0.88829 0.89034 0.89136 0.84530 0.76251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.52 37.16 0.35 -1.80 16 2 C 0.16 2.12 3.51 -27.88 -0.10 2.03 16 3 H 0.05 0.64 7.69 -51.93 -0.40 0.25 16 4 O -0.57 -6.78 12.15 -35.23 -0.43 -7.21 16 5 C -0.19 -3.10 5.08 -104.44 -0.53 -3.63 16 6 C -0.04 -0.58 9.34 -39.64 -0.37 -0.95 16 7 C -0.22 -3.85 9.28 -39.36 -0.37 -4.22 16 8 C 0.26 5.13 6.55 -83.81 -0.55 4.58 16 9 N -0.57 -11.84 2.93 -165.56 -0.48 -12.33 16 10 C 0.22 5.05 3.28 -5.19 -0.02 5.03 16 11 C -0.53 -14.52 9.74 -34.44 -0.34 -14.86 16 12 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 14 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 15 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 19 C 0.10 1.68 5.97 -67.93 -0.41 1.27 16 20 C -0.18 -3.00 9.72 -26.73 -0.26 -3.26 16 21 C -0.21 -3.15 10.13 -26.73 -0.27 -3.42 16 22 C -0.21 -4.27 9.14 -39.24 -0.36 -4.63 16 23 C 0.15 2.71 6.67 -39.25 -0.26 2.45 16 24 O -0.50 -7.68 12.63 -19.42 -0.25 -7.93 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.37 2.66 9.08 45.56 0.41 3.07 16 29 H 0.12 1.84 7.34 -52.49 -0.39 1.46 16 30 H 0.12 1.84 6.13 -52.48 -0.32 1.51 16 31 H 0.03 0.70 5.39 -51.93 -0.28 0.42 16 32 H 0.03 0.62 5.62 -51.93 -0.29 0.32 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.12 1.82 6.42 -51.93 -0.33 1.49 16 35 H 0.11 2.24 6.29 -51.93 -0.33 1.92 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.44 8.12 -51.93 -0.42 1.02 16 39 H 0.14 2.98 6.14 -52.48 -0.32 2.66 16 40 H 0.38 3.95 9.06 45.56 0.41 4.37 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -32.08 327.66 -7.64 -39.72 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -3.96 Total: 12.34 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -3.57 Total: -19.41 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.29 Total: -38.35 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.67 Total: -15.13 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.08 -7.64 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093672421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.937 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds