Wall clock time and date at job start Mon Mar 30 2020 07:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38750 * 120.07255 * 2 1 4 4 N 1.39943 * 120.03122 * 359.97438 * 3 2 1 5 5 C 1.34778 * 120.00051 * 145.53216 * 4 3 2 6 6 O 1.21591 * 120.00080 * 4.50638 * 5 4 3 7 7 N 1.34775 * 120.00066 * 184.50689 * 5 4 3 8 8 C 1.46496 * 119.99957 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47218 * 179.97438 * 8 7 5 10 10 H 1.07995 * 119.99702 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00219 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00340 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99774 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47034 * 89.99905 * 13 11 9 15 15 H 1.48503 * 109.46968 * 209.99474 * 13 11 9 16 16 H 1.48499 * 109.47532 * 329.99357 * 13 11 9 17 17 C 1.38898 * 119.93521 * 180.25409 * 3 2 1 18 18 C 1.38188 * 120.07844 * 359.45387 * 17 3 2 19 19 C 1.38122 * 120.14231 * 0.54505 * 18 17 3 20 20 C 1.38760 * 120.06977 * 179.97438 * 2 1 3 21 21 N 1.39671 * 120.04064 * 359.97438 * 20 2 1 22 22 C 1.46908 * 111.00173 * 120.00152 * 21 20 2 23 23 C 1.46901 * 110.99728 * 243.94926 * 21 20 2 24 24 H 1.09002 * 109.47750 * 89.99687 * 1 2 3 25 25 H 1.09003 * 109.47524 * 209.99822 * 1 2 3 26 26 H 1.09002 * 109.47375 * 329.99730 * 1 2 3 27 27 H 0.96998 * 119.99730 * 325.25788 * 4 3 2 28 28 H 0.97001 * 119.99912 * 0.02562 * 7 5 4 29 29 H 1.08999 * 109.47335 * 300.00167 * 8 7 5 30 30 H 1.09006 * 109.47198 * 60.00343 * 8 7 5 31 31 H 0.96994 * 120.00218 * 180.02562 * 12 11 9 32 32 H 1.08007 * 119.95989 * 179.72325 * 17 3 2 33 33 H 1.08007 * 119.92742 * 180.27975 * 18 17 3 34 34 H 1.07998 * 119.97036 * 179.74381 * 19 18 17 35 35 H 1.09003 * 109.47191 * 59.99482 * 22 21 20 36 36 H 1.08992 * 109.46931 * 180.02562 * 22 21 20 37 37 H 1.09007 * 109.46537 * 299.99923 * 22 21 20 38 38 H 1.08997 * 109.47031 * 60.00703 * 23 21 20 39 39 H 1.09003 * 109.46742 * 179.97438 * 23 21 20 40 40 H 1.08998 * 109.47653 * 300.00060 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2022 1.2007 0.0000 4 7 1.5047 2.4139 -0.0005 5 6 2.0028 3.4779 0.6600 6 8 3.0963 3.4089 1.1872 7 7 1.2889 4.6185 0.7361 8 6 1.8300 5.7748 1.4545 9 6 0.8438 6.9126 1.3907 10 1 -0.0927 6.7866 0.8677 11 6 1.1365 8.1138 2.0009 12 7 0.2760 9.1068 1.9448 13 14 2.7560 8.3312 2.9062 14 1 3.7844 8.8428 1.9649 15 1 2.5758 9.3002 4.0170 16 1 3.1951 7.0237 3.4564 17 6 3.5912 1.1974 -0.0053 18 6 4.2809 0.0000 0.0008 19 6 3.5921 -1.1972 0.0008 20 6 2.2022 -1.2009 0.0005 21 7 1.5062 -2.4118 0.0016 22 6 1.8379 -3.2108 -1.1857 23 6 1.7665 -3.1675 1.2342 24 1 -0.3635 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 0.6647 2.4902 -0.4796 28 1 0.4164 4.6735 0.3158 29 1 2.0075 5.5053 2.4957 30 1 2.7689 6.0821 0.9937 31 1 0.4821 9.9519 2.3738 32 1 4.1328 2.1319 -0.0099 33 1 5.3610 0.0003 0.0012 34 1 4.1340 -2.1314 0.0014 35 1 2.9072 -3.4222 -1.1942 36 1 1.2820 -4.1479 -1.1598 37 1 1.5703 -2.6546 -2.0842 38 1 1.4470 -2.5800 2.0949 39 1 1.2121 -4.1056 1.2091 40 1 2.8332 -3.3774 1.3133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488564361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:53 Heat of formation + Delta-G solvation = -12.221798 kcal Electronic energy + Delta-G solvation = -21127.208751 eV Core-core repulsion = 17941.353184 eV Total energy + Delta-G solvation = -3185.855567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83095 -40.47243 -37.83815 -36.17879 -35.52973 -34.39816 -33.20107 -30.60645 -29.28376 -28.44662 -27.72906 -25.57297 -24.40671 -22.69644 -22.24826 -21.40513 -19.94890 -18.69503 -18.30584 -17.15496 -16.92660 -16.61833 -16.34134 -16.00033 -15.95421 -15.66832 -15.03875 -14.78196 -14.50640 -14.30492 -14.25869 -14.14276 -13.40318 -13.27881 -13.06114 -12.98414 -12.86615 -12.69365 -12.56693 -12.40328 -12.31147 -11.93085 -11.66479 -11.42802 -11.08024 -10.92011 -10.04510 -9.53105 -9.42708 -9.01462 -8.39897 -6.47032 0.28894 0.37051 1.33863 1.35816 1.48885 1.65208 2.05062 2.28699 2.77214 2.93766 2.95958 3.34702 3.94174 4.05264 4.17590 4.25011 4.44478 4.45428 4.50893 4.66753 4.71045 4.71713 4.75031 4.86007 4.89729 5.01252 5.03179 5.03871 5.21537 5.30365 5.36603 5.40107 5.43050 5.53140 5.56826 5.89560 5.96047 5.98322 6.21546 6.43138 6.54950 7.05206 7.18865 7.51427 8.74802 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037408 B = 0.003434 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.323376 B = 8150.759780 C = 8551.462670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.097 4.097 3 C 0.157 3.843 4 N -0.672 5.672 5 C 0.695 3.305 6 O -0.621 6.621 7 N -0.714 5.714 8 C 0.251 3.749 9 C -0.546 4.546 10 H 0.061 0.939 11 C 0.028 3.972 12 N -0.931 5.931 13 Si 0.937 3.063 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.260 1.260 17 C -0.144 4.144 18 C -0.101 4.101 19 C -0.162 4.162 20 C 0.097 3.903 21 N -0.513 5.513 22 C 0.028 3.972 23 C 0.027 3.973 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.420 0.580 28 H 0.407 0.593 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.273 0.727 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -26.112 -6.209 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C 0.061 3.939 4 N -0.320 5.320 5 C 0.396 3.604 6 O -0.502 6.502 7 N -0.367 5.367 8 C 0.127 3.873 9 C -0.584 4.584 10 H 0.079 0.921 11 C -0.173 4.173 12 N -0.570 5.570 13 Si 0.761 3.239 14 H -0.189 1.189 15 H -0.198 1.198 16 H -0.184 1.184 17 C -0.164 4.164 18 C -0.120 4.120 19 C -0.183 4.183 20 C 0.003 3.997 21 N -0.234 5.234 22 C -0.118 4.118 23 C -0.120 4.120 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.259 0.741 28 H 0.243 0.757 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.054 0.946 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.925 -25.796 -5.666 26.572 hybrid contribution 0.715 0.768 0.110 1.055 sum 3.640 -25.028 -5.556 25.894 Atomic orbital electron populations 1.20568 0.88999 1.02980 1.03004 1.19683 0.97515 0.89702 1.03139 1.17442 0.91102 0.84227 1.01085 1.42386 1.26946 1.08470 1.54232 1.16147 0.84031 0.80762 0.79478 1.90844 1.22014 1.83512 1.53781 1.45123 1.22108 1.11479 1.57965 1.19009 0.94081 0.82775 0.91417 1.21256 1.04474 0.96659 1.36023 0.92130 1.25563 1.00279 0.95155 0.96266 1.69972 1.37521 1.04412 1.45049 0.85866 0.79944 0.78952 0.79185 1.18934 1.19847 1.18438 1.21366 0.93331 0.99476 1.02256 1.21051 1.00658 0.91197 0.99100 1.21697 0.94498 0.98628 1.03438 1.18448 0.90189 0.90717 1.00379 1.59561 1.56596 1.02860 1.04423 1.22502 0.99822 0.97984 0.91531 1.22495 1.00167 0.98576 0.90716 0.90039 0.89913 0.92460 0.74136 0.75706 0.96929 0.96890 0.91800 0.86603 0.84285 0.84399 0.94630 0.89188 0.91555 0.92185 0.88985 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 9.23 71.23 0.66 -1.29 16 2 C -0.10 -2.37 5.91 -19.62 -0.12 -2.48 16 3 C 0.16 4.65 6.28 38.13 0.24 4.89 16 4 N -0.67 -20.08 4.75 -317.24 -1.51 -21.58 16 5 C 0.70 27.31 8.41 179.05 1.51 28.81 16 6 O -0.62 -29.00 13.75 -4.00 -0.06 -29.06 16 7 N -0.71 -28.88 5.55 -482.29 -2.68 -31.56 16 8 C 0.25 12.36 4.50 85.64 0.38 12.74 16 9 C -0.55 -30.04 9.83 25.60 0.25 -29.79 16 10 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 11 C 0.03 1.57 5.47 84.65 0.46 2.03 16 12 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 13 Si 0.94 44.04 27.47 68.60 1.88 45.92 16 14 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.26 -12.16 6.54 99.48 0.65 -11.51 16 17 C -0.14 -4.50 8.69 22.42 0.19 -4.31 16 18 C -0.10 -2.50 10.03 22.23 0.22 -2.28 16 19 C -0.16 -3.44 8.57 22.42 0.19 -3.24 16 20 C 0.10 2.12 4.71 38.20 0.18 2.30 16 21 N -0.51 -8.78 3.93 -745.14 -2.93 -11.71 16 22 C 0.03 0.36 9.34 127.69 1.19 1.55 16 23 C 0.03 0.38 9.38 127.69 1.20 1.58 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.58 7.46 -2.39 -0.02 1.56 16 26 H 0.06 1.15 7.17 -2.39 -0.02 1.13 16 27 H 0.42 9.65 7.87 -92.71 -0.73 8.92 16 28 H 0.41 14.21 8.34 -92.71 -0.77 13.43 16 29 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 30 H 0.01 0.67 7.57 -2.38 -0.02 0.65 16 31 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.12 4.27 6.19 -2.91 -0.02 4.25 16 33 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.14 2.26 7.01 -2.91 -0.02 2.24 16 35 H 0.04 0.42 7.12 -2.39 -0.02 0.40 16 36 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 37 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.03 0.46 7.34 -2.39 -0.02 0.45 16 Total: -1.00 -68.97 328.66 1.09 -67.88 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.49 Total: 24.75 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.57 Total: 10.52 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -6.82 Total: -120.02 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.06 Total: -29.06 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -68.97 1.09 -67.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488564361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.663 kcal (2) G-P(sol) polarization free energy of solvation -68.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds