Wall clock time and date at job start Mon Mar 30 2020 08:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48494 * 109.47575 * 240.00547 * 3 2 1 5 5 H 1.48502 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47136 * 120.00117 * 3 2 1 7 7 C 1.37879 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99704 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99854 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.66922 * 61.78670 * 9 7 2 11 11 C 1.54887 * 110.75692 * 298.54873 * 9 7 2 12 12 C 1.54269 * 104.19181 * 203.74587 * 11 9 7 13 13 C 1.53874 * 106.60126 * 23.60965 * 12 11 9 14 14 H 1.09006 * 110.02829 * 240.66696 * 13 12 11 15 15 N 1.46498 * 110.02943 * 119.28601 * 13 12 11 16 16 C 1.34780 * 119.99804 * 87.09655 * 15 13 12 17 17 O 1.21606 * 120.00398 * 359.97438 * 16 15 13 18 18 C 1.47107 * 119.99729 * 179.97438 * 16 15 13 19 19 C 1.32987 * 120.00006 * 187.05990 * 18 16 15 20 20 C 1.51263 * 120.85328 * 192.05029 * 19 18 16 21 21 C 1.53228 * 108.54155 * 231.32609 * 20 19 18 22 22 C 1.52957 * 109.40074 * 305.37176 * 21 20 19 23 23 C 1.52956 * 109.76054 * 63.63571 * 22 21 20 24 24 C 1.51273 * 120.85038 * 12.02621 * 19 18 16 25 25 C 1.54263 * 106.63909 * 359.97438 * 13 12 11 26 26 H 0.96997 * 120.00349 * 359.97438 * 1 2 3 27 27 H 1.08992 * 110.48791 * 85.06979 * 11 9 7 28 28 H 1.09000 * 110.48595 * 322.41555 * 11 9 7 29 29 H 1.09005 * 110.02922 * 264.32140 * 12 11 9 30 30 H 1.09002 * 110.02966 * 142.89704 * 12 11 9 31 31 H 0.97000 * 120.00271 * 267.08603 * 15 13 12 32 32 H 1.07998 * 119.99545 * 7.05910 * 18 16 15 33 33 H 1.09006 * 109.63092 * 111.60590 * 20 19 18 34 34 H 1.09003 * 109.78126 * 351.13630 * 20 19 18 35 35 H 1.08995 * 109.48602 * 185.38942 * 21 20 19 36 36 H 1.09000 * 109.49235 * 65.35658 * 21 20 19 37 37 H 1.09000 * 109.40969 * 183.69767 * 22 21 20 38 38 H 1.08998 * 109.41586 * 303.55809 * 22 21 20 39 39 H 1.09000 * 109.48740 * 56.34254 * 23 22 21 40 40 H 1.09006 * 109.48271 * 176.38824 * 23 22 21 41 41 H 1.08996 * 109.62802 * 248.39086 * 24 19 18 42 42 H 1.08997 * 109.62558 * 8.77197 * 24 19 18 43 43 H 1.09000 * 110.48334 * 95.09582 * 25 13 12 44 44 H 1.08998 * 110.48327 * 217.73407 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6408 -2.5911 -0.8990 11 6 0.3777 -2.6287 1.2720 12 6 0.1833 -4.1494 1.4441 13 6 1.3584 -4.8278 0.7183 14 1 0.9844 -5.4664 -0.0819 15 7 2.1437 -5.6208 1.6673 16 6 1.7974 -6.8970 1.9277 17 8 0.8327 -7.3901 1.3754 18 6 2.5863 -7.6935 2.8802 19 6 2.3330 -8.9901 3.0328 20 6 2.9331 -9.7676 4.1831 21 6 3.6115 -11.0218 3.6221 22 6 2.6051 -11.8122 2.7843 23 6 2.1710 -10.9800 1.5765 24 6 1.4368 -9.7250 2.0607 25 6 2.2263 -3.6964 0.1296 26 1 -0.4850 0.8400 0.0004 27 1 -0.5833 -2.1353 1.1270 28 1 0.8962 -2.2105 2.1348 29 1 -0.7610 -4.4582 0.9955 30 1 0.1973 -4.4102 2.5023 31 1 2.9131 -5.2275 2.1081 32 1 3.3712 -7.2252 3.4555 33 1 2.1461 -10.0575 4.8794 34 1 3.6702 -9.1526 4.6994 35 1 3.9662 -11.6423 4.4451 36 1 4.4554 -10.7301 2.9970 37 1 3.0678 -12.7369 2.4395 38 1 1.7328 -12.0487 3.3936 39 1 3.0496 -10.6890 1.0008 40 1 1.5039 -11.5708 0.9487 41 1 0.5112 -10.0109 2.5603 42 1 1.2104 -9.0798 1.2119 43 1 3.0437 -3.4506 0.8075 44 1 2.6134 -3.9823 -0.8484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295541321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:40:27 Heat of formation + Delta-G solvation = -52.267977 kcal Electronic energy + Delta-G solvation = -21391.445685 eV Core-core repulsion = 18307.393928 eV Total energy + Delta-G solvation = -3084.051757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.91535 -38.27567 -36.89468 -33.63359 -32.78260 -31.88926 -31.13032 -28.18976 -27.73526 -26.20011 -23.85794 -23.09100 -21.88157 -20.49760 -19.72524 -19.06304 -18.42225 -16.74911 -16.49316 -15.63783 -15.34903 -14.72123 -14.52885 -14.41745 -14.38140 -13.99844 -13.61254 -13.29821 -12.76778 -12.68551 -12.44318 -12.30894 -12.00624 -11.74484 -11.29758 -11.12505 -11.07979 -11.01779 -10.92886 -10.70106 -10.58856 -10.47112 -10.22137 -9.91761 -9.50379 -9.26049 -9.21861 -8.92602 -8.80079 -8.46051 -8.34980 -5.99895 -4.03602 1.40088 3.31689 3.36923 3.38715 3.49620 3.59946 4.43968 4.51891 4.55437 4.69790 4.85696 4.98799 5.15387 5.22358 5.29931 5.32100 5.40278 5.44740 5.59257 5.65283 5.70120 5.74722 5.81525 5.85895 5.87652 5.90477 6.12826 6.20385 6.34322 6.39202 6.48686 6.61580 6.66907 6.72332 6.79581 6.93152 7.00877 7.29411 7.36312 7.73191 7.88969 7.92755 8.03965 8.43571 8.58780 8.98284 9.60449 11.09170 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.046489 B = 0.002964 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.145296 B = 9445.487117 C = 9648.208032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.134 4.134 13 C 0.138 3.862 14 H 0.079 0.921 15 N -0.713 5.713 16 C 0.542 3.458 17 O -0.545 6.545 18 C -0.228 4.228 19 C -0.028 4.028 20 C -0.093 4.093 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.260 0.740 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.397 0.603 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.124 0.876 43 H 0.060 0.940 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 -19.911 7.574 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.173 4.173 13 C 0.034 3.966 14 H 0.097 0.903 15 N -0.362 5.362 16 C 0.332 3.668 17 O -0.427 6.427 18 C -0.249 4.249 19 C -0.030 4.030 20 C -0.130 4.130 21 C -0.154 4.154 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.232 0.768 32 H 0.142 0.858 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.079 0.921 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.392 -20.103 7.165 22.012 hybrid contribution 0.904 1.212 0.432 1.573 sum 6.296 -18.890 7.596 21.312 Atomic orbital electron populations 1.69948 1.05870 1.26555 1.50299 1.24976 0.94834 0.98993 0.95091 0.86700 0.79615 0.83355 0.78541 1.20322 1.21357 1.20357 1.21062 0.92707 0.90476 1.51121 0.92726 1.19557 0.91998 0.91006 0.94141 0.95004 1.22306 1.01632 0.90386 0.99518 1.22650 0.97043 0.98801 0.98797 1.21857 0.92181 0.92010 0.90551 0.90265 1.46288 1.32234 1.12454 1.45244 1.18557 0.84652 0.82045 0.81575 1.90579 1.29166 1.70098 1.52832 1.22401 1.03540 0.95089 1.03834 1.22644 0.93277 0.93457 0.93581 1.20949 1.00111 0.96524 0.95394 1.21568 0.98366 0.95945 0.99545 1.21567 0.99079 0.98208 0.97217 1.21602 1.00319 0.96197 0.97312 1.21612 0.96671 0.96868 1.00682 1.22766 0.98725 0.95486 0.98935 0.93002 0.91256 0.93544 0.92646 0.93256 0.76847 0.85828 0.89954 0.90888 0.91711 0.91744 0.92104 0.91914 0.92100 0.91670 0.90873 0.85839 0.92112 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 12.02 55.43 0.67 -24.71 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.88 8.54 -34.44 -0.29 -14.17 16 8 H 0.05 1.44 7.78 -52.49 -0.41 1.03 16 9 C 0.05 1.26 2.82 -89.74 -0.25 1.01 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.33 5.57 -25.07 -0.14 -2.47 16 12 C -0.13 -2.67 6.59 -25.61 -0.17 -2.84 16 13 C 0.14 2.54 3.23 -66.81 -0.22 2.33 16 14 H 0.08 1.54 7.59 -51.93 -0.39 1.15 16 15 N -0.71 -11.09 4.98 -53.90 -0.27 -11.36 16 16 C 0.54 8.50 7.61 -12.66 -0.10 8.40 16 17 O -0.55 -10.11 12.88 5.27 0.07 -10.04 16 18 C -0.23 -2.78 9.66 -37.81 -0.37 -3.14 16 19 C -0.03 -0.31 5.39 -100.61 -0.54 -0.85 16 20 C -0.09 -0.77 6.03 -27.49 -0.17 -0.93 16 21 C -0.12 -0.86 5.94 -26.64 -0.16 -1.02 16 22 C -0.12 -0.95 5.81 -26.78 -0.16 -1.11 16 23 C -0.12 -1.11 5.93 -26.63 -0.16 -1.27 16 24 C -0.12 -1.45 5.30 -27.48 -0.15 -1.60 16 25 C -0.12 -2.41 5.95 -25.03 -0.15 -2.56 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.07 1.77 7.37 -51.93 -0.38 1.38 16 28 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 31 H 0.40 5.25 8.33 -40.82 -0.34 4.91 16 32 H 0.12 1.20 7.96 -52.49 -0.42 0.79 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.53 7.93 -51.93 -0.41 0.12 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.12 1.84 4.77 -52.96 -0.25 1.59 16 43 H 0.06 1.16 7.63 -51.93 -0.40 0.77 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -29.46 343.65 -10.10 -39.56 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.62 Total: 3.90 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -3.10 Total: -18.59 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.40 Total: -36.07 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.46 -10.10 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295541321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.711 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds