Wall clock time and date at job start Mon Mar 30 2020 07:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46904 * 110.99770 * 58.95488 * 12 2 1 14 14 C 1.46895 * 111.00230 * 295.00304 * 12 2 1 15 15 C 1.50700 * 109.47089 * 190.00004 * 14 12 2 16 16 C 1.38238 * 119.99762 * 269.71846 * 15 14 12 17 17 C 1.38239 * 119.99381 * 179.74462 * 16 15 14 18 18 C 1.38232 * 120.00508 * 0.53299 * 17 16 15 19 19 C 1.50697 * 120.00379 * 179.76463 * 18 17 16 20 20 C 1.50693 * 109.47250 * 269.98056 * 19 18 17 21 21 O 1.20823 * 120.00346 * 0.02562 * 20 19 18 22 22 O 1.34230 * 120.00013 * 179.97438 * 20 19 18 23 23 C 1.38240 * 119.99811 * 359.74481 * 18 17 16 24 24 C 1.38236 * 119.99973 * 359.97438 * 23 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47139 * 59.99870 * 13 12 2 30 30 H 1.08998 * 109.46871 * 180.02562 * 13 12 2 31 31 H 1.09004 * 109.46908 * 299.99719 * 13 12 2 32 32 H 1.09002 * 109.47046 * 309.99881 * 14 12 2 33 33 H 1.09000 * 109.47644 * 69.99406 * 14 12 2 34 34 H 1.07999 * 120.00154 * 0.02562 * 16 15 14 35 35 H 1.08001 * 119.99544 * 180.30354 * 17 16 15 36 36 H 1.09000 * 109.46909 * 29.98249 * 19 18 17 37 37 H 1.09000 * 109.46792 * 149.97823 * 19 18 17 38 38 H 0.96696 * 117.00301 * 180.02562 * 22 20 19 39 39 H 1.07997 * 120.00470 * 179.97438 * 23 18 17 40 40 H 1.07999 * 119.99858 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 6 2.3679 -0.5573 3.6005 16 6 1.7822 -1.5812 4.3212 17 6 2.4444 -2.1317 5.4026 18 6 3.6872 -1.6510 5.7700 19 6 4.4067 -2.2476 6.9522 20 6 4.0267 -1.4972 8.2025 21 8 3.2508 -0.5731 8.1403 22 8 4.5493 -1.8561 9.3856 23 6 4.2704 -0.6231 5.0528 24 6 3.6109 -0.0765 3.9678 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 0.7092 1.1618 -3.4843 29 1 1.8762 -2.6150 0.3647 30 1 1.9053 -2.5656 2.1439 31 1 0.4384 -2.0742 1.2639 32 1 1.9297 1.0869 2.3125 33 1 0.5722 -0.0345 2.5726 34 1 0.8094 -1.9541 4.0367 35 1 1.9889 -2.9350 5.9628 36 1 4.1255 -3.2954 7.0576 37 1 5.4831 -2.1741 6.7972 38 1 4.2754 -1.3454 10.1597 39 1 5.2412 -0.2472 5.3399 40 1 4.0663 0.7268 3.4077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097802402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:32 Heat of formation + Delta-G solvation = -63.552890 kcal Electronic energy + Delta-G solvation = -21028.670319 eV Core-core repulsion = 17808.296117 eV Total energy + Delta-G solvation = -3220.374202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57262 -39.22747 -37.06475 -36.28130 -33.60746 -32.31374 -30.77140 -29.51481 -28.03515 -26.12443 -25.15727 -23.59262 -22.49872 -21.90703 -20.39429 -19.15963 -18.32299 -16.78110 -16.27943 -16.26675 -15.74280 -15.18663 -15.09756 -14.87100 -14.26541 -13.54202 -13.44817 -13.33646 -13.19527 -12.72725 -12.50695 -12.33995 -12.06890 -11.73321 -11.56843 -11.11973 -11.08255 -10.98333 -10.81815 -10.76415 -10.72626 -10.54701 -10.38506 -10.00995 -9.79351 -8.87934 -8.67823 -8.40949 -8.38006 -7.12069 -6.00290 -4.03826 1.41189 1.63307 2.00250 2.89311 3.30504 3.38416 3.43091 3.98719 4.43321 4.46586 4.73630 5.09185 5.11873 5.15814 5.21293 5.25656 5.31183 5.37778 5.69129 5.73317 5.94387 6.06977 6.21943 6.25942 6.27468 6.34362 6.43492 6.58915 6.63740 6.69010 6.83388 6.92018 6.96814 7.13191 7.19708 7.49592 7.66784 7.73082 7.84666 8.12662 8.39345 8.60483 9.02549 9.61218 11.06911 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042335 B = 0.003205 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.238276 B = 8733.461461 C = 8903.547563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.528 5.528 13 C 0.031 3.969 14 C 0.086 3.914 15 C -0.050 4.050 16 C -0.114 4.114 17 C -0.105 4.105 18 C -0.097 4.097 19 C -0.067 4.067 20 C 0.475 3.525 21 O -0.503 6.503 22 O -0.522 6.522 23 C -0.104 4.104 24 C -0.099 4.099 25 H 0.030 0.970 26 H 0.007 0.993 27 H 0.088 0.912 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.017 0.983 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.409 0.591 39 H 0.117 0.883 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -5.702 19.680 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.042 4.042 15 C -0.051 4.051 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.098 4.098 19 C -0.104 4.104 20 C 0.317 3.683 21 O -0.389 6.389 22 O -0.335 6.335 23 C -0.122 4.122 24 C -0.118 4.118 25 H 0.049 0.951 26 H 0.026 0.974 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.267 0.733 39 H 0.135 0.865 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.680 -5.561 19.122 20.709 hybrid contribution -0.872 -0.030 -0.326 0.932 sum 4.807 -5.591 18.796 20.191 Atomic orbital electron populations 1.22409 1.00899 0.99372 1.00549 1.19341 0.89752 0.94588 0.85933 0.94276 1.21159 1.30420 1.12442 0.89616 0.91868 1.24932 0.95264 0.95148 0.99008 1.69896 1.37180 1.23092 1.23273 0.86470 0.78513 0.79679 0.82922 1.19740 1.21218 1.21070 1.62397 1.59414 1.01964 1.01349 1.22299 0.96972 0.91279 1.01160 1.21064 0.96220 0.98034 0.88909 1.20058 0.94637 0.95046 0.95353 1.21021 1.00064 0.96662 0.95490 1.20835 0.94167 0.99996 0.97288 1.19078 0.95801 0.98565 0.96319 1.20224 1.02848 1.00220 0.87140 1.23566 0.77612 0.82384 0.84764 1.90769 1.32878 1.28623 1.86649 1.84535 1.68687 1.61710 1.18531 1.20897 0.99665 0.95825 0.95786 1.21013 0.94417 1.00145 0.96195 0.95063 0.97372 0.89330 0.93082 0.90969 0.93579 0.96480 0.90660 0.94643 0.86284 0.86637 0.86951 0.86891 0.73280 0.86514 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.28 37.16 0.31 -3.88 16 2 C 0.21 5.26 2.34 -68.87 -0.16 5.10 16 3 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 4 C -0.50 -13.58 7.94 -34.44 -0.27 -13.86 16 5 H 0.06 1.74 6.75 -52.49 -0.35 1.38 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.53 -11.36 4.73 -237.73 -1.13 -12.48 16 13 C 0.03 0.62 8.56 60.07 0.51 1.14 16 14 C 0.09 1.59 4.56 -4.98 -0.02 1.56 16 15 C -0.05 -0.82 4.88 -104.62 -0.51 -1.33 16 16 C -0.11 -1.67 7.92 -39.58 -0.31 -1.98 16 17 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 18 C -0.10 -1.18 4.37 -104.62 -0.46 -1.63 16 19 C -0.07 -0.57 5.94 -29.04 -0.17 -0.74 16 20 C 0.48 4.69 8.32 36.00 0.30 4.99 16 21 O -0.50 -6.98 16.79 -18.75 -0.31 -7.30 16 22 O -0.52 -3.69 13.42 -39.26 -0.53 -4.22 16 23 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 24 C -0.10 -1.50 9.70 -39.58 -0.38 -1.88 16 25 H 0.03 0.73 6.38 -51.93 -0.33 0.40 16 26 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.07 1.54 6.53 -51.93 -0.34 1.20 16 30 H 0.05 0.81 5.90 -51.93 -0.31 0.50 16 31 H 0.02 0.33 6.28 -51.93 -0.33 0.01 16 32 H 0.07 1.39 7.94 -51.93 -0.41 0.98 16 33 H 0.04 0.66 6.88 -51.93 -0.36 0.30 16 34 H 0.12 1.65 8.00 -52.49 -0.42 1.23 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.11 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.41 1.32 9.10 45.56 0.41 1.73 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -32.04 327.93 -8.21 -40.25 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.76 Total: 1.82 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.04 Total: -14.49 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.50 Total: -37.32 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.84 Total: -11.52 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.04 -8.21 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097802402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.300 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds