Wall clock time and date at job start Mon Mar 30 2020 07:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47497 * 2 1 4 4 H 1.08998 * 109.46908 * 306.28127 * 3 2 1 5 5 C 1.50694 * 109.47244 * 186.27739 * 3 2 1 6 6 H 1.08003 * 119.99802 * 245.74485 * 5 3 2 7 7 C 1.37873 * 120.00307 * 65.75253 * 5 3 2 8 8 N 1.31515 * 120.00484 * 190.91212 * 7 5 3 9 9 Si 1.86803 * 119.99971 * 10.90424 * 7 5 3 10 10 H 1.48494 * 109.47064 * 88.58316 * 9 7 5 11 11 H 1.48501 * 109.47221 * 208.58549 * 9 7 5 12 12 H 1.48506 * 109.47132 * 328.58214 * 9 7 5 13 13 N 1.46900 * 109.46960 * 66.27668 * 3 2 1 14 14 C 1.46906 * 111.00077 * 207.87425 * 13 3 2 15 15 H 1.09002 * 109.46981 * 322.49301 * 14 13 3 16 16 C 1.53002 * 109.47165 * 82.49217 * 14 13 3 17 17 C 1.52998 * 109.47045 * 202.49078 * 14 13 3 18 18 O 1.42897 * 109.47458 * 295.00262 * 17 14 13 19 19 C 1.35897 * 117.00375 * 180.02562 * 18 17 14 20 20 C 1.38723 * 120.05956 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94839 * 179.97438 * 20 19 18 22 22 C 1.38268 * 120.05092 * 0.27851 * 21 20 19 23 23 C 1.50700 * 119.94337 * 179.72146 * 22 21 20 24 24 C 1.38269 * 120.11225 * 359.44349 * 22 21 20 25 25 C 1.38144 * 120.05196 * 0.55095 * 24 22 21 26 26 H 1.09009 * 109.46588 * 304.39927 * 1 2 3 27 27 H 1.08993 * 109.47246 * 64.39753 * 1 2 3 28 28 H 1.08996 * 109.47074 * 184.40244 * 1 2 3 29 29 H 1.09001 * 109.46756 * 240.00152 * 2 1 3 30 30 H 1.08999 * 109.47132 * 120.00287 * 2 1 3 31 31 H 0.96995 * 120.00529 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00270 * 331.82324 * 13 3 2 33 33 H 1.09000 * 109.47129 * 64.56578 * 16 14 13 34 34 H 1.09001 * 109.46935 * 184.56273 * 16 14 13 35 35 H 1.08999 * 109.47274 * 304.56807 * 16 14 13 36 36 H 1.08998 * 109.46987 * 174.99602 * 17 14 13 37 37 H 1.08997 * 109.46862 * 54.99893 * 17 14 13 38 38 H 1.08001 * 120.02886 * 359.94681 * 20 19 18 39 39 H 1.07994 * 119.97662 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.47175 * 89.99326 * 23 22 21 41 41 H 1.09001 * 109.47401 * 209.99545 * 23 22 21 42 42 H 1.09001 * 109.47182 * 330.00084 * 23 22 21 43 43 H 1.08001 * 119.97124 * 180.25976 * 24 22 21 44 44 H 1.08001 * 120.02142 * 179.74392 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5879 1.9877 -0.8284 5 6 3.5390 1.4452 -0.1553 6 1 4.1648 1.7991 0.6507 7 6 4.1116 0.9961 -1.3264 8 7 5.4098 0.7950 -1.3888 9 14 3.0435 0.6732 -2.8245 10 1 2.9172 1.9204 -3.6205 11 1 3.6673 -0.3853 -3.6584 12 1 1.6965 0.2278 -2.3854 13 7 1.6780 2.0898 1.2680 14 6 1.5292 3.5410 1.0945 15 1 2.2822 3.9023 0.3941 16 6 0.1340 3.8487 0.5469 17 6 1.7122 4.2374 2.4444 18 8 0.6561 3.8518 3.3265 19 6 0.6698 4.3858 4.5760 20 6 -0.3255 4.0552 5.4840 21 6 -0.3091 4.5990 6.7538 22 6 0.6953 5.4767 7.1181 23 6 0.7074 6.0733 8.5019 24 6 1.6918 5.8034 6.2169 25 6 1.6797 5.2621 4.9460 26 1 -0.3633 0.5806 0.8480 27 1 -0.3633 0.4440 -0.9267 28 1 -0.3633 -1.0246 0.0789 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.8126 0.4787 -2.2126 32 1 0.8390 1.6840 1.6546 33 1 -0.6168 3.5610 1.2828 34 1 0.0515 4.9161 0.3418 35 1 -0.0266 3.2883 -0.3741 36 1 1.6903 5.3178 2.3018 37 1 2.6701 3.9472 2.8760 38 1 -1.1130 3.3736 5.1982 39 1 -1.0839 4.3423 7.4608 40 1 1.2778 5.4286 9.1707 41 1 1.1686 7.0604 8.4680 42 1 -0.3153 6.1625 8.8682 43 1 2.4775 6.4859 6.5054 44 1 2.4560 5.5209 4.2411 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040499721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:17 Heat of formation + Delta-G solvation = -22.758382 kcal Electronic energy + Delta-G solvation = -21593.228705 eV Core-core repulsion = 18510.456581 eV Total energy + Delta-G solvation = -3082.772125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05132 -38.01138 -36.70810 -33.58082 -32.00287 -31.71527 -31.01402 -29.02592 -26.97113 -26.60003 -25.88406 -22.91168 -22.48419 -21.38513 -20.04790 -19.72448 -18.01269 -16.74372 -15.99870 -15.64141 -15.31374 -14.90931 -14.67557 -14.24310 -14.06786 -13.75708 -13.48088 -13.44045 -13.17304 -12.74432 -12.64479 -12.48706 -12.14459 -11.94656 -11.89664 -11.57929 -11.52967 -11.17333 -10.99450 -10.81092 -10.62905 -10.46973 -10.29019 -10.19841 -9.96313 -9.37654 -9.14802 -8.99528 -8.48862 -7.94150 -7.34032 -6.04524 -3.99119 1.35332 1.46178 3.27077 3.36558 3.38570 3.46729 3.77352 4.43166 4.77303 4.83098 4.90855 4.97340 5.14116 5.23706 5.30391 5.34324 5.46885 5.47629 5.50854 5.66510 5.70740 5.80631 5.82487 5.85066 5.90293 5.95378 6.02980 6.06386 6.20283 6.31303 6.35296 6.41310 6.54061 6.55261 6.58866 6.70630 6.77972 6.85217 6.97780 7.25670 7.62399 7.78806 7.99643 8.30885 8.78736 9.10277 9.60995 11.08901 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.003666 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.665370 B = 7635.525218 C = 8026.111054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C 0.192 3.808 4 H -0.002 1.002 5 C -0.499 4.499 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.667 5.667 14 C 0.092 3.908 15 H 0.103 0.897 16 C -0.180 4.180 17 C 0.072 3.928 18 O -0.306 6.306 19 C 0.138 3.862 20 C -0.155 4.155 21 C -0.083 4.083 22 C -0.138 4.138 23 C -0.106 4.106 24 C -0.080 4.080 25 C -0.207 4.207 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.326 0.674 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.121 0.879 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 9.178 13.084 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.084 3.916 4 H 0.016 0.984 5 C -0.537 4.537 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.684 3.316 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.298 5.298 14 C -0.019 4.019 15 H 0.121 0.879 16 C -0.239 4.239 17 C -0.003 4.003 18 O -0.219 6.219 19 C 0.092 3.908 20 C -0.174 4.174 21 C -0.101 4.101 22 C -0.138 4.138 23 C -0.163 4.163 24 C -0.098 4.098 25 C -0.226 4.226 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.139 0.861 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.198 9.007 13.077 19.430 hybrid contribution -0.995 -0.050 -1.523 1.820 sum -12.193 8.957 11.554 19.037 Atomic orbital electron populations 1.21919 0.98592 1.00304 1.00474 1.22213 0.92529 1.00255 1.02244 1.19529 0.96584 0.89568 0.85928 0.98414 1.21033 0.89283 1.42008 1.01415 0.90315 1.24933 0.94691 0.95027 0.98518 1.69935 1.10426 1.46150 1.27155 0.87376 0.82357 0.78146 0.83672 1.20835 1.21539 1.17312 1.60598 1.39043 1.00813 1.29369 1.21577 0.96466 0.90927 0.92901 0.87910 1.22480 0.98876 1.01235 1.01350 1.23061 0.89661 0.97693 0.89911 1.86077 1.49472 1.66207 1.20161 1.19089 0.94082 0.92237 0.85375 1.20415 0.99776 1.04151 0.93031 1.20783 0.97982 0.96082 0.95226 1.19758 0.96731 1.00595 0.96762 1.20680 1.02150 1.00257 0.93206 1.20805 0.97580 0.98777 0.92662 1.21322 1.00648 1.02095 0.98507 0.93376 0.93868 0.93807 0.91717 0.91933 0.92816 0.85502 0.92184 0.93024 0.92608 0.92676 0.90958 0.85424 0.85827 0.91662 0.91961 0.91952 0.86146 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.82 37.16 0.36 -2.34 16 2 C -0.13 -2.86 4.72 -26.73 -0.13 -2.98 16 3 C 0.19 4.38 1.36 -68.87 -0.09 4.29 16 4 H 0.00 -0.04 5.71 -51.93 -0.30 -0.33 16 5 C -0.50 -13.78 9.09 -34.44 -0.31 -14.09 16 6 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 7 C 0.07 1.98 5.38 -17.82 -0.10 1.88 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.86 20.82 25.80 -169.99 -4.39 16.43 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.25 -5.62 5.23 56.52 0.30 -5.32 16 13 N -0.67 -13.39 5.99 -100.95 -0.60 -13.99 16 14 C 0.09 1.61 2.81 -67.71 -0.19 1.42 16 15 H 0.10 1.96 7.77 -51.93 -0.40 1.56 16 16 C -0.18 -2.76 9.04 37.16 0.34 -2.42 16 17 C 0.07 1.11 4.58 37.16 0.17 1.28 16 18 O -0.31 -4.76 9.12 -19.42 -0.18 -4.94 16 19 C 0.14 1.98 6.69 -39.22 -0.26 1.72 16 20 C -0.16 -1.97 9.99 -39.44 -0.39 -2.37 16 21 C -0.08 -0.91 9.69 -39.60 -0.38 -1.29 16 22 C -0.14 -1.49 5.88 -104.60 -0.62 -2.11 16 23 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 24 C -0.08 -0.92 9.69 -39.60 -0.38 -1.30 16 25 C -0.21 -2.71 9.04 -39.43 -0.36 -3.06 16 26 H 0.05 0.77 6.40 -51.92 -0.33 0.44 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.46 4.61 -51.93 -0.24 1.22 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.33 6.12 6.28 -39.29 -0.25 5.87 16 33 H 0.06 0.89 7.41 -51.93 -0.38 0.51 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.90 7.23 -51.93 -0.38 0.52 16 36 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 37 H 0.07 1.18 7.66 -51.93 -0.40 0.78 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 42 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.58 6.30 -52.49 -0.33 1.25 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -30.13 346.56 -8.45 -38.57 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.29 Total: 7.09 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -1.98 Total: -21.86 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.17 Total: -40.52 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.18 Total: -4.94 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.39 Total: 16.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.13 -8.45 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040499721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.813 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds