Wall clock time and date at job start Mon Mar 30 2020 07:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46800 * 2 1 4 4 C 1.50707 * 109.46714 * 119.99109 * 2 1 3 5 5 H 1.07998 * 119.99641 * 120.00367 * 4 2 1 6 6 C 1.37877 * 120.00014 * 300.00327 * 4 2 1 7 7 N 1.31508 * 119.99988 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99527 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47344 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46934 * 120.00021 * 8 6 4 11 11 H 1.48503 * 109.46840 * 239.99796 * 8 6 4 12 12 N 1.46897 * 109.47298 * 239.99242 * 2 1 3 13 13 C 1.46899 * 111.00181 * 306.04589 * 12 2 1 14 14 C 1.46901 * 110.99874 * 70.00294 * 12 2 1 15 15 C 1.50693 * 109.47201 * 169.99963 * 14 12 2 16 16 C 1.38233 * 120.00207 * 89.99355 * 15 14 12 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 14 18 18 C 1.38235 * 120.00220 * 0.28719 * 17 16 15 19 19 C 1.50700 * 120.00255 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47288 * 89.99435 * 19 18 17 21 21 O 1.20826 * 120.00164 * 0.02562 * 20 19 18 22 22 O 1.34228 * 119.99773 * 179.97438 * 20 19 18 23 23 C 1.38237 * 119.99712 * 359.94731 * 18 17 16 24 24 C 1.38234 * 120.00033 * 0.02562 * 23 18 17 25 25 H 1.08996 * 109.46916 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47405 * 300.00581 * 1 2 3 27 27 H 1.09002 * 109.46761 * 60.00748 * 1 2 3 28 28 H 0.97008 * 119.99562 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47138 * 183.95535 * 13 12 2 30 30 H 1.09001 * 109.47096 * 303.95801 * 13 12 2 31 31 H 1.09000 * 109.46753 * 63.95741 * 13 12 2 32 32 H 1.09000 * 109.47084 * 49.99967 * 14 12 2 33 33 H 1.09001 * 109.46701 * 289.99703 * 14 12 2 34 34 H 1.08002 * 120.00157 * 0.02562 * 16 15 14 35 35 H 1.07999 * 120.00009 * 180.25939 * 17 16 15 36 36 H 1.09005 * 109.47111 * 209.99797 * 19 18 17 37 37 H 1.09002 * 109.46493 * 329.99148 * 19 18 17 38 38 H 0.96704 * 117.00107 * 179.97438 * 22 20 19 39 39 H 1.08001 * 119.99643 * 180.02562 * 23 18 17 40 40 H 1.08003 * 119.99512 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2307 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8305 2.6033 8 14 2.3223 -1.1191 4.0082 9 1 3.1472 -2.2859 3.6042 10 1 3.1470 -0.1852 4.8162 11 1 1.1675 -1.5861 4.8167 12 7 2.0197 -0.6926 -1.1993 13 6 1.4344 -2.0356 -1.3076 14 6 1.7531 0.0970 -2.4090 15 6 2.4776 -0.5166 -3.5792 16 6 1.8542 -1.4798 -4.3502 17 6 2.5167 -2.0386 -5.4271 18 6 3.8048 -1.6384 -5.7296 19 6 4.5273 -2.2479 -6.9033 20 6 4.2529 -1.4326 -8.1406 21 8 3.5439 -0.4564 -8.0759 22 8 4.7971 -1.7903 -9.3143 23 6 4.4300 -0.6786 -4.9557 24 6 3.7673 -0.1195 -3.8791 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 0.7093 1.1622 3.4843 29 1 1.8666 -2.5523 -2.1645 30 1 1.6467 -2.5988 -0.3987 31 1 0.3557 -1.9522 -1.4397 32 1 2.1027 1.1186 -2.2604 33 1 0.6815 0.1050 -2.6087 34 1 0.8477 -1.7924 -4.1141 35 1 2.0281 -2.7881 -6.0320 36 1 5.5991 -2.2578 -6.7049 37 1 4.1765 -3.2686 -7.0555 38 1 4.5920 -1.2367 -10.0802 39 1 5.4362 -0.3656 -5.1922 40 1 4.2557 0.6307 -3.2747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097802401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:29 Heat of formation + Delta-G solvation = -64.140511 kcal Electronic energy + Delta-G solvation = -21023.390528 eV Core-core repulsion = 17802.990845 eV Total energy + Delta-G solvation = -3220.399683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57116 -39.22309 -37.05847 -36.28038 -33.60891 -32.32029 -30.76807 -29.53491 -27.99553 -26.10278 -25.20705 -23.58559 -22.49930 -21.89666 -20.38397 -19.17097 -18.32222 -16.78141 -16.28142 -16.27816 -15.71896 -15.17708 -15.09772 -14.88370 -14.26311 -13.54201 -13.43815 -13.34674 -13.19112 -12.70086 -12.50986 -12.35893 -12.06278 -11.73335 -11.58443 -11.11899 -11.07214 -10.98541 -10.81975 -10.77090 -10.69471 -10.55761 -10.38881 -10.02968 -9.79206 -8.89609 -8.67999 -8.41031 -8.37346 -7.12906 -5.99780 -4.03159 1.41225 1.63526 2.00291 2.89342 3.30842 3.38735 3.43625 3.98831 4.43724 4.46641 4.73679 5.09195 5.11713 5.15833 5.21248 5.25666 5.31466 5.37577 5.69220 5.73209 5.94238 6.06940 6.21769 6.25837 6.27112 6.33973 6.41491 6.58994 6.63891 6.68452 6.83197 6.90184 6.96972 7.13282 7.19832 7.47223 7.66818 7.72265 7.85813 8.14244 8.39342 8.60246 9.03327 9.61832 11.07371 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041437 B = 0.003214 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.565054 B = 8710.609620 C = 8889.137879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.527 5.527 13 C 0.032 3.968 14 C 0.086 3.914 15 C -0.050 4.050 16 C -0.114 4.114 17 C -0.105 4.105 18 C -0.097 4.097 19 C -0.067 4.067 20 C 0.475 3.525 21 O -0.503 6.503 22 O -0.522 6.522 23 C -0.104 4.104 24 C -0.099 4.099 25 H 0.031 0.969 26 H 0.088 0.912 27 H 0.006 0.994 28 H 0.259 0.741 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.409 0.591 39 H 0.117 0.883 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -5.647 -19.620 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.251 5.251 13 C -0.116 4.116 14 C -0.042 4.042 15 C -0.051 4.051 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.098 4.098 19 C -0.104 4.104 20 C 0.317 3.683 21 O -0.389 6.389 22 O -0.335 6.335 23 C -0.122 4.122 24 C -0.117 4.117 25 H 0.050 0.950 26 H 0.107 0.893 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.267 0.733 39 H 0.135 0.865 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.897 -5.547 -19.045 20.694 hybrid contribution -0.820 0.067 0.288 0.871 sum 5.077 -5.481 -18.757 20.190 Atomic orbital electron populations 1.22410 1.00838 0.99431 1.00485 1.19348 0.89785 0.94502 0.85985 0.94358 1.21145 1.30333 1.12428 0.89558 0.91895 1.24931 0.95286 0.95165 0.99003 1.69897 1.37232 1.23107 1.23262 0.86469 0.78517 0.79679 0.82914 1.19734 1.21082 1.21224 1.62383 1.58809 1.02387 1.01510 1.22287 0.95978 0.91983 1.01368 1.21072 0.96593 0.97456 0.89085 1.20052 0.94439 0.95288 0.95324 1.21016 1.00037 0.96890 0.95279 1.20833 0.93864 1.00134 0.97468 1.19080 0.95154 0.99256 0.96269 1.20228 1.03376 0.99335 0.87494 1.23568 0.76417 0.83840 0.84506 1.90770 1.35268 1.27013 1.85870 1.84537 1.70503 1.58680 1.19740 1.20897 0.99594 0.96171 0.95518 1.21015 0.94186 1.00056 0.96478 0.94977 0.89340 0.97478 0.93093 0.93561 0.90958 0.96606 0.90622 0.94730 0.86303 0.86642 0.86887 0.86955 0.73279 0.86512 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.22 37.16 0.31 -3.86 16 2 C 0.21 5.26 2.31 -68.86 -0.16 5.10 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.56 7.91 -34.44 -0.27 -13.83 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.86 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 N -0.53 -11.34 4.69 -237.73 -1.12 -12.46 16 13 C 0.03 0.64 8.27 60.06 0.50 1.14 16 14 C 0.09 1.59 4.69 -4.98 -0.02 1.57 16 15 C -0.05 -0.82 4.88 -104.63 -0.51 -1.33 16 16 C -0.11 -1.67 7.97 -39.58 -0.32 -1.98 16 17 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 18 C -0.10 -1.18 4.37 -104.62 -0.46 -1.63 16 19 C -0.07 -0.57 5.94 -29.04 -0.17 -0.74 16 20 C 0.48 4.69 8.32 36.00 0.30 4.99 16 21 O -0.50 -6.99 16.79 -18.75 -0.31 -7.30 16 22 O -0.52 -3.70 13.42 -39.25 -0.53 -4.22 16 23 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 24 C -0.10 -1.50 9.70 -39.58 -0.38 -1.88 16 25 H 0.03 0.75 6.42 -51.93 -0.33 0.42 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 27 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.05 0.81 6.17 -51.93 -0.32 0.49 16 30 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 31 H 0.02 0.30 6.46 -51.93 -0.34 -0.03 16 32 H 0.08 1.40 7.88 -51.93 -0.41 0.99 16 33 H 0.03 0.64 7.00 -51.93 -0.36 0.28 16 34 H 0.12 1.65 8.03 -52.49 -0.42 1.22 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.11 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.41 1.32 9.10 45.56 0.41 1.73 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -32.06 328.88 -8.27 -40.33 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.82 Total: 1.68 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.06 Total: -14.46 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.49 Total: -37.32 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.84 Total: -11.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.06 -8.27 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097802401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.806 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds